BAC Information

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BAC

Clone NameB6Ng01-125M05
Chromosome18 (Build37)
Map Location 8,775,975 - 8,814,342
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
Downstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M05.bB6Ng01-125M05.g
ACCDH928307DH928308
length1,1741,071
definitionDH928307|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M05, 5' end.DH928308|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,775,975 - 8,777,150)(8,813,247 - 8,814,342)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgcccggccaggaagaacacagcaaaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaagagtgtaagaagcaag
agagagagaaaacgaaaccccgtccctattaaggagaattatccttcgcc
taggacgtgtcactccctgattggctgcagcccatcggccgagttgacgt
cacggggaaggcagagcacatggagtggagaaccaccctcggcacatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacagttacatgatcaaaagggctgaa
aataggtactgatatgtgtgaacaaagctaccgtcaaaagacatggttat
taaacaaaagtcttcatgtcaggcacaagccattgaatcattgatcaggg
agaatcaagaggcactcaaataacataaggcattgcttggtgattcacca
gaactagatgatgagtctctgttactaaagacagctctcactttgaaagc
aacacaaaaataaatcaacctctactgatcagagagacctcctggcaact
ttcatagttgccagaagatgctacaaggctgctggtgcagaaaggatact
atggctttatctagcagtggtccatgcatggtgttgcctctctggttagt
ggcattaacctgggtgagtggagcctaaaaataagacagactaaattctc
atgcaatagccatcttacttaggatatcagacatttattattcctagggc
attcttgagagttaggcaaagtcatatgagaagtcaagctatatgagttc
aggctgtatatagtcacaagggcaagtcatctgagattaggttatataca
ggtcaggaggacacttatgcttagaatgtcattctgaatgggtaggaaga
aggagtaatctaaagtaaactcacttcgaattatatatcttgggaggtaa
gaagccacatttcaagaaacaaat

gaattctttcagtagttctcagagcttcttgctgcagacaccagttgcaa
tggctatccaccacttatgaactcttactctggaaacatgagtcaaaata
tactctttcttccctaagttgattttagtcacagttacaaaaagtaattc
atgcagaagagataaacataggcgtgcagagtggagtatatatagtcctt
tgcacctttccccaggagtgatatggctaagtcatatttctaactttttt
gaaaaaaatctccacatttatttccagagtggctgagctagcttatgctc
ccaccaacaatgattaatgattcctcttacaaaattcatacaaagcactt
tatataaataaatgaaatagacatatatatatatatatatatatatatat
atatatatatgaaatctaaccattctaaaattgatatgatcaagtctgtg
attttttaagattctttaatctccactcatttccacacttactctcatgt
cttagctttaaaaaggtgcccttagtaaccacaggtcttcaggtcatgag
gtcctgggaatctgaatgaaactggtctaatcatggagaagtagaaatat
gtctcttcccgatggttccccactaaaacatcagccagcttaagaaaatc
ctgggactgacctcagtttgtagattgctctgtacatgcaaccctaagtt
ttataccaaacacaaacttaccatggtggtggtgaacatctgcagtcaca
gcacttgggaggcagaagcaagaggatgaggagttgaaaggtcactttca
gctatataatgagttcaagttcagtttgtgatacacatgactctgtctaa
aaaaaaaaaaagaaatctcttaagggtttggagtgagcagtactgatttt
aggtgcttcacttaggaagtcaaggtgtactcaagccaggctcttagcag
ctaagatcaagtagacttgctgtcttgtgacttgctcaagtcagtgacgt
gactccctaggctctgatagagaaagtgacttatgaggcacaagattttc
ttcctagtaatcagatgctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_8775975_8777150
seq2: B6Ng01-125M05.b_49_1222

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGCCCGGCCAGGAAGAACACAGCAAACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGCCCGGCCAGGAAGAACACAGCAAACCAGAATCTTCTGC  200

seq1  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250

seq1  AGAGAGAGAAAACGAAACCCCGTCCCTATTAAGGAGAATTATCCTTCGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAACGAAACCCCGTCCCTATTAAGGAGAATTATCCTTCGCC  300

seq1  TAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGT  350

seq1  CACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCG  400

seq1  CAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAA  450

seq1  CGGCGAATGTGGGCGCGGCTCCCAACAGTTACATGATCAAAAGGGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGAATGTGGGCGCGGCTCCCAACAGTTACATGATCAAAAGGGCTGAA  500

seq1  AATAGGTACTGATATGTGTGAACAAAGCTACCGTCAAAAGACATGGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTACTGATATGTGTGAACAAAGCTACCGTCAAAAGACATGGTTAT  550

seq1  TAAACAAAAGTCTTCATGTCAGGCACAAGCCATTGAATCATTGATCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAGTCTTCATGTCAGGCACAAGCCATTGAATCATTGATCAGGG  600

seq1  AGAATCAAGAGGCACTCAAATAACATAAGGCATTGCTTGGTGATTCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAAGAGGCACTCAAATAACATAAGGCATTGCTTGGTGATTCACCA  650

seq1  GAACTAGATGATGAGTCTCTGTTACTAAAGACAGCTCTCACTTTGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGATGATGAGTCTCTGTTACTAAAGACAGCTCTCACTTTGAAAGC  700

seq1  AACACAAAAATAAATCAACCTCTACTGATCAGAGAGACCTCCTGGCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAAATAAATCAACCTCTACTGATCAGAGAGACCTCCTGGCAACT  750

seq1  TTCATAGTTGCCAGAAGATGCTACAAGGCTGCTGGTGCAGAAAGGATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTTGCCAGAAGATGCTACAAGGCTGCTGGTGCAGAAAGGATACT  800

seq1  ATGGCTTTATCTAGCAGTGGTCCATGCATGGTGTTGCCTCTCTGGTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTATCTAGCAGTGGTCCATGCATGGTGTTGCCTCTCTGGTTAGT  850

seq1  GGCATTAACCTGGGTGAGTGGAGCCTAAAAATAAGACAGACTAAATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAACCTGGGTGAGTGGAGCCTAAAAATAAGACAGACTAAATTCTC  900

seq1  ATGCAATAGCCATCTTACTTAGGATATCAGACATTTATTATTCCTAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATAGCCATCTTACTTAGGATATCAGACATTTATTATTCCTAGGGC  950

seq1  ATTC-TGAGAGTTAGGCAAAGTCATATGAGAAAGTCAAGCTATATGAGTT  999
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTCTTGAGAGTTAGGCAAAGTCATATGAG-AAGTCAAGCTATATGAGTT  999

seq1  CAGGCTGTATATAGTCACAAGGGCAAGGTCATCTGAGATTAGGTTATATA  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGCTGTATATAGTCACAAGGGCAA-GTCATCTGAGATTAGGTTATATA  1048

seq1  CAAGTCAGGAGGACAACTTATGCTTAGAAATGTCATTCTGAATGGGTAGG  1099
      || ||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CAGGTCAGGAGGAC-ACTTATGCTTAG-AATGTCATTCTGAATGGGTAGG  1096

seq1  AAG-ATGAGTAATCTAAAGTAAACTCACTCCGAATTAATATATCTGGGAG  1148
      ||| | ||||||||||||||||||||||| |||||| |||||||| ||  
seq2  AAGAAGGAGTAATCTAAAGTAAACTCACTTCGAATT-ATATATCTTGGGA  1145

seq1  GGAAAGAAAGCACATTCCAAG-AACAAAT  1176
      || |||||  |||||| |||| |||||||
seq2  GGTAAGAAGCCACATTTCAAGAAACAAAT  1174


seq1: chr18_8813247_8814342
seq2: B6Ng01-125M05.g_65_1135 (reverse)

seq1  GTAGCATCTGATATACTAGGGAAAGAAAATTCTTTGTGCCCCTTCAATAA  50
      |||||||||||| |||||||  ||||||||   ||||||| | |     |
seq2  GTAGCATCTGAT-TACTAGG--AAGAAAAT--CTTGTGCCTCAT-----A  40

seq1  AGTCACTGTCTCTTATCAGAGCCTAGGGGAGTCACTGTCACTTGACCTTG  100
      ||||||| |||| |||||||||||| ||||||||| ||||| ||| ||||
seq2  AGTCACTTTCTC-TATCAGAGCCTA-GGGAGTCAC-GTCAC-TGA-CTTG  85

seq1  AGGCAAGGTCACAAGACAGCAAGTCTACCTTGATCTTAGCTGGCTAAGAG  150
      | |||| |||||||||||||||||||| ||||||||||||| ||||||||
seq2  A-GCAA-GTCACAAGACAGCAAGTCTA-CTTGATCTTAGCT-GCTAAGAG  131

seq1  CCTGGCTTGAGTACACCTTTGACTTTCCTAAGTGAAAGCACCTAAAATCA  200
      ||||||||||||||||| ||||| |||||||||| |||||||||||||||
seq2  CCTGGCTTGAGTACACC-TTGAC-TTCCTAAGTG-AAGCACCTAAAATCA  178

seq1  GTAACTGCTCACTCCAAACCCTTAAGAGATTTTCTTTTTTTTTTTTTTTA  250
      || ||||||||||||||||||||||||||||   | ||||||||||||||
seq2  GT-ACTGCTCACTCCAAACCCTTAAGAGATT---TCTTTTTTTTTTTTTA  224

seq1  GACAGAGTCATGTGTATCACAAACTGAACTTGAACTCATTATATAGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTCATGTGTATCACAAACTGAACTTGAACTCATTATATAGCTGA  274

seq1  AAGTGACC-TTCAACTCCTCATCCTCTTGCTTCTGCCTCCCAAGTGCTGT  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCTTTCAACTCCTCATCCTCTTGCTTCTGCCTCCCAAGTGCTGT  324

seq1  GACTGCAGATGTTCACCACCACCATGGTAAGTTTGTGTTTGGTATAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGATGTTCACCACCACCATGGTAAGTTTGTGTTTGGTATAAAAC  374

seq1  TTAGGGTTGCATGTACAGAGCAATCTACAAACTGAGGTCAGTCCCAGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTGCATGTACAGAGCAATCTACAAACTGAGGTCAGTCCCAGGAT  424

seq1  TTTCTTAAGCTGGCTGATGTTTTAGTGGGGAACCATCGGGAAGAGACATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGCTGGCTGATGTTTTAGTGGGGAACCATCGGGAAGAGACATA  474

seq1  TTTCTACTTCTCCATGATTAGACCAGTTTCATTCAGATTCCCAGGACCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTTCTCCATGATTAGACCAGTTTCATTCAGATTCCCAGGACCTC  524

seq1  ATGACCTGAAGACCTGTGGTTACTAAGGGCACCTTTTTAAAGCTAAGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGAAGACCTGTGGTTACTAAGGGCACCTTTTTAAAGCTAAGACA  574

seq1  TGAGAGTAAGTGTGGAAATGAGTGGAGATTAAAGAATCTTAAAAAATCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTAAGTGTGGAAATGAGTGGAGATTAAAGAATCTTAAAAAATCAC  624

seq1  AGACTTGATCATATCAATTTTAGAATGGTTAGATTTCATATATATATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGATCATATCAATTTTAGAATGGTTAGATTTCATATATATATATA  674

seq1  TATATATATATATATATATATATATGTCTATTTCATTTATTTATATAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATGTCTATTTCATTTATTTATATAAAG  724

seq1  TGCTTTGTATGAATTTTGTAAGAGGAATCATTAATCATTGTTGGTGGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTATGAATTTTGTAAGAGGAATCATTAATCATTGTTGGTGGGAG  774

seq1  CATAAGCTAGCTCAGCCACTCTGGAAATAAATGTGGAGATTTTTTTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTAGCTCAGCCACTCTGGAAATAAATGTGGAGATTTTTTTCAAA  824

seq1  AAAGTTAGAAATATGACTTAGCCATATCACTCCTGGGGAAAGGTGCAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGAAATATGACTTAGCCATATCACTCCTGGGGAAAGGTGCAAAG  874

seq1  GACTATATATACTCCACTCTGCACGCCTATGTTTATCTCTTCTGCATGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATATACTCCACTCTGCACGCCTATGTTTATCTCTTCTGCATGAA  924

seq1  TTACTTTTTGTAACTGTGACTAAAATCAACTTAGGGAAGAAAGAGTATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTGTAACTGTGACTAAAATCAACTTAGGGAAGAAAGAGTATAT  974

seq1  TTTGACTCATGTTTCCAGAGTAAGAGTTCATAAGTGGTGGATAGCCATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCATGTTTCCAGAGTAAGAGTTCATAAGTGGTGGATAGCCATTG  1024

seq1  CAACTGGTGTCTGCAGCAAGAAGCTCTGAGAACTACTGAAAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTGTCTGCAGCAAGAAGCTCTGAGAACTACTGAAAGAATTC  1071


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