BAC Information

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BAC

Clone NameB6Ng01-123A09
Chromosome18 (Build37)
Map Location 89,138,395 - 89,139,317
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneRttn, Cd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123A09.g
ACCDH926302
length915
definitionDH926302|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccacctgcctgaaccgggttaacttctctgacattcaaactttg
accatatctgtttccttgccaagatacctttgtcagtccttttggcaacc
cactggaagacagttaagggccgtggatgaccataacatctctgatcatc
tttgagatatgatgacagagttgtcactgattgatttcactgatcttagt
aatgttcagccttacctttttttttttttaaatgccagaaaacattggaa
atgagccttttctgaagccaggtatactcatgactacggccaccatagtg
aatagaaaggatttttactatgggtgtgtgctttttaaacagtagaacta
aaaaactgaaaattgatttttttttgaaggaggattggctcaactatact
tagataatacaatataaacaataatcacattttagatgagtttctttgcc
ctgaatgcagtaaagattacttaatgcgtttgcctgattataaaagccac
tctagatgaatattcttatttcaaaaatcagaaatccctattctccaata
tctgaaatttggggtacagatgctgcaggttattgtgaagagttgaacac
ctccaactgatttcctgtgtaaaagtgctgttaaacggctgaatagttgg
ccctgtggctaagagtgcttactgctcttcccgagcatctgagttcatat
actatcaacagagcaggcagctccccacctcctgctccgggagaagcaat
gacgcaaggacttattatataccaaaccgagcatactcgctctgtcgcac
tttctctctccctcccacatcatatgtacatcacactcacaccttccaca
cacttacacatcccatcactcgtatgcactttcacacagatatcacacta
tcacacacgaaaatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89138395_89139317
seq2: B6Ng01-123A09.g_66_980

seq1  GAATTCCCACCTGCCTGAACCAAGTTAACTTCTCTGACATTCAAACTTTG  50
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  GAATTCCCACCTGCCTGAACCGGGTTAACTTCTCTGACATTCAAACTTTG  50

seq1  ACCATATCTGTTTCCTTGCCAAGATACCTTTGTCAGTCCTTTTGGCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATCTGTTTCCTTGCCAAGATACCTTTGTCAGTCCTTTTGGCAACC  100

seq1  CACTGGAAGACAGTTAAGGGCCGTGGATGACCATAACATCTCTGATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAGACAGTTAAGGGCCGTGGATGACCATAACATCTCTGATCATC  150

seq1  TTTGAGATATGATGACAGAGTTGTCACTGATTGATTTCACTGATCTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATATGATGACAGAGTTGTCACTGATTGATTTCACTGATCTTAGT  200

seq1  AATGTTCAGCCTTACCTTTTTTTTTTTTTAAATGCCAGAAAACATTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAGCCTTACCTTTTTTTTTTTTTAAATGCCAGAAAACATTGGAA  250

seq1  ATGAGCCTTTTCTGAAGCCAGGTATACTCATGACTACAGCCACAATAGTG  300
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  ATGAGCCTTTTCTGAAGCCAGGTATACTCATGACTACGGCCACCATAGTG  300

seq1  AATAGAAAGGATTTTTACTATGGGTGTGTGCTTTTTAAACAGTAGAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGGATTTTTACTATGGGTGTGTGCTTTTTAAACAGTAGAACTA  350

seq1  AGAAACTGAAGATTGATTTTTTTTTGAGGGAGGATTGTCAGAACAATACT  400
      | |||||||| |||||||||||||||| ||||||||| |  ||| |||||
seq2  AAAAACTGAAAATTGATTTTTTTTTGAAGGAGGATTGGCTCAACTATACT  400

seq1  TAGATAATACAATATAAACAATAATCACATTTTAGATGAGTTTCTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TAGATAATACAATATAAACAATAATCACATTTTAGATGAGTTTCTTTGCC  450

seq1  TTGAATGCAGTAAAGATTACTTAATGCTTTTGCCTGATTATAAAAGCCAC  500
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGAATGCAGTAAAGATTACTTAATGCGTTTGCCTGATTATAAAAGCCAC  500

seq1  TCAGGATGAATATTCTTATTTCAAAAATCAGAAATCCCAAATTCTCCAAT  550
      ||  ||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TCTAGATGAATATTCTTATTTCAAAAATCAGAAATCCC-TATTCTCCAAT  549

seq1  ATCTGAAATTTGGGGTACAGATGCTGCACAGTTATTGTGAAGAGTTGAAC  600
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATCTGAAATTTGGGGTACAGATGCTGCA-GGTTATTGTGAAGAGTTGAAC  598

seq1  ACCTCAAACTGATTTCATGTATAAAAGTGCTGTAAAAGGGCTGAAGAGTT  650
      ||||| |||||||||| ||| |||||||||||| ||| ||||||| ||||
seq2  ACCTCCAACTGATTTCCTGTGTAAAAGTGCTGTTAAACGGCTGAATAGTT  648

seq1  GGCTCTGTGGCTAAGAGTGCTTACTGCTCTTTCCAAGCATCTGAGTTCTT  700
      ||| ||||||||||||||||||||||||||| || ||||||||||||| |
seq2  GGCCCTGTGGCTAAGAGTGCTTACTGCTCTTCCCGAGCATCTGAGTTCAT  698

seq1  ATCCTAGCACCAACAGCAGGCAGCTCAACATCTCCTGCTCCAGGAGATGC  750
      || ||| || | | ||||||||||||  || |||||||||| ||||| ||
seq2  ATACTATCAAC-AGAGCAGGCAGCTCCCCACCTCCTGCTCCGGGAGAAGC  747

seq1  AATGCCTCTGAAACCTATTCATATACCAAACCATGCATACTCTCTCTCTC  800
      |||| | |    || |||| ||||||||||||  |||||||| |||| ||
seq2  AATGACGCAAGGACTTATT-ATATACCAAACCGAGCATACTCGCTCTGTC  796

seq1  TCTCTTTCTCTCTCTCTCTCACATCATATGTACATCACACTCACACATAC  850
       | ||||||||||| ||| ||||||||||||||||||||||||||| | |
seq2  GCACTTTCTCTCTCCCTCCCACATCATATGTACATCACACTCACACCTTC  846

seq1  CACACACATTACACAAGCACATCACTCATATACACATTACACACAAATAT  900
      ||||||| |||||| | | |||||||| ||| ||| || |||||| ||||
seq2  CACACAC-TTACAC-ATCCCATCACTCGTATGCAC-TTTCACACAGATAT  893

seq1  CACACAAATCACACACGAAAATG  923
      |||||  ||||||||||||||||
seq2  CACAC-TATCACACACGAAAATG  915