BAC Information

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BAC

Clone NameB6Ng01-126M02
Chromosome18 (Build37)
Map Location 45,553,872 - 45,554,093
singlet/doubletsinglet
Overlap genenone
Upstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M02.bB6Ng01-126M02.g
ACCDH929042DH929043
length1,230610
definitionDH929042|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M02, 5' end.DH929043|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgtttacctatctgatt
taggataggtaaagatcctttcccaatctgttggtggtctttttgtctta
ttgacggtgtcttttgccttgcagaaactttggagttgcattaggtccca
tttgtcaattctcgatcttacagcacaagccattgctgttctattcagga
atttttcccctgtgcccatatcttcaaggcttttccacactttctcctct
ataagtttcagtgtctctggttttatgtgaagttccttgatccacttaga
tttgaccttagtacaaggagataagtatggatcgattcgcattcttctac
acgataacaaccagttgtgccagcaccaattgttgaaaatgctgtctttc
ttccactggatggttttagctctcttgtcgaagatcaagtgaccataggt
gtgtgggttcatttctgggtcttcaattctattccattggtctacttgtc
tgtctctataccagtaccatgcagtttttatcacaattgctctgtagtaa
agctttaggtctggcataatgattccaccagaagttcttttatccttgag
aagactttttgctatcctaggttttttgttattccagacaaatttgcaaa
ttgctccttccaattcgttgaagaattgagttggaattttgatggggatt
gcattgaatctgtagattgcttttggcaagatagccatttttacaatgtt
gatcctgccaatccatgatcatgggagatctttccaacttctgagatctt
ctttatttctttcttcagagatttgaagttttatcatacagatctttcac
tttcttagttagagtcacgccaggtattttatattatttgtgactattga
gaaggtgttgttccctaattcttctcagcctgtttattctttgtatagag
aaggccattgactgtttgagtttattttatatccagctacttcactgaag
ctgttatcaggttaggagttctcttggtagagttttagggtcactataat
accatcaaattcatctgccaaagtgtatttggactcccttccaattgaat
ctcctggattcttgtgactaaatgcctggcatactcagaaatagatgata
acaggcgagtcagtgaaaagtggggacact
gaattctgcactaaacccctctggtcctaggctttttttggttggcagac
tttcaatgactgcttctattcctttaggagtcatgggagaatttatacag
tttgtctaatcctgatttaactttggtatttggtatctgtctggaattgt
ccatttcatccagattttccagttttgttaaatatagacttttgtagtag
gatgagatgatttttttgaaatttctgtttctgttgttgtctcccttttc
atttctgattttgttaacttggatactgtctctgtgccctctgattaatc
tggctatcttgttgattttcttaaagaaccagcttctggttttgttgatt
tttgttgttgttgttgttgtttttgtggtttttcaagacagggtctctct
gtatagccctggctgtcctggaactcactttgtagatcaggctggccttg
aactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggca
tgcgccaccacgcccggctgattctttgtatagttctttttgtgtctact
tggttgatttcagccctgagtttgattgtttcctgctttctactcctctt
gggtgtattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45553872_45554093
seq2: B6Ng01-126M02.g_300_680 (reverse)

seq1  AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTG  50
      |||| |||||||||||||||||  |||||||| |||||||||||||| ||
seq2  AAATACACCCAAGAGGAGTAGAAAGCAGGAAACAATCAAACTCAGGGCTG  50

seq1  AAATCAACCAAGTAGAAACAAGAAGAACTATTCAAAGAATTAACC-----  95
      |||||||||||||||| |||| ||||||||| |||||||| | ||     
seq2  AAATCAACCAAGTAGACACAAAAAGAACTATACAAAGAATCAGCCGGGCG  100

seq1  ----------------AAAT------------------GAGG--------  103
                       |||                  ||||        
seq2  TGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGA  150

seq1  -------------------------------AGTTGGTTC----------  112
                                     |||  ||||          
seq2  TTTCTGAGTTCAAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCC  200

seq1  -----------------------TTTGAGAAA----------------AT  123
                              |||| |||                | 
seq2  AGGGCTATACAGAGAGACCCTGTCTTGAAAAACCACAAAAACAACAACAA  250

seq1  CAACAAGATAGAT-----AAACC-----------CT--------------  143
      |||||| | | ||     |||||           ||              
seq2  CAACAACAAAAATCAACAAAACCAGAAGCTGGTTCTTTAAGAAAATCAAC  300

seq1  ----TAGCTAGACTCACTAGAGGGCACAGAGACAAAATCCTAATTAACAA  189
          |||| ||| | |  ||||||||||||||||  |||| | |||||||
seq2  AAGATAGCCAGATTAATCAGAGGGCACAGAGACAGTATCCAAGTTAACAA  350

seq1  AATCAGAACTGAAAAGGGAGACATAACAACAGA  222
      |||||||| |||||||||||||  |||||||||
seq2  AATCAGAAATGAAAAGGGAGAC--AACAACAGA  381