BAC Information

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BAC

Clone NameB6Ng01-117D21
Chromosome18 (Build37)
Map Location 35,846,745 - 35,899,982
singlet/doubletdoublet
Overlap geneDnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik
Upstream geneGfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik
Downstream geneLOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117D21.bB6Ng01-117D21.g
ACCDH922030DH922031
length1,176369
definitionDH922030|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D21, 5' end.DH922031|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,846,745 - 35,847,931)(35,899,616 - 35,899,982)
sequence
gaattcactctgtagaccaggctggcctccaactcagaaatctgccagcc
tttacctcccaaatgttgggattaaaggcgtgcgccatcactgcccggct
tgttcatagtcttgattaactaagaacaatactagaatccaacaactgag
aactctattgaagtgagcgttaactcctaagagttcttgacacctctcag
gtgcactgaagttgagacactgtccctagctcatgctgccaataatttag
acatgttgggacttgcgaggctggagagatggctcagaggttaagagcac
ttactgctcttatacaaaactaaggttcagttcttaacagcataatgggt
gactcacaactgcctgtaactctagtttcttgataccctattctggcctc
tctggacacctgtgctcacagagtgaacacacaaataaccacatgcatag
gcataaatgaaatttttaaaaaaaatctgttttaggggatggagctaagg
ctcagagttcaggagcatgcttaccatatgagcctcaagatctgatacac
acacacatacacacacacaccagtgttattatttcacttaagagcagcag
tttattgaaacagttcacagtactattaagttgaagtaaaaaccaaactc
ctaaatatactaatcttcaaaactccttctgctttgatgaaaacaaaagg
ctctcattggtttgtgagaagacttccatatgaatatagagaatatggag
gctggaaagatagctcagccactaaaggctgggctcacaaccaaaaatat
acgagaacatgggttaaccacatggtcccttagtgatgctttaggaacta
gagtcacaacagaaaaactgtcctcgtgatatacagggacttcttctaag
atttattttttagctgggcttggtagcacatacctttaatcccagcagtc
aggaggcagagacaggcaggtctctgtgaattaaaggccagactggtcta
tatagtgagttcaggtcagccagagctacacagagtgacatttcttcaag
taacaaaaggttattccttttatgtgtatgggcattgcctgatgtacatt
atgtacatatgcatgcatgtcacagagcctgaaagggcctgaatctcttg
gagcttggattacagggcaattgcga
gagtgcggggctgtggctgctggtgagtgactttttgaacaccttcagtt
tgggggttaggaaagaggaacagaggagggcgatctgaagcttcacctcc
cccaccctcccctgctatactcagacctggtttatggaggctggtaggaa
ggggggggggtgctttggcaggaaacaccaaaaagaataaagagctggcc
agatggctagcttcctcccagagcactgaaaactgtgctctggcaagggc
cagggctgtggttttactgaggaagcgagctgagttgcagttgtttttaa
tatttcttttttctttctccccattctgaatccattttgctagtagttac
tgaaaggttctttattgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35846745_35847931
seq2: B6Ng01-117D21.b_39_1214

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCTGCCAGCC  50

seq1  TTTACCTCCCAAATGTTGGGATTAAAGGCGTGCGCCATCACTGCCCGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCCCAAATGTTGGGATTAAAGGCGTGCGCCATCACTGCCCGGCT  100

seq1  TGTTCATAGTCTTGATTAACTAAGAACAATACTAGAATCCAACAACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAGTCTTGATTAACTAAGAACAATACTAGAATCCAACAACTGAG  150

seq1  AACTCTATTGAAGTGAGCGTTAACTCCTAAGAGTTCTTGACACCTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATTGAAGTGAGCGTTAACTCCTAAGAGTTCTTGACACCTCTCAG  200

seq1  GTGCACTGAAGTTGAGACACTGTCCCTAGCTCATGCTGCCAATAATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGAAGTTGAGACACTGTCCCTAGCTCATGCTGCCAATAATTTAG  250

seq1  ACATGTTGGGACTTGCGAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGGACTTGCGAGGCTGGAGAGATGGCTCAGAGGTTAAGAGCAC  300

seq1  TTACTGCTCTTATACAAAACTAAGGTTCAGTTCTTAACAGCATAATGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCTTATACAAAACTAAGGTTCAGTTCTTAACAGCATAATGGGT  350

seq1  GACTCACAACTGCCTGTAACTCTAGTTTCTTGATACCCTATTCTGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACAACTGCCTGTAACTCTAGTTTCTTGATACCCTATTCTGGCCTC  400

seq1  TCTGGACACCTGTGCTCACAGAGTGAACACACAAATAACCACATGCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACACCTGTGCTCACAGAGTGAACACACAAATAACCACATGCATAG  450

seq1  GCATAAATGAAATTTTTAAAAAAAATCTGTTTTAGGGGATGGAGCTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATGAAATTTTTAAAAAAAATCTGTTTTAGGGGATGGAGCTAAGG  500

seq1  CTCAGAGTTCAGGAGCATGCTTACCATATGAGCCTCAAGATCTGATACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTTCAGGAGCATGCTTACCATATGAGCCTCAAGATCTGATACAC  550

seq1  ACACACATACACACACACACCAGTGTTATTATTTCACTTAAGAGCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACACACACACACCAGTGTTATTATTTCACTTAAGAGCAGCAG  600

seq1  TTTATTGAAACAGTTCACAGTACTATTAAGTTGAAGTAAAAACCAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAACAGTTCACAGTACTATTAAGTTGAAGTAAAAACCAAACTC  650

seq1  CTAAATATACTAATCTTCAAAACTCCTTCTGCTTTGATGAAAACAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATACTAATCTTCAAAACTCCTTCTGCTTTGATGAAAACAAAAGG  700

seq1  CTCTCATTGGTTTGTGAGAAGACTTCCATATGAATATAGAGAATATGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTGGTTTGTGAGAAGACTTCCATATGAATATAGAGAATATGGAG  750

seq1  GCTGGAAAGATAGCTCAGCCACTAAAGGCTGGGCTCACAACCAAAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAGATAGCTCAGCCACTAAAGGCTGGGCTCACAACCAAAAATAT  800

seq1  ACGAGAACATGGGTTAACCACATGGTCCCTTAGTGATGCTTTAGGAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAACATGGGTTAACCACATGGTCCCTTAGTGATGCTTTAGGAACTA  850

seq1  GAGTCACAACAGAAAAACTGTCCTCGTGATATACAGGGACTTCTTCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAACAGAAAAACTGTCCTCGTGATATACAGGGACTTCTTCTAAG  900

seq1  ATTTA-TTTTTAGCTGGGCTTGGTAGCACATACC-TTAATCCCAGCAGTC  948
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTATTTTTTAGCTGGGCTTGGTAGCACATACCTTTAATCCCAGCAGTC  950

seq1  AGGAGGCAGAGACAGGCAGGTCTCTGTGAATTAAAGGCCAGACTGGTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGAGACAGGCAGGTCTCTGTGAATTAAAGGCCAGACTGGTCTA  1000

seq1  TATAGTGAGTTCCAGGTCAGCCAGAGCTACACAGAGTGACATTTCCTCAA  1048
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  TATAGTGAGTT-CAGGTCAGCCAGAGCTACACAGAGTGACATTTCTTCAA  1049

seq1  GTAAACAAAAAGTTTATTTCCTTTTATGTGTATGGGCATTTTGCCTGAAT  1098
      || ||||||| |||   |||||||||||||||||||||  ||||||| ||
seq2  GT-AACAAAAGGTT--ATTCCTTTTATGTGTATGGGCA--TTGCCTG-AT  1093

seq1  GTACATATATGTACCATATGCATGCAATGTCCACAGAGGCCTGAAGAGGG  1148
      |||||| |||||| ||||||||||| |||| |||||| ||||||| ||||
seq2  GTACAT-TATGTA-CATATGCATGC-ATGT-CACAGA-GCCTGAA-AGGG  1137

seq1  CGCTGAATCTCCTGGAGCTGGAGTTACA-GGCAATTGCGA  1187
      | ||||||||| ||||||| |  ||||| |||||||||||
seq2  C-CTGAATCTCTTGGAGCTTGGATTACAGGGCAATTGCGA  1176

seq1: chr18_35899616_35899982
seq2: B6Ng01-117D21.g_72_440 (reverse)

seq1  GACAATGAAGAGCCTTTCAGTAGCTACTAGC-AAGTGGCTTCTGAATGGG  49
      |||||| |||| |||||||||| |||||||| || ||| ||| |||||||
seq2  GACAATAAAGAACCTTTCAGTAACTACTAGCAAAATGGATTCAGAATGGG  50

seq1  GAGACTG-AAAACGAAATGTTAAAAACAACTGCAACTCAGCTCGCTTCCT  98
      ||||  | |||| ||||| |||||||||||||||||||||||||||||||
seq2  GAGAAAGAAAAAAGAAATATTAAAAACAACTGCAACTCAGCTCGCTTCCT  100

seq1  CAGTAAAACCACAGCCCTGGCCCTTGCCAGAGCACAGTTTTCAGTGCTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAACCACAGCCCTGGCCCTTGCCAGAGCACAGTTTTCAGTGCTCT  150

seq1  GGGAGGAAGCTAGCCATCTGGCCAGCTCTTTATTCTTTTTGGTGTTTCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGCTAGCCATCTGGCCAGCTCTTTATTCTTTTTGGTGTTTCCT  200

seq1  GCCAAAGCACCCCCCCCCCTTCCTACCAGCCTCCATAAACCAGGTCTGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCACCCCCCCCCCTTCCTACCAGCCTCCATAAACCAGGTCTGAG  250

seq1  TATAGCAGGGGAGGGTGGGGGAGGTGAAGCTTCAGATCGCCCTCCTCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGGGGAGGGTGGGGGAGGTGAAGCTTCAGATCGCCCTCCTCTGT  300

seq1  TCCTCTTTCCTAACCCCCAAACTGAAGGTGTTCAAAAAGTCACTCACCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCTAACCCCCAAACTGAAGGTGTTCAAAAAGTCACTCACCAG  350

seq1  CAGCCACAGCCCCGCACTC  367
      |||||||||||||||||||
seq2  CAGCCACAGCCCCGCACTC  369