BAC Information

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BAC

Clone NameB6Ng01-127I17
Chromosome18 (Build37)
Map Location 56,447,040 - 56,579,477
singlet/doubletdoublet
Overlap geneLOC676543, LOC667432
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104
Downstream geneGramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127I17.bB6Ng01-127I17.g
ACCDH929633DH929634
length1,034973
definitionDH929633|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I17, 5' end.DH929634|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,578,447 - 56,579,477)(56,447,040 - 56,448,021)
sequence
gaattcatttcttagagccttggctatctaatgactgcgaagtgtccacg
tgatatgctctgccacgaggaaatcatagcacaagccagaaatcacagtg
agaccagctagggagcttttagtttctccttttccatttgtgtcattttg
tctatttttaaggggttggtagtgaacttggcttaagaagtaggtgagaa
gctcttagatcagttctgaaaatgttcttatagttttgactgtgagcctt
gccactcatggctgagccctctctcttgctcctgaaaaatgttctacaca
ttgatcttggtggtaagttacctgcttatctagattgaacaaattcatgg
aatgtttcaatatatcgaagttcagtctcagttttagcataatttaaagt
cccaactgtcttcagtcaagtttgttttttttaaagtgtgtatagttaat
caagtaacaacagatgaactaaaacaacttgtactaaatgtttcctacct
ttctgtctctattctgaggatctcaatgtctcactatctctgctttactg
aacatttgatggtaaaattcagtgctgacaaaggagttcttggttgggat
tctctccatcgccttttctccattcttcttttagtgcattgtattgtaaa
aggcatggctcgttgccatggaaacctagagaacctctgctaaaaaaaac
atttctaggtcacaaaagtcctggcttattaatagtgtggatctttactt
tttgattgagcaagtatttcaaagattagttggagggggcggaaccaaag
gggcccaagaactgcaagtaggatgcgtgacacacaacatctgtatgcag
actagaaccttaggttctttattttacttcgtttctatcccgaaagttct
ttaaggatgctcagcagctgtgacctggtttactagatgttgggtagttt
gggagacagagatttacacaattccaagtaaaggaatgaggtagtgagag
tgaaattagcagagtgcttctgaaaggtctggca
gaattcaacagccttgatctcagcacacttaaaaaaccagacaaagattc
ctaccatgatttccctggcaaattattagcaaattgtcagtgatagcctc
tcacccttgagctgtgccttcataaacaagtgtagatgttaccagtcatc
acccagcccgctgctccgtaatgtcatttacatatatttacacatatgca
tatcatctgtactgtacttgcactgaagattattgaagttcagttacatt
aaaaggaatgcagggagagaggggaaaaaatctagccaatcttttcagga
tgccaaggaagcattgcagatgctgtgggttctctgactccctggtgtga
gactgttttaaattgcctcgctgcccataaaataccttaagcccccagca
ttttagttttcactactgaggacttgatggtaactccaaggaaaaggtca
gtgtaagactctatttcaatagactgcaggcagcagcaggctctgcggag
ttcacaaagagctcaggagagtttacaggattcggtgacctaaacatgcc
agtgttactggtgccatttcctttgcatcccagtttggcagcgaggacaa
atgtgtgataattagaaagctctcctgaaatgcttctctttgatttgtta
ttgggttgtagctacagttcctcccgcagccttgcatctctcaggtctgt
ctgctgggtaccatgggtgatggggctcaatgtatcctatgagctaaatc
agcattctgccacatccaggctgctggcaacggaacttctgagaattggg
caggttttgaggttgaatgtaaaagcaattgcttgaaaaaatgatcatac
atttgaaggggggtgggaacagtccacagaaaagaatcacagttccttgt
cattcaggtatggaataatatctgatcctccaaggctacccaaagctcat
gggagggagagaattgcatatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56578447_56579477
seq2: B6Ng01-127I17.b_44_1077 (reverse)

seq1  TGCCTGACCTATCAGAAGCACTCTGCTAATTTCACTCTCACTACCTCATT  50
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACCTTTCAGAAGCACTCTGCTAATTTCACTCTCACTACCTCATT  50

seq1  TCCTTTTACTT-GAATTGTGTAAAATCTCTGTCT-CCAAACTACCC-ACA  97
        | ||||||| ||||||||| |||||||||||| ||||||||||| |||
seq2  --CCTTTACTTGGAATTGTGT-AAATCTCTGTCTCCCAAACTACCCAACA  97

seq1  TCTAGTAAACCAGGTCACAGCTGCTGAGCATCCTTAAAAGAACTTTCGGG  147
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTAGTAAACCAGGTCACAGCTGCTGAGCATCCTT-AAAGAACTTTCGGG  146

seq1  ATAGAAACGAAGTAAAATAAAGAACCTAAGGTTCTAGTCTGCATACAGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACGAAGTAAAATAAAGAACCTAAGGTTCTAGTCTGCATACAGAT  196

seq1  GTTGTGTGTCACGCATCCTACTTGCAGTTCTTGGG-CCCTTTGGTTCCGC  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTGTGTGTCACGCATCCTACTTGCAGTTCTTGGGCCCCTTTGGTTCCGC  246

seq1  CCC--TCAACTAATCTTTGAAATACTTGCTCAATCAAAAAGTAAAGATCC  294
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCAACTAATCTTTGAAATACTTGCTCAATCAAAAAGTAAAGATCC  296

seq1  ACACTATTAATAAGCCAGGACTTTTGTGACCTAG-AATGTTTTTTTTAGC  343
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACACTATTAATAAGCCAGGACTTTTGTGACCTAGAAATGTTTTTTTTAGC  346

seq1  AGAGGTTCTCTAGGTTTCCATGGCAACGAGCCATGCCTTTTACAATACAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTCTAGGTTTCCATGGCAACGAGCCATGCCTTTTACAATACAA  396

seq1  TGCACTAAAAGAAGAATGGAGAAAAGGCGATGGAGAGAATCCCAACCAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAAAAGAAGAATGGAGAAAAGGCGATGGAGAGAATCCCAACCAAG  446

seq1  AACTCCTTTGTCAGCACTGAATTTTACCATCAAATGTTCAGTAAAGCAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTTGTCAGCACTGAATTTTACCATCAAATGTTCAGTAAAGCAGA  496

seq1  GATAGTGAGACATTGAGATCCTCAGAATAGAGACAGAAAGGTAGGAAACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGAGACATTGAGATCCTCAGAATAGAGACAGAAAGGTAGGAAACA  546

seq1  TTTAGTACAAGTTGTTTTAGTTCATCTGTTGTTACTTGATTAACTATACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACAAGTTGTTTTAGTTCATCTGTTGTTACTTGATTAACTATACA  596

seq1  CACTTTAAAAAAAACAAACTTGACTGAAGACAGTTGGGACTTTAAATTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAAAAAAACAAACTTGACTGAAGACAGTTGGGACTTTAAATTAT  646

seq1  GCTAAAACTGAGACTGAACTTCGATATATTGAAACATTCCATGAATTTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACTGAGACTGAACTTCGATATATTGAAACATTCCATGAATTTGT  696

seq1  TCAATCTAGATAAGCAGGTAACTTACCACCAAGATCAATGTGTAGAACAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAGATAAGCAGGTAACTTACCACCAAGATCAATGTGTAGAACAT  746

seq1  TTTTCAGGAGCAAGAGAGAGGGCTCAGCCATGAGTGGCAAGGCTCACAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGAGCAAGAGAGAGGGCTCAGCCATGAGTGGCAAGGCTCACAGT  796

seq1  CAAAACTATAAGAACATTTTCAGAACTGATCTAAGAGCTTCTCACCTACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTATAAGAACATTTTCAGAACTGATCTAAGAGCTTCTCACCTACT  846

seq1  TCTTAAGCCAAGTTCACTACCAACCCCTTAAAAATAGACAAAATGACACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCAAGTTCACTACCAACCCCTTAAAAATAGACAAAATGACACA  896

seq1  AATGGAAAAGGAGAAACTAAAAGCTCCCTAGCTGGTCTCACTGTGATTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAGGAGAAACTAAAAGCTCCCTAGCTGGTCTCACTGTGATTTC  946

seq1  TGGCTTGTGCTATGATTTCCTCGTGGCAGAGCATATCACGTGGACACTTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGCTATGATTTCCTCGTGGCAGAGCATATCACGTGGACACTTC  996

seq1  GCAGTCATTAGATAGCCAAGGCTCTAAGAAATGAATTC  1031
      ||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATTAGATAGCCAAGGCTCTAAGAAATGAATTC  1034

seq1: chr18_56447040_56448021
seq2: B6Ng01-127I17.g_67_1039

seq1  GAATTCAACAGCCTTGATCTCAGCACACTTAAAAAACCAGACAAAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGCCTTGATCTCAGCACACTTAAAAAACCAGACAAAGATTC  50

seq1  CTACCATGATTTCCCTGGCAAATTATTAGCAAATTGTCAGTGATAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGATTTCCCTGGCAAATTATTAGCAAATTGTCAGTGATAGCCTC  100

seq1  TCACCCTTGAGCTGTGCCTTCATAAACAAGTGTAGATGTTACCAGTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGAGCTGTGCCTTCATAAACAAGTGTAGATGTTACCAGTCATC  150

seq1  ACCCAGCCCGCTGCTCCGTAATGTCATTTACATATATTTACACATATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCGCTGCTCCGTAATGTCATTTACATATATTTACACATATGCA  200

seq1  TATCATCTGTACTGTACTTGCACTGAAGATTATTGAAGTTCAGTTACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGTACTGTACTTGCACTGAAGATTATTGAAGTTCAGTTACATT  250

seq1  AAAAGGAATGCAGGGAGAGAGGGGAAAAAATCTAGCCAATCTTTTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATGCAGGGAGAGAGGGGAAAAAATCTAGCCAATCTTTTCAGGA  300

seq1  TGCCAAGGAAGCATTGCAGATGCTGTGGGTTCTCTGACTCCCTGGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGAAGCATTGCAGATGCTGTGGGTTCTCTGACTCCCTGGTGTGA  350

seq1  GACTGTTTTAAATTGCCTCGCTGCCCATAAAATACCTTAAGCCCCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTAAATTGCCTCGCTGCCCATAAAATACCTTAAGCCCCCAGCA  400

seq1  TTTTAGTTTTCACTACTGAGGACTTGATGGTAACTCCAAGGAAAAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTTCACTACTGAGGACTTGATGGTAACTCCAAGGAAAAGGTCA  450

seq1  GTGTAAGACTCTATTTCAATAGACTGCAGGCAGCAGCAGGCTCTGCGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGACTCTATTTCAATAGACTGCAGGCAGCAGCAGGCTCTGCGGAG  500

seq1  TTCACAAAGAGCTCAGGAGAGTTTACAGGATTCGGTGACCTAAACATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGAGCTCAGGAGAGTTTACAGGATTCGGTGACCTAAACATGCC  550

seq1  AGTGTTACTGGTGCCATTTCCTTTGCATCCCAGTTTGGCAGCGAGGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACTGGTGCCATTTCCTTTGCATCCCAGTTTGGCAGCGAGGACAA  600

seq1  ATGTGTGATAATTAGAAAGCTCTCCTGAAATGCTTCTCTTTGATTTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGATAATTAGAAAGCTCTCCTGAAATGCTTCTCTTTGATTTGTTA  650

seq1  TTGGGTTGTAGCTACAGTTCCTCCCGCAGCCTTGCATCTCTCAGGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGTAGCTACAGTTCCTCCCGCAGCCTTGCATCTCTCAGGTCTGT  700

seq1  CTGCTGGTTACCAT-GGTGATGGGGCTCAATGTATCCTATGAGCTAAATC  749
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGTACCATGGGTGATGGGGCTCAATGTATCCTATGAGCTAAATC  750

seq1  AGCATTCTGCCACATCCAGGCTGCTGGCAACGGAACTTCTGAGAATTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGCCACATCCAGGCTGCTGGCAACGGAACTTCTGAGAATTGGG  800

seq1  CAAGTGTTGAGGTTGAATGTAAAAGCAATTGCTTGAAAAATATGATCATA  849
      || || |||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGTTTTGAGGTTGAATGTAAAAGCAATTGCTTGAAAAA-ATGATCATA  849

seq1  CATTTGAAGGGGGTGGGAAACAGTCCACAGAAAAAGATCACAGTTTCTTT  899
      |||||||||||||  || ||||||||||||||||  ||||||| ||| ||
seq2  CATTTGAAGGGGGGTGGGAACAGTCCACAGAAAAGAATCACAG-TTCCTT  898

seq1  GTCATCAAGGTATGGAATAAATATCTGATCTCCCATAGGGCTAACCACAA  949
      |||||  ||||||||||| |||||||||||  ||  | ||||| ||   |
seq2  GTCATTCAGGTATGGAAT-AATATCTGATCCTCC--AAGGCTACCC---A  942

seq1  AAGCTCGAGGCAGGGAGAGAATTGGCAATATGA  982
      ||||||  || |||||||||||||   ||||||
seq2  AAGCTCATGGGAGGGAGAGAATTG--CATATGA  973