BAC Information

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BAC

Clone NameB6Ng01-116G16
Chromosome18 (Build37)
Map Location 74,165,392 - 74,216,602
singlet/doubletdoublet
Overlap geneMapk4
Upstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G16.bB6Ng01-116G16.g
ACCDH921420DH921421
length1,118788
definitionDH921420|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G16, 5' end.DH921421|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,215,478 - 74,216,602)(74,165,392 - 74,166,180)
sequence
gaattcatatgtttgtttgcaatttcagtcttaatccctgaatttcattt
gcagaattctagttatttttcaacattatagcttcaacaagaagccatat
cgccttcaacattgacattgtttccactacccctggaagtttagtcgttg
tttttgagacaaagttgctataagcccaggctgacctccgagttagccct
ggtcttccccatctcctctcaagtaccaggatacaggtattcatcacata
cctggctcattggctaagcccagcttttatagctgtgtgctgggcccgga
tattttgccttctatgtctgggattttccctttgtaatacctaagcacct
gtttttcctatttgttgtgtgttctgattttcgtttcggttcatgtttac
gttattatgtttccttgttttgttggttagtctttgtgtgctgaatattt
ctttaaaaaattatttgtgtgacttaaccatgtgtcaccagcatgtgatc
tcagcacttggaaggctaaagcaggacaagcatgaggtcagactgggcta
cagtaagaccctgactttaaaaaaatgaatgtatatataaataccacatt
ttatatcttaaaatataaatatttctacatttcaatctctgaaatcaaga
tatttttaaaactaatagattcttacatttatgtttggcagcatttttat
ttttctctgataaattaaataatgctaatgtatcatgtaattagtgatat
ttaacatttgatgacataatttgaagctttggctgttactgctaaatatg
acaagtgttctaaaaaggattttaaatggcttgcatagagttgcaggaaa
actgtctcttaggaagcttgagactctctaggtaacccagatgacatgaa
gccagactagattattttttgtttttccttatttccatttccttgctctt
ggacttctatgtttgatgtaaagcagaggccctggccttttgatcccatt
gggctgtgtagtgtttaactctcttggctgatgggaagagagtactatta
aggaggtgtggcttgttggaataggataggaataggaataggaattagga
aataggaataggaatagg
gaattctggtcactggacttggtctctgggggttatcaaggctagcgtcc
cctgatgtgcctttttttttttttttttttttttttttttttttttgggg
gaaaaacccagttcattgtgacttgcctcctgtccagcaccaatggggac
ctgtgctgagctggcttaagaaaaacacaaaactgaatccccagccagcc
cccggggcccagtctctccctgctgggaggctgctagctagaatcccccc
cccctggcctgctgggacatttacacatcagccaagacaggagtttatct
ccatgtgtttttcatcttttgggcacccaagaaactgaattagcataaaa
ttcagcgccccaggctgaaaaaggaaatgggctctttagccaggctctgg
gggtgactagacaagggtgacagctgactcagcattctttgactggggaa
ctgttgggggctgtcaagggtccttttctaaataggagttctctgaaaac
ctaaggcagtcacagttcccaaatgtcagtgaactttcagcaagggtacc
tccacacctggattccctcagccccaaaagcctgaaagcacacctgcagc
actgccctccttcccgcaacaactaactcccaacttctctatacaagcca
cgcgccaggggatacaaatttagattcagtcagaagacaaacacgaggat
catatcgaggatcatattgtcccttaatcacatgaaagaatttgcctttg
gtattagagagagagagagattgttattggagtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_74215478_74216602
seq2: B6Ng01-116G16.b_46_1163 (reverse)

seq1  CCTATTCCTATTCCTATTCCTATTCCT-ATTCCTATTCCTATTCCTATTC  49
      |||||||||||||||||     ||||| ||||||||||||||||||| ||
seq2  CCTATTCCTATTCCTAT-----TTCCTAATTCCTATTCCTATTCCTA-TC  44

seq1  CTATTCCAACAAGGCCACACCTCC-TAATAGTACTCTCTTCCCATCAGCC  98
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  CTATTCCAACAA-GCCACACCTCCTTAATAGTACTCTCTTCCCATCAGCC  93

seq1  AAGGAGAGTTAAACCACTACACAGCCCAATGGGATCAAAAGGCCAGGGCC  148
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AA-GAGAGTTAAA-CACTACACAGCCCAATGGGATCAAAAGGCCAGGGCC  141

seq1  TCTGCTTTACATCAAACATAGAAGTCCAAGAGCAAGGAAATGGAAATAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTACATCAAACATAGAAGTCCAAGAGCAAGGAAATGGAAATAAG  191

seq1  GAAAAACAAAAAATAATCTAGTCTGGCTTCATGTCATCTGGGTTACCTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAAAATAATCTAGTCTGGCTTCATGTCATCTGGGTTACCTAG  241

seq1  AGAGTCTCAAGCTTCCTAAGAGACAGTTTTCCTGCAACTCTATGCAAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCAAGCTTCCTAAGAGACAGTTTTCCTGCAACTCTATGCAAGCC  291

seq1  ATTTAAAATCCTTTTTAGAACACTTGTCATATTTAGCAGTAACAGCCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATCCTTTTTAGAACACTTGTCATATTTAGCAGTAACAGCCAAA  341

seq1  GCTTCAAATTATGTCATCAAATGTTAAATATCACTAATTACATGATACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAATTATGTCATCAAATGTTAAATATCACTAATTACATGATACAT  391

seq1  TAGCATTATTTAATTTATCAGAGAAAAATAAAAATGCTGCCAAACATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTATTTAATTTATCAGAGAAAAATAAAAATGCTGCCAAACATAAA  441

seq1  TGTAAGAATCTATTAGTTTTAAAAATATCTTGATTTCAGAGATTGAAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAATCTATTAGTTTTAAAAATATCTTGATTTCAGAGATTGAAATG  491

seq1  TAGAAATATTTATATTTTAAGATATAAAATGTGGTATTTATATATACATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATTTATATTTTAAGATATAAAATGTGGTATTTATATATACATT  541

seq1  CATTTTTTTAAAGTCAGGGTCTTACTGTAGCCCAGTCTGACCTCATGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTAAAGTCAGGGTCTTACTGTAGCCCAGTCTGACCTCATGCTT  591

seq1  GTCCTGCTTTAGCCTTCCAAGTGCTGAGATCACATGCTGGTGACACATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTTAGCCTTCCAAGTGCTGAGATCACATGCTGGTGACACATGG  641

seq1  TTAAGTCACACAAATAATTTTTTAAAGAAATATTCAGCACACAAAGACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCACACAAATAATTTTTTAAAGAAATATTCAGCACACAAAGACTA  691

seq1  ACCAACAAAACAAGGAAACATAATAACGTAAACATGAACCGAAACGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAAACAAGGAAACATAATAACGTAAACATGAACCGAAACGAAAA  741

seq1  TCAGAACACACAACAAATAGGAAAAACAGGTGCTTAGGTATTACAAAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACACACAACAAATAGGAAAAACAGGTGCTTAGGTATTACAAAGGG  791

seq1  AAAATCCCAGACATAGAAGGCAAAATATCCGGGCCCAGCACACAGCTATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCAGACATAGAAGGCAAAATATCCGGGCCCAGCACACAGCTATA  841

seq1  AAAGCTGGGCTTAGCCAATGAGCCAGGTATGTGATGAATACCTGTATCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGGCTTAGCCAATGAGCCAGGTATGTGATGAATACCTGTATCCT  891

seq1  GGTACTTGAGAGGAGATGGGGAAGACCAGGGCTAACTCGGAGGTCAGCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTGAGAGGAGATGGGGAAGACCAGGGCTAACTCGGAGGTCAGCCT  941

seq1  GGGCTTATAGCAACTTTGTCTCAAAAACAACGACTAAACTTCCAGGGGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATAGCAACTTTGTCTCAAAAACAACGACTAAACTTCCAGGGGTA  991

seq1  GTGGAAACAATGTCAATGTTGAAGGCGATATGGCTTCTTGTTGAAGCTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACAATGTCAATGTTGAAGGCGATATGGCTTCTTGTTGAAGCTAT  1041

seq1  AATGTTGAAAAATAACTAGAATTCTGCAAATGAAATTCAGGGATTAAGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAAAAATAACTAGAATTCTGCAAATGAAATTCAGGGATTAAGAC  1091

seq1  TGAAATTGCAAACAAACATATGAATTC  1125
      |||||||||||||||||||||||||||
seq2  TGAAATTGCAAACAAACATATGAATTC  1118

seq1: chr18_74165392_74166180
seq2: B6Ng01-116G16.g_68_855

seq1  GAATTCTGGTCACTGGACTTGGTCTCTGGGGGTTATCAAGGCTAGCGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCACTGGACTTGGTCTCTGGGGGTTATCAAGGCTAGCGTCC  50

seq1  CCTGATGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  CCTGATGTGCC-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG  99

seq1  GGAAAAACCCAGTTCATTGTGACTTGCCTCCTGTCCAGCACCAATGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGAAAAACCCAGTTCATTGTGACTTGCCTCCTGTCCAGCACCAATGGGGA  149

seq1  CCTGTGCTGAGCTGGCTTAGGAAAAACACAGAACTGAATCCCCAGCCAGC  200
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CCTGTGCTGAGCTGGCTTAAGAAAAACACAAAACTGAATCCCCAGCCAGC  199

seq1  CCCAGGGTCCCAGTCTCTCCCTGCTGGTAGGCTGCTAGCTAGAATCCCTC  250
      ||| ||| ||||||||||||||||||| |||||||||||||||||||| |
seq2  CCCCGGGGCCCAGTCTCTCCCTGCTGGGAGGCTGCTAGCTAGAATCCCCC  249

seq1  CACGCTGGCCTGCTGGGACATTTACACATCAGCCAAGACAGGAGTTTATC  300
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGCCTGCTGGGACATTTACACATCAGCCAAGACAGGAGTTTATC  299

seq1  TCCATGTGTTTTTCATCTTTTGGGCACCCAAGAGACTGAATTAGCATAAA  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCATGTGTTTTTCATCTTTTGGGCACCCAAGAAACTGAATTAGCATAAA  349

seq1  ATTCAGCGCCCCAGGCTGAGAGAGGAAATGGGCTCTTTAGCCAGGCTCTG  400
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  ATTCAGCGCCCCAGGCTGAAAAAGGAAATGGGCTCTTTAGCCAGGCTCTG  399

seq1  GTGGTGACTAGACAAGGCTGACAGCTGACTCAGCATTCTTTGACTGGGGA  450
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGGTGACTAGACAAGGGTGACAGCTGACTCAGCATTCTTTGACTGGGGA  449

seq1  ACTGTTGGGTGCTGTCAAGGGTCCTTTTCTAAATAGGAGTTCTCTGAAGA  500
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  ACTGTTGGGGGCTGTCAAGGGTCCTTTTCTAAATAGGAGTTCTCTGAAAA  499

seq1  CCTAAGGCAGTCACAGTTCCCAGATGTCAGTGAACTTCCAGCAAGGGTAC  550
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  CCTAAGGCAGTCACAGTTCCCAAATGTCAGTGAACTTTCAGCAAGGGTAC  549

seq1  CTCCACACCTGGATTCCCTCAGCCCCAAAAGCCTGAAAGCACACCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACCTGGATTCCCTCAGCCCCAAAAGCCTGAAAGCACACCTGCAG  599

seq1  CACTGCCCTCCTCCCCGCAACAACTAACTCCCAACTTCTCTATACAAGCC  650
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTCCTTCCCGCAACAACTAACTCCCAACTTCTCTATACAAGCC  649

seq1  ACGCGCCAGGGCATACAAATTTAGATTCAGTCAGAAGACAAACACGAGGA  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCCAGGGGATACAAATTTAGATTCAGTCAGAAGACAAACACGAGGA  699

seq1  TCATATCGAGGATCATATTGTCCCTTAATCACATGAAAGAATTTGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCGAGGATCATATTGTCCCTTAATCACATGAAAGAATTTGCCTTT  749

seq1  GGTATTAGAGAGAGAGAGAGATTGTTATTGGAGTGTGTG  789
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAGAGAGAGAGAGAGATTGTTATTGGAGTGTGTG  788