BAC Information

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BAC

Clone NameB6Ng01-134M07
Chromosome18 (Build37)
Map Location 88,867,739 - 89,016,707
singlet/doubletdoublet
Overlap geneLOC665497, LOC100040003, LOC623208
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneSocs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M07.bB6Ng01-134M07.g
ACCDH934982DH934983
length6361,086
definitionDH934982|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M07, 5' end.DH934983|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,016,072 - 89,016,707)(88,867,739 - 88,868,838)
sequence
gaattcatcattttagtcacactgtcaatgagccttcagtatactcttct
ctctgcaaatccaccatgctggggttacagacctgcatcatcaatgcagt
tttttgttttgttttgtttaaaaaaaaaaaaaacttgggtgatgaaaatg
tatacctggttcctcatgtaccaggggctagcactgcatccagttccctg
aggaggacagcagcgagagggttggagtcatcaattgcatggccaaaagc
tgcttactttcagcaagttaactttctttaactctttgcagttctgtggc
taaaagcccaaaatgttttagtcaatttaactcctgctgatagcagcaag
aagttaagaagaaaggctaaacctaggttctttcctctttacctcaaggg
gtcctcaatggccaggaaagaggcttggaattatttaactttttgtgagc
tctgggggaggacccatggcgctggccacataagtggcagaggatagcct
tgttggacatcagtaggaggagaggcccttgggcctgagggtgttcaatg
ccccagtgtaggggaatgccagggcaggaggacaggagtagggggcgcac
cctcatagaggcaggggaggggagatgggatggggg
gaattcttagaacaagaatatattgcatatggtaatgcatttttaaatga
taaataccaaccccagttcatgaagccaggtttagttcgaacatcctgga
tgaacagaaccagataacatgagatgactacctctcagattttaaatgaa
aatatatgatgatttagttgcttgggttcatgtagtttggaatctattgt
taactgtagagacactgtataaatttgaaaaatggattgatctttaaatg
aactaatgaggttttctcagaataaatttctgagcacagttgctagtgtg
ggaaatatttcatccaaagaagtaaaaatatcaatagcaataaagagact
tgtctttttctcccccaaaggagtcagtgtaaaccataagcagtgattta
tcttaccactttttacagaaaatctctgccaagtagaaataattacactt
ggcctgcatattttaccgccatttatgtgatcaaccacacatgaaacaat
cctaacactcataagtaatatatttttaacattcatacatttttacttga
atgaatctcacactcaaaattatcatatcaaaagatatttaaaacacaca
aaacaataggaatatttacagttgtgacatctttgaaatgttttgcccac
tatgcttcggcctatcaagttggtatttctgtgtgcctgtaatattttta
gagaatataaacttgctgtaaatgtacagatttcactaacttcacatttg
tttagtatgtttttgtttataaggatctaatttagtttttcaaatgatcc
attcaaatcaattttataccatcatgtttctccaatgggttctgattttc
ttaaggtgcattttctgacgatcagagtcctaagagatttgtgatagtgg
gttcccttggattcattctcatcttgatgattcacacttaaatagttcag
tagagtagggttcttatttttcattctgctcataagtaattcaaaataac
catattttcctttctttcatctttaaataaaaaaccacaggcataattct
ggtaaatgatcatgatcttcaatctcattccaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89016072_89016707
seq2: B6Ng01-134M07.b_46_681 (reverse)

seq1  CCCCCATCCCATCTCCCCTCCCCTGCCTCTATGAGGGTGCGCCCCCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCCCATCTCCCCTCCCCTGCCTCTATGAGGGTGCGCCCCCTACT  50

seq1  CCTGTCCTCCTGCCCTGGCATTCCCCTACACTGGGGCATTGAACACCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCCTGCCCTGGCATTCCCCTACACTGGGGCATTGAACACCCTC  100

seq1  AGGCCCAAGGGCCTCTCCTCCTACTGATGTCCAACAAGGCTATCCTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGGGCCTCTCCTCCTACTGATGTCCAACAAGGCTATCCTCTGC  150

seq1  CACTTATGTGGCCAGCGCCATGGGTCCTCCCCCAGAGCTCACAAAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGTGGCCAGCGCCATGGGTCCTCCCCCAGAGCTCACAAAAAGTT  200

seq1  AAATAATTCCAAGCCTCTTTCCTGGCCATTGAGGACCCCTTGAGGTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCCAAGCCTCTTTCCTGGCCATTGAGGACCCCTTGAGGTAAAG  250

seq1  AGGAAAGAACCTAGGTTTAGCCTTTCTTCTTAACTTCTTGCTGCTATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAACCTAGGTTTAGCCTTTCTTCTTAACTTCTTGCTGCTATCAG  300

seq1  CAGGAGTTAAATTGACTAAAACATTTTGGGCTTTTAGCCACAGAACTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTAAATTGACTAAAACATTTTGGGCTTTTAGCCACAGAACTGCA  350

seq1  AAGAGTTAAAGAAAGTTAACTTGCTGAAAGTAAGCAGCTTTTGGCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTAAAGAAAGTTAACTTGCTGAAAGTAAGCAGCTTTTGGCCATGC  400

seq1  AATTGATGACTCCAACCCTCTCGCTGCTGTCCTCCTCAGGGAACTGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGACTCCAACCCTCTCGCTGCTGTCCTCCTCAGGGAACTGGATG  450

seq1  CAGTGCTAGCCCCTGGTACATGAGGAACCAGGTATACATTTTCATCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTAGCCCCTGGTACATGAGGAACCAGGTATACATTTTCATCACCC  500

seq1  AAGTTTTTTTTTTTTTTAAACAAAACAAAACAAAAAACTGCATTGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTTTTTTTTAAACAAAACAAAACAAAAAACTGCATTGATGAT  550

seq1  GCAGGTCTGTAACCCCAGCATGGTGGATTTGCAGAGAGAAGAGTATACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTGTAACCCCAGCATGGTGGATTTGCAGAGAGAAGAGTATACTG  600

seq1  AAGGCTCATTGACAGTGTGACTAAAATGATGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCATTGACAGTGTGACTAAAATGATGAATTC  636

seq1: chr18_88867739_88868838
seq2: B6Ng01-134M07.g_69_1154

seq1  GAATTCTTAGAACAAGAATATATTGCATATGGTAATGCATTTTTAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAACAAGAATATATTGCATATGGTAATGCATTTTTAAATGA  50

seq1  TAAATACCAACCCCAGTTCATGAAGCCAGGTTTAGTTCGAACATCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAACCCCAGTTCATGAAGCCAGGTTTAGTTCGAACATCCTGGA  100

seq1  TGAACAGAACCAGATAACATGAGATGACTACCTCTCAGATTTTAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGAACCAGATAACATGAGATGACTACCTCTCAGATTTTAAATGAA  150

seq1  AATATATGATGATTTAGTTGCTTGGGTTCATGTAGTTTGGAATCTATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATGATTTAGTTGCTTGGGTTCATGTAGTTTGGAATCTATTGT  200

seq1  TAACTGTAGAGACACTGTATAAATTTGAAAAATGGATTGATCTTTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAGAGACACTGTATAAATTTGAAAAATGGATTGATCTTTAAATG  250

seq1  AACTAATGAGGTTTTCTCAGAATAAATTTCTGAGCACAGTTGCTAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGAGGTTTTCTCAGAATAAATTTCTGAGCACAGTTGCTAGTGTG  300

seq1  GGAAATATTTCATCCAAAGAAGTAAAAATATCAATAGCAATAAAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTTCATCCAAAGAAGTAAAAATATCAATAGCAATAAAGAGACT  350

seq1  TGTCTTTTTCTCCCCCAAAGGAGTCAGTGTAAACCATAAGCAGTGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTCTCCCCCAAAGGAGTCAGTGTAAACCATAAGCAGTGATTTA  400

seq1  TCTTACCACTTTTTACAGAAAATCTCTGCCAAGTAGAAATAATTACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCACTTTTTACAGAAAATCTCTGCCAAGTAGAAATAATTACACTT  450

seq1  GGCCTGCATATTTTACCGCCATTTATGTGATCAACCACACATGAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCATATTTTACCGCCATTTATGTGATCAACCACACATGAAACAAT  500

seq1  CCTAACACTCATAAGTAATATATTTTTAACATTCATACATTTTTACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACTCATAAGTAATATATTTTTAACATTCATACATTTTTACTTGA  550

seq1  ATGAATCTCACACTCAAAATTATCATATCAAAAGATATTTAAAACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTCACACTCAAAATTATCATATCAAAAGATATTTAAAACACACA  600

seq1  AAACAATAGGAATATTTACAGTTGTGACATCTTTGAAATGTTTTGCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGGAATATTTACAGTTGTGACATCTTTGAAATGTTTTGCCCAC  650

seq1  TATGCTTCGGCCTATCAAGTTGGTATTTCTGTGTGCCTGTAATATTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCGGCCTATCAAGTTGGTATTTCTGTGTGCCTGTAATATTTTTA  700

seq1  GAGAATATAAACTTGCTGTAAATGTACAGATTTCACTAACTTCACATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATAAACTTGCTGTAAATGTACAGATTTCACTAACTTCACATTTG  750

seq1  TTTAGTATGTTTTTGTTTATAAGGATCTAATTTAGTTTTTCAAATGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATGTTTTTGTTTATAAGGATCTAATTTAGTTTTTCAAATGATCC  800

seq1  ATTCAAATCAATTTTATACCATCATGTTTCTCCAATGGGTTCTGATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCAATTTTATACCATCATGTTTCTCCAATGGGTTCTGATTTTC  850

seq1  CTAAGGTGCATTTTCTGACGATCAGAGTCCTAAGAGATTTGTGATAGTGG  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTGCATTTTCTGACGATCAGAGTCCTAAGAGATTTGTGATAGTGG  900

seq1  GTTCCCTTGGATTCATTCTCATCTTGATGATTCACACTTAAATAGTTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCCCTTGGATTCATTCTCATCTTGATGATTCACACTTAAATAGTTCA-  949

seq1  GTAGAGTAGGGGTCCTTATTTTTCATTCTGCCTTCATAAGTAATTCAAAA  1000
      |||||||| |||| |||||||||||||||||  |||||||||||||||||
seq2  GTAGAGTA-GGGTTCTTATTTTTCATTCTGC--TCATAAGTAATTCAAAA  996

seq1  ATAAACCATATTTTTCCTTTCTTTCATTCTTTTTAAATAAAAAA-CACAG  1049
         ||||||| |||||||||||||||   | ||||||||||||| |||||
seq2  --TAACCATA-TTTTCCTTTCTTTCA---TCTTTAAATAAAAAACCACAG  1040

seq1  GCATTATATTCT-GTAAATGATCATGGCCCTTTTCAAATCTCATTCCAAA  1098
      ||||   ||||| |||||||||||||    | ||| ||||||||||||||
seq2  GCAT--AATTCTGGTAAATGATCATG---ATCTTC-AATCTCATTCCAAA  1084

seq1  TC  1100
      ||
seq2  TC  1086