BAC Information

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BAC

Clone NameB6Ng01-115C13
Chromosome18 (Build37)
Map Location 62,478,810 - 62,592,975
singlet/doubletdoublet
Overlap geneHtr4
Upstream genePpargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneFbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C13.bB6Ng01-115C13.g
ACCDH920496DH920497
length1,2331,133
definitionDH920496|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C13, 5' end.DH920497|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,478,810 - 62,480,063)(62,591,823 - 62,592,975)
sequence
gaattctgtcacctagaagacttgcaatgggtttgcttccctaaaacatg
aattgtcttgatacgggagctgttatcactgcacaggaaatggtgaaatt
gcctggagatcactgttcactgtgcttcttgaaggatttatcttttttgt
tgtacataaagagtttctataactatttctttatttgctatggagtgacc
tacagcatattatttccctctccagccaccttggcaactctaagcagcat
ggatcttctggtatttgctcttccattatgaaaggggtaacaccttcttg
acttttgttctatgtggtggggacattgaggtcccttcttccacttacca
tctagttgtttatataacccgggggaattaggcattctgctctgtctctt
caagtaagtttttccagatatccataagttggataggaaagttgaaagtt
gagaaatgctacttagatggctatgctgtcataaatactgttttctgaaa
gcccagatatttacattgcccttgctgataatcagacacgagcctgcttg
tgcccctaaaattcaagtactttgctttttaaacacatgtgatccgatca
aagtgttcttttaagtttttcaaggtcttaatctgacacaactctatatt
ctctttctccttgagatcttctttccacagtcatccagccttaatgggac
caggtgcccccaagaccagcaacattcctgggtatcttttgtctaagata
gatatggggctcggtgataaatttggactacagagcaaatgcagagctta
tcagcacacaaatggcaatgagaacaagcctccagtgaaacagacagaag
gccaggatgagagggaagagaggaaagagagggaagagagggaaaaaggg
aagaaagggaagaaagggaagaaagggagaaagggaagaaagggaagaag
ggaagaaagggaagaaagggagagaggagagcttgctatttagcactagc
tgagaagagttgacagtgacaggggtacactgagaagaggtttctttttc
caccattcttggtgatagcatccagtgggtgctttagtgctcactcttct
ggaagcttcaatgcaggctacatctggagttgattctctctcattctctg
tggatgtccagctatcctctttcttctgatgtgaaggtcgagcctgactt
tcctccaacgtgttctatatagcagtgttatac
gaattctctattctcacgtacaatgtgttttcaatttggctttctagaat
tttccctcttcttttgcttccttcttagctgtacctcccaaccctctatt
actggcttttcacttctgtgacatcgtctcttatgtagcttcattcccca
gacagttacatctacttgtatgggtttaaatagcatctggctctgagaat
gacttacctttgagtttgttcctgatagagacttcccatacatatcaaga
tttgacattaagctgatttcttgactgctgcattaaactatgcagcagct
acttaatacatattgcattttctgtatcccacaaatattctacctatagc
atttccaatctggaattcccaactgaaatcaagagttacactgaccaaac
tcttggttgtatctaaccatacagaagagccctcttatattaaaaataca
cctgctccaaatcacagtctccattacttccattggagctggaggacaat
tgttgttttttatccatggcatcactttagcagactccctttatgtttgt
tttttagcagaaaaaaatgaggattctttcataatcttataattctcact
actaataagctcagaccctaaagtccatatcattccaagttaaaccctat
gctttaaatgtcccacagaccaatgcattgtctcccccttctattctatt
gtattttattatttcttaagctcctctcctgcgttcttacctcctcatta
actctgtagcagcctgtcagtcacatcttgcctctggagatttatattac
ctatgttctgcctgctgtatgcttctccaagatacctacaagtatatttc
cccctgctccttaatgcctttattcaaatgtcacctcctcaatagagccc
actctaactccctatttagagtttcaatctgccacaacccaccttttaaa
gatttatatctgaaaatgtgcgtgtgggtgcatgcacccacatgtgtgca
tattcacgtgtgagaagtgcaggagccagagttttggatttctgagttgg
agttacggcagtgggagccacctggcggaatgctgttctattctattaaa
ttgtgtctctcagtcccactgaagtaaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62478810_62480063
seq2: B6Ng01-115C13.b_46_1278

seq1  GAATTCTGTCACCTAGAAGACTTGCAATGGGTTTGCTTCCCTAAAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACCTAGAAGACTTGCAATGGGTTTGCTTCCCTAAAACATG  50

seq1  AATTGTCTTGATACGGGAGCTGTTATCACTGCACAGGAAATGGTGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTTGATACGGGAGCTGTTATCACTGCACAGGAAATGGTGAAATT  100

seq1  GCCTGGAGATCACTGTTCACTGTGCTTCTTGAAGGATTTATCTTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGATCACTGTTCACTGTGCTTCTTGAAGGATTTATCTTTTTTGT  150

seq1  TGTACATAAAGAGTTTCTATAACTATTTCTTTATTTGCTATGGAGTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAAAGAGTTTCTATAACTATTTCTTTATTTGCTATGGAGTGACC  200

seq1  TACAGCATATTATTTCCCTCTCCAGCCACCTTGGCAACTCTAAGCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATATTATTTCCCTCTCCAGCCACCTTGGCAACTCTAAGCAGCAT  250

seq1  GGATCTTCTGGTATTTGCTCTTCCATTATGAAAGGGGTAACACCTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCTGGTATTTGCTCTTCCATTATGAAAGGGGTAACACCTTCTTG  300

seq1  ACTTTTGTTCTATGTGGTGGGGACATTGAGGTCCCTTCTTCCACTTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTCTATGTGGTGGGGACATTGAGGTCCCTTCTTCCACTTACCA  350

seq1  TCTAGTTGTTTATATAACCCGGGGGAATTAGGCATTCTGCTCTGTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTGTTTATATAACCCGGGGGAATTAGGCATTCTGCTCTGTCTCTT  400

seq1  CAAGTAAGTTTTTCCAGATATCCATAAGTTGGATAGGAAAGTTGAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAGTTTTTCCAGATATCCATAAGTTGGATAGGAAAGTTGAAAGTT  450

seq1  GAGAAATGCTACTTAGATGGCTATGCTGTCATAAATACTGTTTTCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCTACTTAGATGGCTATGCTGTCATAAATACTGTTTTCTGAAA  500

seq1  GCCCAGATATTTACATTGCCCTTGCTGATAATCAGACACGAGCCTGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATATTTACATTGCCCTTGCTGATAATCAGACACGAGCCTGCTTG  550

seq1  TGCCCCTAAAATTCAAGTACTTTGCTTTTTAAACACATGTGATCCGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTAAAATTCAAGTACTTTGCTTTTTAAACACATGTGATCCGATCA  600

seq1  AAGTGTTCTTTTAAGTTTTTCAAGGTCTTAATCTGACACAACTCTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTTTTAAGTTTTTCAAGGTCTTAATCTGACACAACTCTATATT  650

seq1  CTCTTTCTCCTTGAGATCTTCTTTCCACAGTCATCCAGCCTTAATGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCTTGAGATCTTCTTTCCACAGTCATCCAGCCTTAATGGGAC  700

seq1  CAGGTGCCCCCAAGACCAGCAACATTCCTGGGTATCTTTTGTCTAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCCCCAAGACCAGCAACATTCCTGGGTATCTTTTGTCTAAGATA  750

seq1  GATATGGGGCTCGGTGATAAATTTGGACTACAGAGCAAATGCAGAGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGGCTCGGTGATAAATTTGGACTACAGAGCAAATGCAGAGCTTA  800

seq1  TCAGCACACAAATGGCAATGAGAACAAGCCTCCAGTGAAACAGACAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACAAATGGCAATGAGAACAAGCCTCCAGTGAAACAGACAGAAG  850

seq1  GCCAGGATGAGAGGGAAGAGAGGAAAGAGAGGGAAGAGAGGGAAAAAAGG  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAGGATGAGAGGGAAGAGAGGAAAGAGAGGGAAGAGAGGG-AAAAAGG  899

seq1  GAAGAAAGGGAAGAAAGGGAAGAAAGGGAAGAAAGGGAAGAAAGGGAAGA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAAGAAAGGGAAGAAAGGGAAGAAAGGG-AGAAAGGGAAGAAAGGGAAG-  947

seq1  AAGGGAAGAAAGGGAAGAAAGGGAAGAGAGGAGAGCCTTGCTATTTAAGC  1000
      ||||||||||||||||||||||| ||||||||||| |||||||||| |||
seq2  AAGGGAAGAAAGGGAAGAAAGGG-AGAGAGGAGAG-CTTGCTATTT-AGC  994

seq1  ACTAGCTGAGAAAGAGTTGACAAGTGACAGGGGTAACACTGAGAAAAGAG  1050
      |||||||||| |||||||||| |||||||||||| ||||||||  |||||
seq2  ACTAGCTGAG-AAGAGTTGAC-AGTGACAGGGGT-ACACTGAG--AAGAG  1039

seq1  GTTTCTTTTTCCACCATTCTTGGTGGATAGCATCCAGTTGGTGCTTTAGT  1100
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  GTTTCTTTTTCCACCATTCTTGGT-GATAGCATCCAGTGGGTGCTTTAGT  1088

seq1  GCTCACTCTTCTGGACAGCTTCAAATGCAGGGCTCACATCTGGATGTGAT  1150
      ||||||||||||||| |||||| |||||| |||| |||||||||  ||||
seq2  GCTCACTCTTCTGGA-AGCTTC-AATGCA-GGCT-ACATCTGGAGTTGAT  1134

seq1  TCTCTCTCATTCTCTGT-GATGTCCCAGCCTATCCTCTTCCTTCTCAAAT  1199
      ||||||||||||||||| ||||| |||| |||||||||| |||||   ||
seq2  TCTCTCTCATTCTCTGTGGATGT-CCAG-CTATCCTCTTTCTTCT--GAT  1180

seq1  GTAAAAGTCCAGCCTGACTCTTTCCTTTCCAACATGTTCTATACA--TGT  1247
      || || ||| |||||||  ||||||  |||||| ||||||||| |   ||
seq2  GTGAAGGTCGAGCCTGA--CTTTCC--TCCAACGTGTTCTATATAGCAGT  1226

seq1  GTTATAC  1254
      |||||||
seq2  GTTATAC  1233

seq1: chr18_62591823_62592975
seq2: B6Ng01-115C13.g_67_1199 (reverse)

seq1  TATATTTTACTTCAGTGTGGGACTGAAGAGACACATATTAAATAAGAATA  50
      ||||||||||||||  ||||||||| ||||||||| ||| ||| ||||||
seq2  TATATTTTACTTCA--GTGGGACTG-AGAGACACA-ATTTAAT-AGAATA  45

seq1  TGTACAGCATTCTCGCCAGGTGGCTCACAACTGCCGGTAACTCCAACTCC  100
       | ||||||||| ||||||||||||| | |||||| ||||||||||||| 
seq2  -GAACAGCATTC-CGCCAGGTGGCTC-CCACTGCC-GTAACTCCAACTC-  90

seq1  AGGAAATCCAAAACCTCTGGCCTCCTTGGCAACCTTCTCACACGTGAATA  150
        ||||||||||| |||||| |||||  |||  |||||||||||||||||
seq2  -AGAAATCCAAAA-CTCTGG-CTCCT--GCA--CTTCTCACACGTGAATA  133

seq1  TGCACACATGTGGGTGCATGCACCCACACGCACAATTTTCAGATATTAAA  200
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TGCACACATGTGGGTGCATGCACCCACACGCAC-ATTTTCAGATA-TAAA  181

seq1  TCTTTAAAAGGTGGGTTGTTGGCAGATTGAAACTCTAAATAGGGAGTTAG  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTTTAAAAGGTGGGTTG-TGGCAGATTGAAACTCTAAATAGGGAGTTAG  230

seq1  AGTGGGCTCTATTGAGGAGGTGACATTTGAATAAAGGCATTAAGGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCTCTATTGAGGAGGTGACATTTGAATAAAGGCATTAAGGAGCAG  280

seq1  GGGGAAATATACTTGTAGGTATCTTGGAGAAGCATACAGCAGGCAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATATACTTGTAGGTATCTTGGAGAAGCATACAGCAGGCAGAACA  330

seq1  TAGGTAATATAAATCTCCAGAGGCAAGATGTGACTGACAGGCTGCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATATAAATCTCCAGAGGCAAGATGTGACTGACAGGCTGCTACAG  380

seq1  AGTTAATGAGGAGGTAAGAACGCAGGAGAGGAGCTTAAGAAATAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGAGGAGGTAAGAACGCAGGAGAGGAGCTTAAGAAATAATAAAA  430

seq1  TACAATAGAATAGAAGGGGGAGACAATGCATTGGTCTGTGGGACATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGAATAGAAGGGGGAGACAATGCATTGGTCTGTGGGACATTTAA  480

seq1  AGCATAGGGTTTAACTTGGAATGATATGGACTTTAGGGTCTGAGCTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGGTTTAACTTGGAATGATATGGACTTTAGGGTCTGAGCTTATT  530

seq1  AGTAGTGAGAATTATAAGATTATGAAAGAATCCTCATTTTTTTCTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGAGAATTATAAGATTATGAAAGAATCCTCATTTTTTTCTGCTAA  580

seq1  AAAACAAACATAAAGGGAGTCTGCTAAAGTGATGCCATGGATAAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACATAAAGGGAGTCTGCTAAAGTGATGCCATGGATAAAAAACA  630

seq1  ACAATTGTCCTCCAGCTCCAATGGAAGTAATGGAGACTGTGATTTGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTCCTCCAGCTCCAATGGAAGTAATGGAGACTGTGATTTGGAGC  680

seq1  AGGTGTATTTTTAATATAAGAGGGCTCTTCTGTATGGTTAGATACAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATTTTTAATATAAGAGGGCTCTTCTGTATGGTTAGATACAACCA  730

seq1  AGAGTTTGGTCAGTGTAACTCTTGATTTCAGTTGGGAATTCCAGATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGTCAGTGTAACTCTTGATTTCAGTTGGGAATTCCAGATTGGA  780

seq1  AATGCTATAGGTAGAATATTTGTGGGATACAGAAAATGCAATATGTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATAGGTAGAATATTTGTGGGATACAGAAAATGCAATATGTATTA  830

seq1  AGTAGCTGCTGCATAGTTTAATGCAGCAGTCAAGAAATCAGCTTAATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGCTGCATAGTTTAATGCAGCAGTCAAGAAATCAGCTTAATGTC  880

seq1  AAATCTTGATATGTATGGGAAGTCTCTATCAGGAACAAACTCAAAGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGATATGTATGGGAAGTCTCTATCAGGAACAAACTCAAAGGTAA  930

seq1  GTCATTCTCAGAGCCAGATGCTATTTAAACCCATACAAGTAGATGTAACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTCAGAGCCAGATGCTATTTAAACCCATACAAGTAGATGTAACT  980

seq1  GTCTGGGGAATGAAGCTACATAAGAGACGATGTCACAGAAGTGAAAAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGAATGAAGCTACATAAGAGACGATGTCACAGAAGTGAAAAGCC  1030

seq1  AGTAATAGAGGGTTGGGAGGTACAGCTAAGAAGGAAGCAAAAGAAGAGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAGAGGGTTGGGAGGTACAGCTAAGAAGGAAGCAAAAGAAGAGGG  1080

seq1  AAAATTCTAGAAAGCCAAATTGAAAACACATTGTACGTGAGAATAGAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTAGAAAGCCAAATTGAAAACACATTGTACGTGAGAATAGAGAA  1130

seq1  TTC  1153
      |||
seq2  TTC  1133