BAC Information

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BAC

Clone NameB6Ng01-133M16
Chromosome18 (Build37)
Map Location 29,228,575 - 29,229,759
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M16.bB6Ng01-133M16.g
ACCDH934250DH934251
length1,2621,161
definitionDH934250|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M16, 5' end.DH934251|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctggatccctgagcgggagggagccaaaggatatctccagttta
gatactatttcctcataatgtctgtttgtaggtctgtacatctgctgcca
gataaagcctctctgatgatgacaagacatggcagaatatcattagaaat
aattttggttgtgttttattttcacagcagttgcgtttggttctatccta
gatccctaggctatccagtttccagttactggtcatctaggcactgttgg
gtctcaacttcctgtcatggagtgatcctcaacttaaaccagatactagt
tagccactcacccaaattccatgccattactgccccagaatatcttgtag
gcagaaaaatttgtgcatcaaaacttttgtggttggttttgtgtccatgt
ttctttttcagctccctgccttctagcatcaaggagactagaaaaagaac
agagaggagacagctctaagaaggcagcaactcagactctctacaatcaa
tgagctctgtgaatattgtcctcagtaatgtggtccagctgtcagttcgc
tatctcctcgcatcagactgcattacttgagaatctccacgggactccct
cagtcaacaactgtagcaaatgcaacccagtcccaccactgagaacctcg
cacagccttattagatggctaattcagactgtgtatacaacccgttgcta
gatgtcctcactaggatcgccaccatagataccaggaagtttccactgta
ctagattttcattccatagcccaagtgttccccctgttctattggtctct
ccatgcactctgctcctcaatcccatcttttcctccaaccttattccaga
catgcctgtccttacctagcccctgtcaacctcacacaggatgattattt
ttcagttcattcattttcctgcaaacttcatgaggtcatattttaagaac
ggagtaatatacaatcgaattaatgcatcacattttctttatccattctt
cagatgggaaatatttagtttgttttcagtttctgctgtatagagtaaag
ccacaatgacatagctgtgtaagtgtccttgtagagatggagtttccttt
gtgtatctgctcagagtgaatagctgggtcttgaagttaattcatttgta
atttctaggacgagcaactgaatttctatctggcgtatgctgactcacca
tccataagaagagttctctttactctccatttctctccacatcgagacac
gttgctcaccag
gaattctacagttatgagggctatgttcatgttcaggatttcttagttca
cctgtacacacagtcaaatttactttccttccacagaaattttaaatata
ttcacaagcaagttatatgtcccatctttgctcatatagtattaatgtga
tatgatacatagaaattccacaatagtttatctaggcataatcggccttc
atgaacatcattgtacaattttaaatctttattatggttccgtatctaaa
cccattttctgaaaatttacatgatattcaaaatttaatagaacttgtga
taggacatgctctttctgtcatttatgtgacattttttaaatagaaaaga
taaaatattataatttaggttactttaggtcattgtcaatattgtgagag
tctgatagaaaagcttgcctgctctttttcactctttctcttgtccttca
actaaaattgtcccttcattcattttgctctggccttgacaggcagctga
ttttaaagtgtgagacaattatttgtttttttggatgttaccatttattg
gaagaaggataaaatcaatgtgacatttccagaacaatgagagatgacga
tagtagatggtctttaaatgggaaacactaaattttaaaaatgtcaccta
tatattatgtcagactttgtcaaagataaaacaataaaacttatagacat
aaaaactaatcatatttcaccatattacttgtagataaagatggtgttct
cattttgctgaatgtctgcctaaatgccgccttatcacaagctagaatga
ctggagctattattatggaagtcctgtgatttgagccattaacaaaatac
agatgtttgtgtgactgggtactgtgtaattgtgggctcactccaagttc
catctacagctatgtgtggttccagcaacaggcatgggaatataatgttg
catcactcttatatgtcatgtctccatgaacataggcaactatatcccag
tttctctgttcagtcttcaataaatgcatttgaatttagtcacgattaag
ggaaaagaaagactagtaacagaacagtctggtgcataataagtaatact
actgctgttaaatgaactgtttacgttagtggtcctaagcaatatacatg
caggttcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29228575_29229759
seq2: B6Ng01-133M16.g_68_1228

seq1  GAATTCTACAGTTATGAGGGCTATGTTCATGTTCAGGATTTCTTAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGTTATGAGGGCTATGTTCATGTTCAGGATTTCTTAGTTCA  50

seq1  CCTGTACACACAGTCAAATTTACTTTCCTTCCACAGAAATTTTAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACACACAGTCAAATTTACTTTCCTTCCACAGAAATTTTAAATATA  100

seq1  TTCACAAGCAAGTTATATGTCCCATCTTTGCTCATATAGTATTAATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGCAAGTTATATGTCCCATCTTTGCTCATATAGTATTAATGTGA  150

seq1  TATGATACATAGAAATTCCACAATAGTTTATCTAGGCATAATCGGCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACATAGAAATTCCACAATAGTTTATCTAGGCATAATCGGCCTTC  200

seq1  ATGAACATCATTGTACAATTTTAAATCTTTATTATGGTTCCGTATCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCATTGTACAATTTTAAATCTTTATTATGGTTCCGTATCTAAA  250

seq1  CCCATTTTCTGAAAATTTACATGATATTCAAAATTTAATAGAACTTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTGAAAATTTACATGATATTCAAAATTTAATAGAACTTGTGA  300

seq1  TAGGACATGCTCTTTCTGTCATTTATGTGACATTTTTTAAATAGAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATGCTCTTTCTGTCATTTATGTGACATTTTTTAAATAGAAAAGA  350

seq1  TAAAATATTATAATTTAGGTTACTTTAGGTCATTGTCAATATTGTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTATAATTTAGGTTACTTTAGGTCATTGTCAATATTGTGAGAG  400

seq1  TCTGATAGAAAAGCTTGCCTGCTCTTTTTCACTCTTTCTCTTGTCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGAAAAGCTTGCCTGCTCTTTTTCACTCTTTCTCTTGTCCTTCA  450

seq1  ACTAAAATTGTCCCTTCATTCATTTTGCTCTGGCCTTGACAGGCAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTGTCCCTTCATTCATTTTGCTCTGGCCTTGACAGGCAGCTGA  500

seq1  TTTTAAAGTGTGAGACAATTATTTGTTTTTTTGGATGTTACCATTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTGTGAGACAATTATTTGTTTTTTTGGATGTTACCATTTATTG  550

seq1  GAAGAAGGATAAAATCAATGTGACATTTCCAGAACAATGAGAGATGACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGATAAAATCAATGTGACATTTCCAGAACAATGAGAGATGACGA  600

seq1  TAGTAGATGGTCTTTAAATGGGAAACACTAAATTTTAAAAATGTCACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATGGTCTTTAAATGGGAAACACTAAATTTTAAAAATGTCACCTA  650

seq1  TATATTATGTCAGACTTTGTCAAAGATAAAACAATAAAACTTATAGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATGTCAGACTTTGTCAAAGATAAAACAATAAAACTTATAGACAT  700

seq1  AAAAACTAATCATATTTCACCATATTACTTGTAGATAAAGATGGTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAATCATATTTCACCATATTACTTGTAGATAAAGATGGTGTTCT  750

seq1  CATTTTGCTGAATGTCTGCCTAAATGCCGCCTTATCACAAGCTAGAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTGAATGTCTGCCTAAATGCCGCCTTATCACAAGCTAGAATGA  800

seq1  CTGGAGCTATTATTATGGAAGTCCTGTGATTTGAGCCATTAACAAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTATTATTATGGAAGTCCTGTGATTTGAGCCATTAACAAAATAC  850

seq1  AGATGTTTGTGTGACTGGGTACTGTGTAATTGTGGGCTCACTCCAAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGATGTTTGTGTGACTGGGTACTGTGTAATTGTGGGCTCACTCCAAGTT-  899

seq1  CCATCTACAGCTATGTGTGGTTCCAGCAACAGGCATGGGAATATAATGTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCATCTACAGCTATGTGTGGTTCCAGCAACAGGCATGGGAATATAATG-T  948

seq1  TGCATCACTCTTATATGTCCATGTCTCCATGAACCATAGGCAACCTATAT  1000
      |||||||||||||||||| |||||||||||||| ||||||||| ||||||
seq2  TGCATCACTCTTATATGT-CATGTCTCCATGAA-CATAGGCAA-CTATAT  995

seq1  CCCCAGTTTCTCTGTTCAGGTCCTTCAAATAAAATGCCATTTGAATTTAA  1050
       ||||||||||||||||||   ||||||   ||||| ||||||||||| |
seq2  -CCCAGTTTCTCTGTTCAG--TCTTCAA--TAAATG-CATTTGAATTT-A  1038

seq1  GTCACAGATTAAGGGGAAAAGATAGACTAGTAACAGGAAACAGTCCTTGG  1100
      ||||| |||||| ||||||||| |||||||||||||  |||||||  |||
seq2  GTCAC-GATTAA-GGGAAAAGAAAGACTAGTAACAG--AACAGTC--TGG  1082

seq1  TGCATAATAAGTTATTACTACTGCTGTTATAATG-ACTGTTACAGTTAGT  1149
      ||||||||||| || |||||||||||||| |||| ||||||   ||||||
seq2  TGCATAATAAG-TAATACTACTGCTGTTA-AATGAACTGTTTACGTTAGT  1130

seq1  GTTCTTAAAGCAATATAACATTGTCAGTGTTCAACT  1185
      | || | ||||||||| ||||   ||| ||||||||
seq2  GGTCCT-AAGCAATAT-ACAT--GCAG-GTTCAACT  1161