BAC Information

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BAC

Clone NameB6Ng01-134H05
Chromosome18 (Build37)
Map Location 88,808,570 - 88,985,772
singlet/doubletdoublet
Overlap geneLOC665497, LOC100040003
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134H05.bB6Ng01-134H05.g
ACCDH934744DH934745
length1,0931,092
definitionDH934744|Mus musculus domesticus DNA, BAC clone: B6Ng01-134H05, 5' end.DH934745|Mus musculus domesticus DNA, BAC clone: B6Ng01-134H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,808,570 - 88,809,664)(88,984,667 - 88,985,772)
sequence
gaattcaggacctaatgtgagcaggataaactgagaaagatgctttacta
tgcacggcaaggtcacaccacagtcagggccattgacagacagtagaaag
ggggctcagttcccccaaaggcaacattctaggaagcctggacaagagcc
aatgacctcagttcacgttccacctgcttcctaggagaaagagaaagaac
caacctcttagcttctctggatttgcttgcttcctctgcaaatgagaaag
caacagagttcagcagcatcggttgggtggttttggagacctaagacctt
tgattagtatttgacatttcctaataaccaaaaaagtgcttgtgttatca
gtgccactcaaaatagtccatgagccaaaattaaaagcacagcttctgag
cctagtatacagaaaagaaaaaacgcattgccctgcattcccatactgct
gttgccttgttttgtgtatgcagcacatatcttggtcaactctctgtata
ctctattttctcagagaaagaagtaagttaggtagaacagtggtttaggt
ttagcttacctgaatgtgctcaataagtgcctctactccatgccattgtg
agaatttgctctagtctataagaaagtcaacaggaagttagaaggggttg
tgtccttacctcagcattgtgctaacagcagggagggatggggctgctga
gatgcaccaactcattaattgctcacaattatgcacaagtcacttttgtc
ccatctcttctgttagtgttatgttttcattgttactgattctttcagaa
tttgagtttttttttttttaagatttatttatttattatatgtaagtaca
ctgtaactgtcttcagacactccagaagaggaagtcagatcttgttacgg
gatggttgtgagccaccatgttggtttttgggaattgaactctggacctt
cggagagcagtcggggtgctcttactcactgagccatcagatttgagttt
taaaacgtttaaaaatgtccacatgcttaaaatatttacagtaagttcag
aaatctacttgcaggctgggctatagttaataatgctgtattg
gaattctgtttttagagaaaaggttctcttattctcactgatctgcctct
ggggatggctgtctatgtgctgtggctttgtgtaagttaaactagtcaac
aggaccagtccctaaagtgtgcactcttcacggatcaataatttgatcat
ttctagtgtatagttcactatagaatatatttttccccaaggtaaaagaa
agacatggcaaaaatatttctctttcttaaaaccatttattcaaacaaaa
ataattcatgaaaatatagattttgtttttaaaaagaaaatttatccaca
ttgctaccaagcaggaatgagaatgaatagtgtagtgacaattattccac
ttttaaaatacttgatgccaggtagtaaatgatcctgaaaaggctgggta
atttacactggtggtgtgtgtgtgagagatgatggtatttctaaccacta
tcctcttgttaccagtgagagttgtttattaattttcaaaactaagatct
cactctatagaccaggctggcctggaacttggaatgtagaccgggctggc
ctgagctcacagatcaatctgcctctgcctatagactcctgagttaaagg
tgtaccccaacatgtttattgtttcatttctagttttgatacatttgatg
ggattagaaaaaggttatgatcgctttctttttaaaaatgtatgtgcctg
cttatctaaatgtgtaacgcatacatatagtgcctgcagaggccagaaga
aagtattagatcccttggaactatcgttacagttgtaatatgggtgctgg
gaactgaacccaggtccactgtgatagcagcaagtgctcttaaacattga
accatcacctcagtccctgtgattgtttcatatctgcatatgctaataat
catcaagaaacaatatgctttgatttgtctagggaccagagatctatcat
ctattggtatattttttgctacagtccccggcccctccttttgagagtaa
tacattgagcaaaagaagtgaaaagtgtggtggtacacacatcgtgtact
aacattctgagtggagtagagaattagaagtcaaggtcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88808570_88809664
seq2: B6Ng01-134H05.b_49_1141

seq1  GAATTCAGGACCTAATGTGAGCAGGATAAACTGAGAAAGATGCTTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTAATGTGAGCAGGATAAACTGAGAAAGATGCTTTACTA  50

seq1  TGCACGGCAAGGTCACACCACAGTCAGGGCCATTGACAGACAGTAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGCAAGGTCACACCACAGTCAGGGCCATTGACAGACAGTAGAAAG  100

seq1  GGGGCTCAGTTCCCCCAAAGGCAACATTCTAGGAAGCCTGGACAAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAGTTCCCCCAAAGGCAACATTCTAGGAAGCCTGGACAAGAGCC  150

seq1  AATGACCTCAGTTCACGTTCCACCTGCTTCCTAGGAGAAAGAGAAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTCAGTTCACGTTCCACCTGCTTCCTAGGAGAAAGAGAAAGAAC  200

seq1  CAACCTCTTAGCTTCTCTGGATTTGCTTGCTTCCTCTGCAAATGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTTAGCTTCTCTGGATTTGCTTGCTTCCTCTGCAAATGAGAAAG  250

seq1  CAACAGAGTTCAGCAGCATCGGTTGGGTGGTTTTGGAGACCTAAGACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGTTCAGCAGCATCGGTTGGGTGGTTTTGGAGACCTAAGACCTT  300

seq1  TGATTAGTATTTGACATTTCCTAATAACCAAAAAAGTGCTTGTGTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTATTTGACATTTCCTAATAACCAAAAAAGTGCTTGTGTTATCA  350

seq1  GTGCCACTCAAAATAGTCCATGAGCCAAAATTAAAAGCACAGCTTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTCAAAATAGTCCATGAGCCAAAATTAAAAGCACAGCTTCTGAG  400

seq1  CCTAGTATACAGAAAAGAAAAAACGCATTGCCCTGCATTCCCATACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATACAGAAAAGAAAAAACGCATTGCCCTGCATTCCCATACTGCT  450

seq1  GTTGCCTTGTTTTGTGTATGCAGCACATATCTTGGTCAACTCTCTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGTTTTGTGTATGCAGCACATATCTTGGTCAACTCTCTGTATA  500

seq1  CTCTATTTTCTCAGAGAAAGAAGTAAGTTAGGTAGAACAGTGGTTTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTCTCAGAGAAAGAAGTAAGTTAGGTAGAACAGTGGTTTAGGT  550

seq1  TTAGCTTACCTGAATGTGCTCAATAAGTGCCTCTACTCCATGCCATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTACCTGAATGTGCTCAATAAGTGCCTCTACTCCATGCCATTGTG  600

seq1  AGAATTTGCTCTAGTCTATAAGAAAGTCAACAGGAAGTTAGAAGGGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGCTCTAGTCTATAAGAAAGTCAACAGGAAGTTAGAAGGGGTTG  650

seq1  TGTCCTTACCTCAGCATTGTGCTAACAGCAGGGAGGGATGGGGCTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTACCTCAGCATTGTGCTAACAGCAGGGAGGGATGGGGCTGCTGA  700

seq1  GATGCACCAACTCATTAATTGCTCACAATTATGCACAAGTCACTTTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCAACTCATTAATTGCTCACAATTATGCACAAGTCACTTTTGTC  750

seq1  CCATCTCTTCTGTTAGTGTTATGTTTTCATTGTTACTGATTCTTTCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTCTGTTAGTGTTATGTTTTCATTGTTACTGATTCTTTCAGAA  800

seq1  TTTGAGTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACA  850

seq1  CTGTAACTGTCTTCAGACACTCCAGAAGAGGAAGTCAGATCTTGTTAC-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTAACTGTCTTCAGACACTCCAGAAGAGGAAGTCAGATCTTGTTACGG  900

seq1  GATGGTTGTGAGCCACCATG-TGGTTTCTGGGAATTGAACTCTGGACCTT  948
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  GATGGTTGTGAGCCACCATGTTGGTTTTTGGGAATTGAACTCTGGACCTT  950

seq1  CGGAAGAGCAGTC-GGGTGCTCTTACTCACTGAGCCATCAGAATTTGAGT  997
      ||| ||||||||| ||||||||||||||||||||||||||| ||||||| 
seq2  CGG-AGAGCAGTCGGGGTGCTCTTACTCACTGAGCCATCAG-ATTTGAG-  997

seq1  TTTTAAAACGTTAAAAAATGTCCACATGCTTAAAAATATTACAGTAAGTT  1047
      |||||||||||| ||||||||||||||||||||||   ||||||||||||
seq2  TTTTAAAACGTTTAAAAATGTCCACATGCTTAAAATATTTACAGTAAGTT  1047

seq1  CCAGAAATCTACTGCAAGGCTGTGCTTATAGTTAATAATGCTGTATTG  1095
       ||||||||||||   |||||| || ||||||||||||||||||||||
seq2  -CAGAAATCTACTTGCAGGCTGGGC-TATAGTTAATAATGCTGTATTG  1093

seq1: chr18_88984667_88985772
seq2: B6Ng01-134H05.g_71_1162 (reverse)

seq1  GAATGACCTTGACTTACTAATTCTACTACCTCCACTTCCAGAATGTTAAT  50
      ||||||||||||||| |||||||| ||| |||||||  ||||||||| | 
seq2  GAATGACCTTGACTT-CTAATTCT-CTA-CTCCACT--CAGAATGTT-AG  44

seq1  TACAACGATGTGTGTACCACCACAACCTGTTTCACCTTCTTTTGCTCAAT  100
      ||| ||||||||||||||||||||  || ||||| |||||||||||||||
seq2  TAC-ACGATGTGTGTACCACCACA--CT-TTTCA-CTTCTTTTGCTCAAT  89

seq1  GTATTACTCTCAAAAAGGAGGGGCCGTGGGACTGTAGCAGAAAATATACC  150
      ||||||||||| |||||||||||||| |||||||||||| ||||||||||
seq2  GTATTACTCTC-AAAAGGAGGGGCCG-GGGACTGTAGCAAAAAATATACC  137

seq1  AATAGATGATAGATCTCTGGTCCCTAGACAAATCAAAGCATATTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGATAGATCTCTGGTCCCTAGACAAATCAAAGCATATTGTTTCT  187

seq1  TGATGATTATTAGCATACTGCAGATATGAAACAATCACAGGGACTGAGGT  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATGATTATTAGCATA-TGCAGATATGAAACAATCACAGGGACTGAGGT  236

seq1  GATGGTTCAATGTTTAAGAGCACTTGCTGCTATCACAGTGGACCTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCAATGTTTAAGAGCACTTGCTGCTATCACAGTGGACCTGGGTT  286

seq1  CAGTTCCCAGCACCCATATTACAACTGTAACGATAGTTCCAAGGGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCAGCACCCATATTACAACTGTAACGATAGTTCCAAGGGATCTA  336

seq1  ATACTTTCTTCTGGCCTCTGCAGGCACTATATGTATGCGTTACACATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCTTCTGGCCTCTGCAGGCACTATATGTATGCGTTACACATTTA  386

seq1  GATAAGCAGGCACATACATTTTTAAAAAGAAAGCGATCATAACCTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCAGGCACATACATTTTTAAAAAGAAAGCGATCATAACCTTTTTC  436

seq1  TAATCCCATCAAATGTATCAAAACTAGAAATGAAACAATAAACATGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCATCAAATGTATCAAAACTAGAAATGAAACAATAAACATGTTGG  486

seq1  GGTACACCTTTAACTCAGGAGTCTATAGGCAGAGGCAGATTGATCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACCTTTAACTCAGGAGTCTATAGGCAGAGGCAGATTGATCTGTGA  536

seq1  GCTCAGGCCAGCCCGGTCTACATTCCAAGTTCCAGGCCAGCCTGGTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCCAGCCCGGTCTACATTCCAAGTTCCAGGCCAGCCTGGTCTAT  586

seq1  AGAGTGAGATCTTAGTTTTGAAAATTAATAAACAACTCTCACTGGTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGATCTTAGTTTTGAAAATTAATAAACAACTCTCACTGGTAACA  636

seq1  AGAGGATAGTGGTTAGAAATACCATCATCTCTCACACACACACCACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAGTGGTTAGAAATACCATCATCTCTCACACACACACCACCAGT  686

seq1  GTAAATTACCCAGCCTTTTCAGGATCATTTACTACCTGGCATCAAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTACCCAGCCTTTTCAGGATCATTTACTACCTGGCATCAAGTATT  736

seq1  TTAAAAGTGGAATAATTGTCACTACACTATTCATTCTCATTCCTGCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGGAATAATTGTCACTACACTATTCATTCTCATTCCTGCTTGG  786

seq1  TAGCAATGTGGATAAATTTTCTTTTTAAAAACAAAATCTATATTTTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGTGGATAAATTTTCTTTTTAAAAACAAAATCTATATTTTCATG  836

seq1  AATTATTTTTGTTTGAATAAATGGTTTTAAGAAAGAGAAATATTTTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTGTTTGAATAAATGGTTTTAAGAAAGAGAAATATTTTTGCC  886

seq1  ATGTCTTTCTTTTACCTTGGGGAAAAATATATTCTATAGTGAACTATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCTTTTACCTTGGGGAAAAATATATTCTATAGTGAACTATACA  936

seq1  CTAGAAATGATCAAATTATTGATCCGTGAAGAGTGCACACTTTAGGGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATGATCAAATTATTGATCCGTGAAGAGTGCACACTTTAGGGACT  986

seq1  GGTCCTGTTGACTAGTTTAACTTACACAAAGCCACAGCACATAGACAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTTGACTAGTTTAACTTACACAAAGCCACAGCACATAGACAGCC  1036

seq1  ATCCCCAGAGGCAGATCAGTGAGAATAAGAGAACCTTTTCTCTAAAAACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGAGGCAGATCAGTGAGAATAAGAGAACCTTTTCTCTAAAAACA  1086

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1092