BAC Information

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BAC

Clone NameB6Ng01-114K18
Chromosome18 (Build37)10 (Build37)
Map Location 12,338,695 - 12,339,856104,054,629 - 104,055,061
singlet/doubletsingletsinglet
Overlap gene3110002H16Rik
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3
Downstream geneNpc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K18.bB6Ng01-114K18.g
ACCDH920135DH920136
length1,149485
definitionDH920135|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K18, 5' end.DH920136|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,338,695 - 12,339,856)(104,054,629 - 104,055,061)
sequence
gaattctgtgcttggctgtgtggtgttcttccagaggactgtagtcaaac
tgtatgtagagaactcagactgtccctttaaggctgggtcagaacttgta
atgtagtcaagatggcttgaacttctgagcctcctgagtggtgaaattct
gaacataggccaccattctcagtttatggcctgcaggggtctcagcccag
ggctttgtgcagctgggccagccttaccctgccagcccagctactacctg
tccagcagtaaaatggccagaggtgacttgtctctctctctctgactaga
tacgggcagctttacatcctcttcctgcgccatcactctcggacgtctaa
cagcacgggagcggaggtggtgctgtaccatctcccacggtacgtctgtc
tcatgctctcggcactctctgctcttaagttaaagtaaggcttgctgacc
tctttctctgacctctgtgttgtcttacagagagggtgcatgtaaaaaga
tgcacatactgaagttaaataggacgggaaagtttgccctaaatgtagtg
gacaacctggtcgttgtccaccatcaggacacagaggtaaagtctgatgt
gggaagtggccgtcgtcgtcgtcatcatcatcgtctgtgcggggcctttt
tataggccttgtgagagctggcaagcctgcacgagggcgggaaagagcct
aagctcaaaggagtgagcagtttaaccgattccccagcagtttattaaaa
acgattccagtttggggatgcagcttgctaggtagagttcttgcctagct
tgtcacatgccagcgttgcttaaaaccagctgtgatggtgcacacctgtt
acctcagcactttgggagggagagccggggtcagaggttcaaacgaagtc
tcaaaaacccagagaaattaaaacttgagaaatatcatttgatttgatgt
ttggattcttacttgattgaaccagcagagctgggacctactgcagatcc
tgtgtcactgagtccctgggcctgtttcatgtgtgtgggcatagaaaaca
gttaccatcatgttggacacctgtgggccatcgattgtgacaggtctgct
ttccagatgttactgaacaatctggatggatgccacccccttcccctac
tttgttcagttctgagccccattttttaatggggttatttgattttctga
aaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctca
aggataaaagaacctctggtggaatcaccatgcctgacctaaagctttac
tacagagcaattgtgataaaaactgcatggtactggtatagagacagaca
agtagaccaatggaatagaattgaagacccagaaatgaacccacacacct
atggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaa
gacagcatcttcaacaattggtgctggcacaactggttgttatcgtgtag
aagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatcta
agtggatcaaggaacttcacataaaaccagagacactgaaacttatagag
gagaaagtggggaaaagccttgaagatatgggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_12338695_12339856
seq2: B6Ng01-114K18.b_48_1196

seq1  GAATTCTGTGCTTGGCTGTGTGGTGTTCTTCCAGAGGACTGTAGTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTTGGCTGTGTGGTGTTCTTCCAGAGGACTGTAGTCAAAC  50

seq1  TGTATGTAGAGAACTCAGACTGTCCCTTTAAGGCTGGGTCAGAACTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAGAGAACTCAGACTGTCCCTTTAAGGCTGGGTCAGAACTTGTA  100

seq1  ATGTAGTCAAGATGGCTTGAACTTCTGAGCCTCCTGAGTGGTGAAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCAAGATGGCTTGAACTTCTGAGCCTCCTGAGTGGTGAAATTCT  150

seq1  GAACATAGGCCACCATTCTCAGTTTATGGCCTGCAGGGGTCTCAGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGGCCACCATTCTCAGTTTATGGCCTGCAGGGGTCTCAGCCCAG  200

seq1  GGCTTTGTGCAGCTGGGCCAGCCTTACCCTGCCAGCCCAGCTACTACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTGCAGCTGGGCCAGCCTTACCCTGCCAGCCCAGCTACTACCTG  250

seq1  TCCAGCAGTAAAATGGCCAGAGGTGACTTGTCTCTCTCTCTCTGACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGTAAAATGGCCAGAGGTGACTTGTCTCTCTCTCTCTGACTAGA  300

seq1  TACGGGCAGCTTTACATCCTCTTCCTGCGCCATCACTCTCGGACGTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGCAGCTTTACATCCTCTTCCTGCGCCATCACTCTCGGACGTCTAA  350

seq1  CAGCACGGGAGCGGAGGTGGTGCTGTACCATCTCCCACGGTACGTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGGGAGCGGAGGTGGTGCTGTACCATCTCCCACGGTACGTCTGTC  400

seq1  TCATGCTCTCGGCACTCTCTGCTCTTAAGTTAAAGTAAGGCTTGCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCTCGGCACTCTCTGCTCTTAAGTTAAAGTAAGGCTTGCTGACC  450

seq1  TCTTTCTCTGACCTCTGTGTTGTCTTACAGAGAGGGTGCATGTAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTGACCTCTGTGTTGTCTTACAGAGAGGGTGCATGTAAAAAGA  500

seq1  TGCACATACTGAAGTTAAATAGGACGGGAAAGTTTGCCCTAAATGTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATACTGAAGTTAAATAGGACGGGAAAGTTTGCCCTAAATGTAGTG  550

seq1  GACAACCTGGTCGTTGTCCACCATCAGGACACAGAGGTAAAGTCTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGGTCGTTGTCCACCATCAGGACACAGAGGTAAAGTCTGATGT  600

seq1  GGGAAGTGGCCGTCGTCGTCGTCATCATCATCGTCTGTGCGGGGCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGGCCGTCGTCGTCGTCATCATCATCGTCTGTGCGGGGCCTTTT  650

seq1  TATAGGCCTTGTGAGAGCTGGCAAGCCTGCACGAGGGCGGGAAAGAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCTTGTGAGAGCTGGCAAGCCTGCACGAGGGCGGGAAAGAGCCT  700

seq1  AAGCTCAAAGGAGTGAGCAGTTTAACCGATTCCCCAGCAGTTTATTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAAGGAGTGAGCAGTTTAACCGATTCCCCAGCAGTTTATTAAAA  750

seq1  ACGATTCCAGTTTGGGGATGCAGCTTGCTAGGTAGAGTTCTTGCCTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTCCAGTTTGGGGATGCAGCTTGCTAGGTAGAGTTCTTGCCTAGCT  800

seq1  TGTCACATGCCAGCGTTGCTTAAAACCAGCTGTGATGGTGCACACCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATGCCAGCGTTGCTTAAAACCAGCTGTGATGGTGCACACCTGTT  850

seq1  ACCTCAGCAC-TTGGGAGGGAGAGCCGGGGTCAGAGGTTCAAACGAAGTC  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCACTTTGGGAGGGAGAGCCGGGGTCAGAGGTTCAAACGAAGTC  900

seq1  TCAAAAAACCCAGAGAAATTAAAAACTTTGAGAAAATATCATTTGATTTG  949
      || |||||||||||||||||||||   ||||| |||||||||||||||||
seq2  TC-AAAAACCCAGAGAAATTAAAA--CTTGAG-AAATATCATTTGATTTG  946

seq1  ATGTTTGGATTCTTACTTGATTGAACCAGCAGAGCTGGGACCTACTGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGATTCTTACTTGATTGAACCAGCAGAGCTGGGACCTACTGCAG  996

seq1  ATCCTGGTGTCACTTGAGTCCCT-GGCCTGTTTCATGTGTGTGGGCATAG  1048
      ||||| ||||||| ||||||||| ||||||||||||||||||||||||||
seq2  ATCCT-GTGTCAC-TGAGTCCCTGGGCCTGTTTCATGTGTGTGGGCATAG  1044

seq1  AAAACAGTTTACCATCATGTTTGGACACTGTTGGGCCCATCGATTTGTGA  1098
      ||||||| ||||||||||| ||||||||   |||| ||||||| ||||||
seq2  AAAACAG-TTACCATCATG-TTGGACACCTGTGGG-CCATCGA-TTGTGA  1090

seq1  CAGGTCTGCTTTTCCAGATGGTTAACTGAAC-ATCTGTAGTTGGTATGCC  1147
      ||||||||| ||||||||||  | ||||||| |||||  | ||| |||||
seq2  CAGGTCTGC-TTTCCAGATG--TTACTGAACAATCTG--GATGG-ATGCC  1134

seq1  ACACCTTTCCCCTAC  1162
      || || |||||||||
seq2  ACCCCCTTCCCCTAC  1149

seq1: chr10_104054629_104055061
seq2: B6Ng01-114K18.g_127_558 (reverse)

seq1  GTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAG  50
      || ||||||||||| ||||||||||| ||||| |||||||||||||||||
seq2  GTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAG  50

seq1  TGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTTACCTTAG  100
      |||||||||||||||||| |||||||| |||||||||||||| |||||||
seq2  TGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAG  100

seq1  TACAAGGAGATAGTAATTGATCAATTCACAATCTTCTACATGATAACAGC  150
      ||||||||||||   || |||| |||| || ||||||||| ||||||| |
seq2  TACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAAC  150

seq1  CAGTTGTGCCAGCATGATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGA  200
      ||||||||||||||  | |||||||| |||||||| ||| ||||||||||
seq2  CAGTTGTGCCAGCACCAATTGTTGAAGATGCTGTC-TTTCTTCCACTGGA  199

seq1  TAGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTC  250
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTC  249

seq1  ATCTCTGGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCTATA  300
      || ||||| ||||||||||| ||||||||||||||||||||||| |||||
seq2  ATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATA  299

seq1  CAAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTTAGGT  350
      | ||||||||||||||||||||||||||||||||||||| || |||||||
seq2  CCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGT  349

seq1  CCGGGATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTT  400
      | || ||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGACTTTTT  399

seq1  GCTATCCTAGGTTTTTTGTTATTCCAGATGAAT  433
      |||||||||||||||||||||||||||||||||
seq2  GCTATCCTAGGTTTTTTGTTATTCCAGATGAAT  432