BAC Information

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BAC

Clone NameB6Ng01-132I06
Chromosome18 (Build37)
Map Location 77,111,605 - 77,236,539
singlet/doubletdoublet
Overlap geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2
Upstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
Downstream genePias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132I06.bB6Ng01-132I06.g
ACCDH933298DH933299
length9511,120
definitionDH933298|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I06, 5' end.DH933299|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,235,588 - 77,236,539)(77,111,605 - 77,112,736)
sequence
gaattctaaactcttaatctgggagcatttgaggacgaatgtttaggtgt
atgatgagggctaacttaagaatataaatttgaacctgcccctgctttcc
ccccgttcaggtgctgtttgaacttgcgcgatatcatgccccctccacga
tcttcctggatgagctggagtcggtgatgagtcagagaggcatggttcct
gggtaacagacagggttgtgttgtgttgtgttgtgttgtgtcatcatttc
tcccctctttgtaagtgtgtgtgatggttggaagcctttcaacatttacc
agcagaatgagcctattaataagcccacagattttctgcagggacacaga
aaggtctttctttagattagatcctgttaactgagtagctgacttatagt
ttttatagccggaagagatttcatcctctcttccccctccccacagagtg
gctttcaggcctgaagatcttgcagccgcagccgcaagatcccaggctgc
catgatgggctggctggctcaaaataacctcccctggagccagagggctg
cctgtgtggacccagactttcccatgaagcctcagggcgggctccttctg
catttcattctctggaggcgctcttcgaggccaaggaaactggcgattct
ttgacattatttctaaagataaagtgtcagaaaatgtccccagcaggaag
gagaacctctctattataaatgcttttgggtcatgctttcaaaaggccaa
gtagggttgtttgcttgcctgcttgcttggttttgtgagtgtatgtggca
tgtattatgtgtgtgcatatgtgtgcgctagagtatgtaacatgtttgtg
tgtgtatgtatgcatgtgcatgggtgcacaagcatgcgtgcatgtgtaaa
tgagcatgtgtgtgcatgtcagtgtgtgtgtgatgtatgtatatgtgtat
a
gaattcactgaccggttctttgtgtgttcgtgagatttagtccctccttg
tttgatgttcactacttgtgtatgccgtagcatgggacatgctcacaacc
catccctcttgtctgttttctgatggctgagcatgggcagaaccaagggt
gcgacggaacatctagaacttgaggccaccagggccgggggacccagaga
gcatgggaaagcaaagccatgtccccaggccttggcttttggttgcatct
ggtgttcacagatcatgaaggttccatgagaaggtggtgcattcctaaac
atcagctttgcgtcttatcccccttcccctgcccccatgcacttacactc
aggttattcatttctttcccactccaaaccacttctgttttcttttacct
tctgacggacgtgtttgaggccaggcctctaagaaagacattcctcccgt
gcatactgttttctgcctctaagcaactgagatctctaaatttcccccac
cctctctgcttgtaaatattttttttaaaaaagaagaacataagggaaag
aaggtgagcactttaatttggggatgcctccaaagctgttcattttaaga
agtgaaacgcatctaacggacggaacattagtcaacctgacggaatacta
gtcaaaattggaagctcattgtcaactaaatcacatttatttcatctagt
attagactgcctcttaaaaaaaaaaacagatggaaaacattagcagtaat
agtgaacaaacatccaggctcccagaggtcatttttaactaccattaaca
atctggatcccacagattagcaagaatgcagaaagtggcagtccagtaag
agacacacagagcacagctgagactgcttctgtgaccttatttacctgac
acttagactgaaagaaaattcctcagtgaaatggaacgttcatatctcta
agttctacattgcctatttttgctcagaaatcacagcaaacgtcttattg
taatagaaccctatgcaagatgttaataaacctcaggctggtgaaagagc
agcccattgttacgtcaccagtagattttcttgcagtcggtctgtttcaa
tttacagctatgtttagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_77235588_77236539
seq2: B6Ng01-132I06.b_47_997 (reverse)

seq1  TATACACATATACATACATACACACACACACTGACATGCACACACATGCT  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATACACATATACATACAT-CACACACACACTGACATGCACACACATGCT  49

seq1  CATTTACACATGCACGCATGCTTGTGCACCCATGCACATGCATACATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACACATGCACGCATGCTTGTGCACCCATGCACATGCATACATACA  99

seq1  CACACAAACATGTTACATACTCTAGCGCACACATATGCACACACATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACATGTTACATACTCTAGCGCACACATATGCACACACATAATA  149

seq1  CATGCCACATACACTCACAAAACCAAGCAAGCAGGCAAGCAAACAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACATACACTCACAAAACCAAGCAAGCAGGCAAGCAAACAACCCT  199

seq1  ACTTGGCCTTTTGAAAGCATGACCCAAAAGCATTTATAATAGAGAGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCTTTTGAAAGCATGACCCAAAAGCATTTATAATAGAGAGGTTC  249

seq1  TCCTTCCTGCTGGGGACATTTTCTGACACTTTATCTTTAGAAATAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGCTGGGGACATTTTCTGACACTTTATCTTTAGAAATAATGTC  299

seq1  AAAGAATCGCCAGTTTCCTTGGCCTCGAAGAGCGCCTCCAGAGAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCGCCAGTTTCCTTGGCCTCGAAGAGCGCCTCCAGAGAATGAAA  349

seq1  TGCAGAAGGAGCCCGCCCTGAGGCTTCATGGGAAAGTCTGGGTCCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGGAGCCCGCCCTGAGGCTTCATGGGAAAGTCTGGGTCCACACA  399

seq1  GGCAGCCCTCTGGCTCCAGGGGAGGTTATTTTGAGCCAGCCAGCCCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCTCTGGCTCCAGGGGAGGTTATTTTGAGCCAGCCAGCCCATCA  449

seq1  TGGCAGCCTGGGATCTTGCGGCTGCGGCTGCAAGATCTTCAGGCCTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTGGGATCTTGCGGCTGCGGCTGCAAGATCTTCAGGCCTGAAA  499

seq1  GCCACTCTGTGGGGAGGGGGAAGAGAGGATGAAATCTCTTCCGGCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTGTGGGGAGGGGGAAGAGAGGATGAAATCTCTTCCGGCTATAA  549

seq1  AAACTATAAGTCAGCTACTCAGTTAACAGGATCTAATCTAAAGAAAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAAGTCAGCTACTCAGTTAACAGGATCTAATCTAAAGAAAGACC  599

seq1  TTTCTGTGTCCCTGCAGAAAATCTGTGGGCTTATTAATAGGCTCATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTCCCTGCAGAAAATCTGTGGGCTTATTAATAGGCTCATTCTG  649

seq1  CTGGTAAATGTTGAAAGGCTTCCAACCATCACACACACTTACAAAGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAATGTTGAAAGGCTTCCAACCATCACACACACTTACAAAGAGGG  699

seq1  GAGAAATGATGACACAACACAACACAACACAACACAACCCTGTCTGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGATGACACAACACAACACAACACAACACAACCCTGTCTGTTAC  749

seq1  CCAGGAACCATGCCTCTCTGACTCATCACCGACTCCAGCTCATCCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACCATGCCTCTCTGACTCATCACCGACTCCAGCTCATCCAGGAA  799

seq1  GATCGTGGAGGGGGCATGATATCGCGCAAGTTCAAACAGCACCTGAACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTGGAGGGGGCATGATATCGCGCAAGTTCAAACAGCACCTGAACGG  849

seq1  GGGGAAAGCAGGGGCAGGTTCAAATTTATATTCTTAAGTTAGCCCTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGCAGGGGCAGGTTCAAATTTATATTCTTAAGTTAGCCCTCATC  899

seq1  ATACACCTAAACATTCGTCCTCAAATGCTCCCAGATTAAGAGTTTAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTAAACATTCGTCCTCAAATGCTCCCAGATTAAGAGTTTAGAAT  949

seq1  TC  952
      ||
seq2  TC  951

seq1: chr18_77111605_77112736
seq2: B6Ng01-132I06.g_66_1185

seq1  GAATTCACTGACCGGTTCTTTGTGTGTTCGTGAGATTTAGTCCCTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCGGTTCTTTGTGTGTTCGTGAGATTTAGTCCCTCCTTG  50

seq1  TTTGATGTTCACTACTTGTGTATGCCGTAGCATGGGACATGCTCACAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTCACTACTTGTGTATGCCGTAGCATGGGACATGCTCACAACC  100

seq1  CATCCCTCTTGTCTGTTTTCTGATGGCTGAGCATGGGCAGAACCAAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTTGTCTGTTTTCTGATGGCTGAGCATGGGCAGAACCAAGGGT  150

seq1  GCGACGGAACATCTAGAACTTGAGGCCACCAGGGCCGGGGGACCCAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACGGAACATCTAGAACTTGAGGCCACCAGGGCCGGGGGACCCAGAGA  200

seq1  GCATGGGAAAGCAAAGCCATGTCCCCAGGCCTTGGCTTTTGGTTGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAAAGCAAAGCCATGTCCCCAGGCCTTGGCTTTTGGTTGCATCT  250

seq1  GGTGTTCACAGATCATGAAGGTTCCATGAGAAGGTGGTGCATTCCTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCACAGATCATGAAGGTTCCATGAGAAGGTGGTGCATTCCTAAAC  300

seq1  ATCAGCTTTGCGTCTTATCCCCCTTCCCCTGCCCCCATGCACTTACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTTGCGTCTTATCCCCCTTCCCCTGCCCCCATGCACTTACACTC  350

seq1  AGGTTATTCATTTCTTTCCCACTCCAAACCACTTCTGTTTTCTTTTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTCATTTCTTTCCCACTCCAAACCACTTCTGTTTTCTTTTACCT  400

seq1  TCTGACGGACGTGTTTGAGGCCAGGCCTCTAAGAAAGACATTCCTCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGGACGTGTTTGAGGCCAGGCCTCTAAGAAAGACATTCCTCCCGT  450

seq1  GCATACTGTTTTCTGCCTCTAAGCAACTGAGATCTCTAAATTTCCCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTGTTTTCTGCCTCTAAGCAACTGAGATCTCTAAATTTCCCCCAC  500

seq1  CCTCTCTGCTTGTAAATATTTTTTTTAAAAAAGAAGAACATAAGGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCTTGTAAATATTTTTTTTAAAAAAGAAGAACATAAGGGAAAG  550

seq1  AAGGTGAGCACTTTAATTTGGGGATGCCTCCAAAGCTGTTCATTTTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGCACTTTAATTTGGGGATGCCTCCAAAGCTGTTCATTTTAAGA  600

seq1  AGTGAAACGCATCTAACGGACGGAACATTAGTCAACCTGACGGAATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACGCATCTAACGGACGGAACATTAGTCAACCTGACGGAATACTA  650

seq1  GTCAAAATTGGAAGCTCATTGTCAACTAAATCACATTTATTTCATCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTGGAAGCTCATTGTCAACTAAATCACATTTATTTCATCTAGT  700

seq1  ATTAGACTGCCTCTTAAAAAAAAAAACAGATGGAAAACATTAGCAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTGCCTCTTAAAAAAAAAAACAGATGGAAAACATTAGCAGTAAT  750

seq1  AGTGAACAAACATCCAGGCTCCCAGAGGTCATTTTTAACTACCATTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAAACATCCAGGCTCCCAGAGGTCATTTTTAACTACCATTAACA  800

seq1  ATCTGGATCCCACAGATTAGCAAGAATGCAGAAAGTGGCAGTCCAGTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATCCCACAGATTAGCAAGAATGCAGAAAGTGGCAGTCCAGTAAG  850

seq1  AGACACACAGAGCACAGCTGAGACTGCTTCTGTGACCTTATTTACCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAGAGCACAGCTGAGACTGCTTCTGTGACCTTATTTACCTGAC  900

seq1  ACTTAGACTGAAAGAAAAATTCCTCAGTGAGAAGGGAACGTTCATATCTT  950
      |||||||||||||| ||||||||||||||| || |||||||||||||| |
seq2  ACTTAGACTGAAAG-AAAATTCCTCAGTGA-AATGGAACGTTCATATC-T  947

seq1  CTAAGTTCTACATTGCCTATTTTTGCTCAGAAATCACAGCAAAACGTCTT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAGTTCTACATTGCCTATTTTTGCTCAGAAATCACAGC-AAACGTCTT  996

seq1  ATTTGTAATAG-ACACTATGCAAGATGTTAATAAAACCTCCAGGGCTGGT  1049
      | ||||||||| || ||||||||||||||||| |||||||   |||||||
seq2  A-TTGTAATAGAACCCTATGCAAGATGTTAAT-AAACCTC--AGGCTGGT  1042

seq1  GAAAAGAGCAGCCCATTGTTAACGTCACCAGTAGATTTTCCTGCAGTCGG  1099
      | |||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  G-AAAGAGCAGCCCATTGTT-ACGTCACCAGTAGATTTTCTTGCAGTCGG  1090

seq1  TCTGTTTCCATTTACCAGCTATTGTTTTAGGGG  1132
      |||||||| ||||| |||||||   ||||||||
seq2  TCTGTTTCAATTTA-CAGCTAT--GTTTAGGGG  1120