BAC Information

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BAC

Clone NameB6Ng01-119N06
Chromosome18 (Build37)
Map Location 17,526,934 - 17,645,069
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119N06.bB6Ng01-119N06.g
ACCDH923938DH923939
length1,1621,050
definitionDH923938|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N06, 5' end.DH923939|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,643,904 - 17,645,069)(17,526,934 - 17,528,003)
sequence
gaattcacaatctttgcttcagactcgaaatagaaaactgagtatgtcaa
aacaccctacaatttatgggtaggtggttatcaatacttgaggctctgag
actttgagactctgtttacataggtcaagatcaaatgtatgtagccagta
taatattgaatttcttctgaaagtaaataatatatccataaattaaaact
aagaaaatatttaattactcagaatcatatagttttctttcctttattta
ccaacaactgtgccacagacagggcttaccctaaaaagtctgcattgaag
aagaagaaagcagttatccttaaagacattggctattactcaggactaga
agcagacaggaaaatcaaattggtaataaatttagaaaaatttttacata
gtgattagtactctgaagaaaatgaatgaggataataataaagtgagtag
gagaagggaaatttttatggtaagtgattactgatgaccttaaaactgaa
cttgagaaattggcttagcatatttactacatgtagacttcaaaggcaat
cctaaatataagagtcaggattttcttgccaaagagattgggagagtatt
ctgccaaggctccaattttgaacatagcagacaaggaaaatgaaatggta
atagaaatagaatactgacctacagtaaacacattgtaaagtttatagac
ataaacttacatatgcagaactgtgtctgtaggacatttattacaaggat
agtgtaatgtagatcttaaaattgccatttatctgtcacaaaaacaaaga
aaatcggaaattacacagtgaaactccagttaaagtgatgtccacagcct
aggtgtgaattctgtctgagtctgcattcatcactgtttcccatgaatct
tcacgctcacgtctttgaagcatggatccatcttgggcacagaatcatca
gtcttgtcattctgttttatctctgttctggattaatttctgaaaaaaaa
aaacaattaagcagttaatggagaaagtttacttttcagaattttgagcc
ccttccactccaactcaagccccaggctaccttgcagcagaatcgccgaa
cacccgcaagggcccgccaggaatcccaagggattctaagacctctgtga
gagtgaacacag
gaattctgcagttacgttgtgagggtttctaagaaaacatttacagaaga
tttttagtgaatgagattatatgtgttttctgattagccctgtacattat
tgaggactgactaaataactgcatcaaggtaaaagtgagactctttacta
caaagtcataagattatgagcatgttttgattataaaaggtttccaatat
catttgtaagattcttggaatgttacagttgtacagcttggaaaagagta
aagtagagggcaaaggtcatataatctatgtcccactactctggtgactt
ctttatgtgatatatttccagggaaagagaatattgtttatattcaggca
gccttcagaaggaattgtgttggctgtatttgaactcttaattctaagtc
tgagagttcagtttcctggtcctcatataattttattttattctctttct
ctgttgcctgacaaaggtttaaagtttggaggctgagacttggaaccatt
tcctggacattcacttcctatttataatctttatttatgctcctttatgt
tgtatgtctgtctgtatgtttcacacattttcttaccaattctctcttca
atctgtattgctgagatttccacaaaggtttataaatgcaagaaagttat
taagtaaaatgaacaaatttggtgatattacttttattagtagggtaaac
tagtgtgtttactactaaatattgatggaataagaaatgatctcaaatgt
aggtaaggatcttcatagaaagctcttaccttcgtgttaaatcagaaatt
ccaacaatacgttatttcttacattttttatcagaatattattttaaatg
gaattaatattttgaaaggtcaaaaagctttacttggaaatataatggga
gaatactttaatcgatgaatcttagtcttatttagaaatctgttgagttg
atacactatagaagtactttgacattgtgtgagtgtctgattcataatac
agcatataccaaaagtgagtgatatcatcacatcataatctttgtcaaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17643904_17645069
seq2: B6Ng01-119N06.b_48_1209 (reverse)

seq1  CTGTGTTCCACTCAC-CAGAGGTCTTAGAATCCCTTGGGGAATCCTGTGC  49
      ||||||| ||||| | |||||||||||||||||||| |||| ||||| ||
seq2  CTGTGTT-CACTCTCACAGAGGTCTTAGAATCCCTT-GGGATTCCTG-GC  47

seq1  GGGCCCTTGCGGGTGTCGGGCGACTCTGCTGGCAAGGTAGCCTGGGGCTT  99
      ||||||||||||||||  ||||| |||||| |||||||||||||||||||
seq2  GGGCCCTTGCGGGTGTTCGGCGATTCTGCT-GCAAGGTAGCCTGGGGCTT  96

seq1  GAG-TGGAGTGGAAGGGGCTCAAAATTCTGAAAGTAAAACTTTCTCCATT  148
      ||| |||||||||||||||||||||||||||||   ||||||||||||||
seq2  GAGTTGGAGTGGAAGGGGCTCAAAATTCTGAAAAGTAAACTTTCTCCATT  146

seq1  AACTGCTTAATTGTTTTTTTTTTTCAGAAATAAATCCAGGAACAGAGAAT  198
      ||||||||||||||||||||||||||||||| |||||| |||||||| ||
seq2  AACTGCTTAATTGTTTTTTTTTTTCAGAAATTAATCCA-GAACAGAG-AT  194

seq1  AAAACAGAATGACAAGACTGATGATTCTGTGCCCAAGATGGATCCATGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAATGACAAGACTGATGATTCTGTGCCCAAGATGGATCCATGCT  244

seq1  TCAAAGACGTGAGCGTGAAGATTCATGGGAAACAGTGATGAATGCAGACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACGTGAGCGTGAAGATTCATGGGAAACAGTGATGAATGCAGACT  294

seq1  CAGACAGAATTCACACCTAGGCTGTGGACATCACTTTAACTGGAGTTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAATTCACACCTAGGCTGTGGACATCACTTTAACTGGAGTTTCA  344

seq1  CTGTGTAATTTCCGATTTTCTTTGTTTTTGTGACAGATAAATGGCAATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATTTCCGATTTTCTTTGTTTTTGTGACAGATAAATGGCAATTT  394

seq1  TAAGATCTACATTACACTATCCTTGTAATAAATGTCCTACAGACACAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTACATTACACTATCCTTGTAATAAATGTCCTACAGACACAGTT  444

seq1  CTGCATATGTAAGTTTATGTCTATAAACTTTACAATGTGTTTACTGTAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGTAAGTTTATGTCTATAAACTTTACAATGTGTTTACTGTAGG  494

seq1  TCAGTATTCTATTTCTATTACCATTTCATTTTCCTTGTCTGCTATGTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTCTATTTCTATTACCATTTCATTTTCCTTGTCTGCTATGTTCA  544

seq1  AAATTGGAGCCTTGGCAGAATACTCTCCCAATCTCTTTGGCAAGAAAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAGCCTTGGCAGAATACTCTCCCAATCTCTTTGGCAAGAAAATC  594

seq1  CTGACTCTTATATTTAGGATTGCCTTTGAAGTCTACATGTAGTAAATATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTATATTTAGGATTGCCTTTGAAGTCTACATGTAGTAAATATG  644

seq1  CTAAGCCAATTTCTCAAGTTCAGTTTTAAGGTCATCAGTAATCACTTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAATTTCTCAAGTTCAGTTTTAAGGTCATCAGTAATCACTTACC  694

seq1  ATAAAAATTTCCCTTCTCCTACTCACTTTATTATTATCCTCATTCATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTCCCTTCTCCTACTCACTTTATTATTATCCTCATTCATTTT  744

seq1  CTTCAGAGTACTAATCACTATGTAAAAATTTTTCTAAATTTATTACCAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTACTAATCACTATGTAAAAATTTTTCTAAATTTATTACCAAT  794

seq1  TTGATTTTCCTGTCTGCTTCTAGTCCTGAGTAATAGCCAATGTCTTTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCCTGTCTGCTTCTAGTCCTGAGTAATAGCCAATGTCTTTAAG  844

seq1  GATAACTGCTTTCTTCTTCTTCAATGCAGACTTTTTAGGGTAAGCCCTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGCTTTCTTCTTCTTCAATGCAGACTTTTTAGGGTAAGCCCTGT  894

seq1  CTGTGGCACAGTTGTTGGTAAATAAAGGAAAGAAAACTATATGATTCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCACAGTTGTTGGTAAATAAAGGAAAGAAAACTATATGATTCTGA  944

seq1  GTAATTAAATATTTTCTTAGTTTTAATTTATGGATATATTATTTACTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAATATTTTCTTAGTTTTAATTTATGGATATATTATTTACTTTC  994

seq1  AGAAGAAATTCAATATTATACTGGCTACATACATTTGATCTTGACCTATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATTCAATATTATACTGGCTACATACATTTGATCTTGACCTATG  1044

seq1  TAAACAGAGTCTCAAAGTCTCAGAGCCTCAAGTATTGATAACCACCTACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAGTCTCAAAGTCTCAGAGCCTCAAGTATTGATAACCACCTACC  1094

seq1  CATAAATTGTAGGGTGTTTTGACATACTCAGTTTTCTATTTCGAGTCTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTGTAGGGTGTTTTGACATACTCAGTTTTCTATTTCGAGTCTGA  1144

seq1  AGCAAAGATTGTGAATTC  1166
      ||||||||||||||||||
seq2  AGCAAAGATTGTGAATTC  1162

seq1: chr18_17526934_17528003
seq2: B6Ng01-119N06.g_70_1119

seq1  GAATTCTGCAGTTACGTTGTGAGGGTTTCTAAGAAAACATTTACAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTTACGTTGTGAGGGTTTCTAAGAAAACATTTACAGAAGA  50

seq1  TTTTTAGTGAATGAGATTATATGTGTTTTCTGATTAGCCCTGTACATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGAATGAGATTATATGTGTTTTCTGATTAGCCCTGTACATTAT  100

seq1  TGAGGACTGACTAAATAACTGCATCAAGGTAAAAGTGAGACTCTTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGACTAAATAACTGCATCAAGGTAAAAGTGAGACTCTTTACTA  150

seq1  CAAAGTCATAAGATTATGAGCATGTTTTGATTATAAAAGGTTTCCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATAAGATTATGAGCATGTTTTGATTATAAAAGGTTTCCAATAT  200

seq1  CATTTGTAAGATTCTTGGAATGTTACAGTTGTACAGCTTGGAAAAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAGATTCTTGGAATGTTACAGTTGTACAGCTTGGAAAAGAGTA  250

seq1  AAGTAGAGGGCAAAGGTCATATAATCTATGTCCCACTACTCTGGTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGGGCAAAGGTCATATAATCTATGTCCCACTACTCTGGTGACTT  300

seq1  CTTTATGTGATATATTTCCAGGGAAAGAGAATATTGTTTATATTCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGATATATTTCCAGGGAAAGAGAATATTGTTTATATTCAGGCA  350

seq1  GCCTTCAGAAGGAATTGTGTTGGCTGTATTTGAACTCTTAATTCTAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGAAGGAATTGTGTTGGCTGTATTTGAACTCTTAATTCTAAGTC  400

seq1  TGAGAGTTCAGTTTCCTGGTCCTCATATAATTTTATTTTATTCTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTCAGTTTCCTGGTCCTCATATAATTTTATTTTATTCTCTTTCT  450

seq1  CTGTTGCCTGACAAAGGTTTAAAGTTTGGAGGCTGAGACTTGGAACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTGACAAAGGTTTAAAGTTTGGAGGCTGAGACTTGGAACCATT  500

seq1  TCCTGGACATTCACTTCCTATTTATAATCTTTATTTATGCTCCTTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACATTCACTTCCTATTTATAATCTTTATTTATGCTCCTTTATGT  550

seq1  TGTATGTCTGTCTGTATGTTTCACACATTTTCTTACCAATTCTCTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCTGTCTGTATGTTTCACACATTTTCTTACCAATTCTCTCTTCA  600

seq1  ATCTGTATTGCTGAGATTTCCACAAAGGTTTATAAATGCAAGAAAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTGCTGAGATTTCCACAAAGGTTTATAAATGCAAGAAAGTTAT  650

seq1  TAAGTAAAATGAACAAATTTGGTGATATTACTTTTATTAGTAGGGTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAATGAACAAATTTGGTGATATTACTTTTATTAGTAGGGTAAAC  700

seq1  TAGTGTGTTTACTACTAAATATTGATGGAATAAGAAATGATCTCAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTTTACTACTAAATATTGATGGAATAAGAAATGATCTCAAATGT  750

seq1  AGGTAAGGATCTTCATAGAAAGCTCTTACCTTCGTGTTAAATCAGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGATCTTCATAGAAAGCTCTTACCTTCGTGTTAAATCAGAAATT  800

seq1  CCAACAATACGTTATTTCTTACATTTTTTATCAGAATATTATTTTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATACGTTATTTCTTACATTTTTTATCAGAATATTATTTTAAATG  850

seq1  GAATTAATAATTTTGAAAGGTCAAAAAGCTTTACTTGGAAATATAATGGG  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAT-ATTTTGAAAGGTCAAAAAGCTTTACTTGGAAATATAATGGG  899

seq1  AGAATACTTTAATCGATGAATCTTAGTCTTATTTTAGAAATCTGTTGAAG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AGAATACTTTAATCGATGAATCTTAGTCTTA-TTTAGAAATCTGTTG-AG  947

seq1  TTGATTACACTATTAGAAGTACTTTGACATTGTGTGAGTGTTCTGATTCA  1000
      |||| ||||||| ||||||||||||||||||||||||||| |||||||||
seq2  TTGA-TACACTA-TAGAAGTACTTTGACATTGTGTGAGTG-TCTGATTCA  994

seq1  TAAATTAACAGCATATTACCAAAAAGTGAGTGGATAATCATCAACAATCA  1050
      |||    |||||||| |||| |||||||||| ||| |||||||     ||
seq2  TAA---TACAGCATA-TACC-AAAAGTGAGT-GAT-ATCATCA-----CA  1032

seq1  TAAAAATCTTTGGTTCAAAA  1070
      | | ||||||||  ||||||
seq2  TCATAATCTTTG--TCAAAA  1050