BAC Information

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BAC

Clone NameB6Ng01-124A07
Chromosome18 (Build37)
Map Location 27,082,670 - 27,232,313
singlet/doubletdoublet
Overlap geneEG665977
Upstream geneLOC100041274
Downstream geneEG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A07.bB6Ng01-124A07.g
ACCDH927033DH927034
length1,1391,039
definitionDH927033|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A07, 5' end.DH927034|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,082,670 - 27,083,832)(27,231,264 - 27,232,313)
sequence
gaattcctcactcataattgcactttccatatcatacttccctaagcatg
tcctcccattttctcccaatttaatctttcacagagggtcatagcatcaa
acaatatctcacacagaaatacaaaagaagacatggatagatgctctgag
aacattacctgctaggtttcccttcctgaactcgtccttcttacttctgc
tttcatgtttgtgttggtagctgttctccccacctaggagtttagttttg
ctacaagaatagctcctctataaggacgaaaatgggaggagcacaagcac
aagttgttattgtagctttgaactaagaaatcctcctgcttcctttttat
gaaatgtattaaacttcctaatggagaagtcagagtacacatatacacat
gcctaatgaactctagtatcacgggtagcagagaaattactagagacgtt
ctataagaatctgaaagagtcttacattcaattatttttctatttactat
gtgataagaaatagaagaatatatatatatatacatatatcatatatata
tacatatatcatatatatatgatacaggaaaagggagggcaagcctaatt
ctagatgtgaagaacagtttcaattgtttactttggtaatatttaaaatc
ataagagtggtggaactctgggcatgttgtggtggatcatcttgataagt
gtatgtaagataggacgatatgcccattctgggtggtaccataccctact
cttggatcatagactgtatcgaaagatagtatgagctaatcatgggcatc
aagttctctttacttcttgaacatgcaagccgtgtgatctgttgtgccaa
actcttcttactatggctgtgtcctcaatctatgaactaggaataatctt
tcttatgtttttcagggtacctttgtatcaaaagaaaaacaacaaagaca
ctggaataaaaacaaaatactataactaatacttgtatatagctatttac
ccattgcagtattttttcttatttactggacattataatacatgtagcat
tattattacatttaggaatatttgaaagcatcctatagaagtattctagt
cactatggtttcagacatctgtcagatgtcttaggcaaa
gaattcttaaaagatcatgtaaacattctcctggagcctgctgcctgcta
gagccaagggctttgtcagccacgagccagcagcagctcagtgctgggct
gtgtttttgcaagtacaagacagaaaatccatgtaattacttctgacgcc
caagaagctgtgccgcctgacagagcagcatgtggaggaagcagtttgtc
agacctctgctgactaattccctgctccacctgaggttgtgtgtgagtga
ctagcgtagtggtatgagcatacatgtgtttgtaagtcctaccaacagga
ataccaatatttaatttggattaagtttatcctaatttgggggtgatctt
gacaggtttcaccacaattcaggagaaacctggactttagaagaccctta
aggtacagaaaggtaaatttagtccagtgtgatagtcacaaaattgccac
acactgcaacatcttagaagcagactgaaagactatccctagccacattc
aagatattcctctcagaagggaacccaggttgtttgaaagctaagagcac
ctttgataaactgagataaagatgagagacactttaataaacctggaggc
tgggaggtctcggcaagtttcagtgaagatgcagctgctttcagaatgtg
ccagattaacctgaatattaaagggaatatcaaaggaatgttgaatattt
ttcaatggaacaatatatctccacaaacaaaattctataggcccaacgca
acacaaagtgttgagttttcttaacacatagcatttctccacctttctta
aaaaaattgtaactccatcatctccatcatgccagttcaggaggctgaac
tttggagacagcaaagtactgttgaatgtcaaaagactgcatgtgccggt
gtggtgagcacacctttatcccacacttgggaggcagagcaggcagattt
ctgagtcaggcagcctgtctacagagtggagttcagacgccagggctata
cgatgaagagaaccctgtctcgaaaaacaaaattaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27082670_27083832
seq2: B6Ng01-124A07.b_33_1172

seq1  GGAATTCCTCACTCATAATTGCACTTTCCATATCATACTTCCCTAAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTCACTCATAATTGCACTTTCCATATCATACTTCCCTAAGCAT  50

seq1  GTCCTCCCATTTTCTCCCAATTTAATCTTTCACAGAGGGTCATAGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCCATTTTCTCCCAATTTAATCTTTCACAGAGGGTCATAGCATCA  100

seq1  AACAATATCTCACACAGAAATACAAAAGAAGACATGGATAGATGCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATCTCACACAGAAATACAAAAGAAGACATGGATAGATGCTCTGA  150

seq1  GAACATTACCTGCTAGGTTTCCCTTCCTGAACTCGTCCTTCTTACTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTACCTGCTAGGTTTCCCTTCCTGAACTCGTCCTTCTTACTTCTG  200

seq1  CTTTCATGTTTGTGTTGGTAGCTGTTCTCCCCACCTAGGAGTTTAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTTTGTGTTGGTAGCTGTTCTCCCCACCTAGGAGTTTAGTTTT  250

seq1  GCTACAAGAATAGCTCCTCTATAAGGACGAAAATGGGAGGAGCACAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGAATAGCTCCTCTATAAGGACGAAAATGGGAGGAGCACAAGCA  300

seq1  CAAGTTGTTATTGTAGCTTTGAACTAAGAAATCCTCCTGCTTCCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTTATTGTAGCTTTGAACTAAGAAATCCTCCTGCTTCCTTTTTA  350

seq1  TGAAATGTATTAAACTTCCTAATGGAGAAGTCAGAGTACACATATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTATTAAACTTCCTAATGGAGAAGTCAGAGTACACATATACACA  400

seq1  TGCCTAATGAACTCTAGTATCACGGGTAGCAGAGAAATTACTAGAGACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATGAACTCTAGTATCACGGGTAGCAGAGAAATTACTAGAGACGT  450

seq1  TCTATAAGAATCTGAAAGAGTCTTACATTCAATTATTTTTCTATTTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGAATCTGAAAGAGTCTTACATTCAATTATTTTTCTATTTACTA  500

seq1  TGTGATAAGAAATAGAAGAATATATATATATATACATATATCATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAGAAATAGAAGAATATATATATATATACATATATCATATATAT  550

seq1  ATACATATATCATATATATATGATACAGGAAAAGGGAGGGCAAGCCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATCATATATATATGATACAGGAAAAGGGAGGGCAAGCCTAAT  600

seq1  TCTAGATGTGAAGAACAGTTTCAATTGTTTACTTTGGTAATATTTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGTGAAGAACAGTTTCAATTGTTTACTTTGGTAATATTTAAAAT  650

seq1  CATAAGAGTGGTGGAACTCTGGGCATGTTGTGGTGGATCATCTTGATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGTGGTGGAACTCTGGGCATGTTGTGGTGGATCATCTTGATAAG  700

seq1  TGTATGTAAGATAGGACGATATGCCCATTCTGGGTGGTACCATACCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAAGATAGGACGATATGCCCATTCTGGGTGGTACCATACCCTAC  750

seq1  TCTTGGATCATAGACTGTATCGAAAGATAGTATGAGCTAATCATGGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATCATAGACTGTATCGAAAGATAGTATGAGCTAATCATGGGCAT  800

seq1  CAAGTTCTCTTTACTTCTTGAACATGCAAGCCGTGTGATCTGTTGTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTCTTTACTTCTTGAACATGCAAGCCGTGTGATCTGTTGTGCCA  850

seq1  AACTCTTCTTACTATGGCTGTGTCCTCAATCTATGAACTAGGAATAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTTACTATGGCTGTGTCCTCAATCTATGAACTAGGAATAATCT  900

seq1  TTCTTATGTTTTTCAGGGTACCTTTGTATCAAAAAGAAAAACAACAAAGA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTTATGTTTTTCAGGGTACCTTTGTATC-AAAAGAAAAACAACAAAGA  949

seq1  CACTGGAATAAAAACAAAATACTATTAACTAAATACTTGTATAATAGCTA  1000
      |||||||||||||||||||||||| ||||| ||||||||||| |||||||
seq2  CACTGGAATAAAAACAAAATACTA-TAACT-AATACTTGTAT-ATAGCTA  996

seq1  ATTTTACCCATTGCAAGTATTTTTTCATATATACTGGACAATATAAATAC  1050
        |||||||||||| ||||||||||| ||| ||||||||| ||| |||||
seq2  --TTTACCCATTGC-AGTATTTTTTCTTATTTACTGGACATTAT-AATAC  1042

seq1  ATGTAGCATTAATTAATTTACATTTAGTAATATTTGAAAAAGCATCCTAA  1100
      |||||||||| ||||  |||||||||| ||||||||  ||||||||||| 
seq2  ATGTAGCATT-ATTA--TTACATTTAGGAATATTTG--AAAGCATCCTA-  1086

seq1  TTAGAAGTAATACAAAGTCACTATAGGTTCAAGGACATCCTGGCAAGAAT  1150
       |||||||| |    ||||||||| | ||||  ||||| ||| ||   ||
seq2  -TAGAAGTATT--CTAGTCACTATGGTTTCA--GACAT-CTGTCA--GAT  1128

seq1  GTTCTTAGGCAAA  1163
      | |||||||||||
seq2  G-TCTTAGGCAAA  1140

seq1: chr18_27231264_27232313
seq2: B6Ng01-124A07.g_68_1106 (reverse)

seq1  TATTTATTTTTGTTTTTCGAGACAGGGTTTCTCTTCTCTGTATAGCCCTG  50
      |||||| |||||||||||||||||||| ||||||||   |||||||||||
seq2  TATTTAATTTTGTTTTTCGAGACAGGG-TTCTCTTCATCGTATAGCCCTG  49

seq1  GCTGTCCTGGAACT-CACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAA  99
      || |||   ||||| ||||||||||| |||||| ||||   |||||||||
seq2  GC-GTC--TGAACTCCACTCTGTAGA-CAGGCT-GCCT--GACTCAGAAA  92

seq1  TCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCTCCACCA  149
      |||||||| |||||||||||||||| ||||| |||||||||||| |||||
seq2  TCTGCCTG-CTCTGCCTCCCAAGTG-TGGGA-TAAAGGTGTGCT-CACCA  138

seq1  CACCGGCACATGCAGTCTTTTGACATTCAACAGTACTTTGCTGTCTCCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCACATGCAGTCTTTTGACATTCAACAGTACTTTGCTGTCTCCAA  188

seq1  AGTTCAGCCTCCTGAACTGGCATGATGGAGATGATGGAGTTACAATTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCCTCCTGAACTGGCATGATGGAGATGATGGAGTTACAATTTTT  238

seq1  TTAAGAAAGGTGGAGAAATGCTATGTGTTAAGAAAACTCAACACTTTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGGTGGAGAAATGCTATGTGTTAAGAAAACTCAACACTTTGTG  288

seq1  TTGCGTTGGGCCTATAGAATTTTGTTTGTGGAGATATATTGTTCCATTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTGGGCCTATAGAATTTTGTTTGTGGAGATATATTGTTCCATTGA  338

seq1  AAAATATTCAACATTCCTTTGATATTCCCTTTAATATTCAGGTTAATCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCAACATTCCTTTGATATTCCCTTTAATATTCAGGTTAATCTG  388

seq1  GCACATTCTGAAAGCAGCTGCATCTTCACTGAAACTTGCCGAGACCTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTCTGAAAGCAGCTGCATCTTCACTGAAACTTGCCGAGACCTCCC  438

seq1  AGCCTCCAGGTTTATTAAAGTGTCTCTCATCTTTATCTCAGTTTATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAGGTTTATTAAAGTGTCTCTCATCTTTATCTCAGTTTATCAAA  488

seq1  GGTGCTCTTAGCTTTCAAACAACCTGGGTTCCCTTCTGAGAGGAATATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTTAGCTTTCAAACAACCTGGGTTCCCTTCTGAGAGGAATATCT  538

seq1  TGAATGTGGCTAGGGATAGTCTTTCAGTCTGCTTCTAAGATGTTGCAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGGCTAGGGATAGTCTTTCAGTCTGCTTCTAAGATGTTGCAGTG  588

seq1  TGTGGCAATTTTGTGACTATCACACTGGACTAAATTTACCTTTCTGTACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAATTTTGTGACTATCACACTGGACTAAATTTACCTTTCTGTACC  638

seq1  TTAAGGGTCTTCTAAAGTCCAGGTTTCTCCTGAATTGTGGTGAAACCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTCTTCTAAAGTCCAGGTTTCTCCTGAATTGTGGTGAAACCTGT  688

seq1  CAAGATCACCCCCAAATTAGGATAAACTTAATCCAAATTAAATATTGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCACCCCCAAATTAGGATAAACTTAATCCAAATTAAATATTGGTA  738

seq1  TTCCTGTTGGTAGGACTTACAAACACATGTATGCTCATACCACTACGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTGGTAGGACTTACAAACACATGTATGCTCATACCACTACGCTA  788

seq1  GTCACTCACACACAACCTCAGGTGGAGCAGGGAATTAGTCAGCAGAGGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCACACACAACCTCAGGTGGAGCAGGGAATTAGTCAGCAGAGGTC  838

seq1  TGACAAACTGCTTCCTCCACATGCTGCTCTGTCAGGCGGCACAGCTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACTGCTTCCTCCACATGCTGCTCTGTCAGGCGGCACAGCTTCTT  888

seq1  GGGCGTCAGAAGTAATTACATGGATTTTCTGTCTTGTACTTGCAAAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTCAGAAGTAATTACATGGATTTTCTGTCTTGTACTTGCAAAAACA  938

seq1  CAGCCCAGCACTGAGCTGCTGCTGGCTCGTGGCTGACAAAGCCCTTGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGCACTGAGCTGCTGCTGGCTCGTGGCTGACAAAGCCCTTGGCT  988

seq1  CTAGCAGGCAGCAGGCTCCAGGAGAATGTTTACATGATCTTTTAAGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGCAGCAGGCTCCAGGAGAATGTTTACATGATCTTTTAAGAATT  1038

seq1  C  1050
      |
seq2  C  1039