BAC Information

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BAC

Clone NameB6Ng01-137B19
Chromosome18 (Build37)
Map Location 49,180,735 - 49,226,054
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137B19.bB6Ng01-137B19.g
ACCDH936711DH936712
length1,070604
definitionDH936711|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B19, 5' end.DH936712|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,180,735 - 49,181,813)(49,225,451 - 49,226,054)
sequence
gaattcttgcatcaatgtgtcctatgaagggccctcaaagactgctaagg
actcacggctcacacagaggagagaacctgtcaaagccggtttgacctac
tgagcaccgggtgtacaacaagcaagtctgatatggcagaagccaaataa
tacctaaaggagtgtgagccagactcttcctggacctcaaacaccgttta
ttcttagtcacagcaatatttcttttcttcctagtggtattttgcttaat
gttaactttcctcccaaagcaaagctgagcacaagcagaggtgcaaagat
atttttagatttcttttagtgcttttttttgtaaagggcaaaatgcccat
gttcttatgctccagggatgtgtcaacttcacacaaggctcaagtgttta
gcacggctgaggaaacgattctgaatatttcagtgttaacatattttact
gattcaattgtctcaggaaagagtaagtcgataaaaacaactactctaaa
gacacatatgctgtgtcgcaatgagaatctatacagctctgtagtccaca
caatcaattcattgtgggtttttcaaaattttcttttatttttttgagat
gaatataattacatcattccccctctcctttcaccataaccccatccaac
catatagctctacttggtttctatttcttggcctcttttttcatgcattg
tggttacatgcctatgtatatatccctagatgcataaatacaacctgctc
agtctacatgatattacttgtatgcatgttttcagtgcagaccatttggc
actatataaacacggtgccaagcaggtttcctaggaaggaaaggaagcaa
caacgttacccagctatgaaccacaacaataaacagcactacgtgataac
cctaacagtgcagtaatgccaaacactccgtggcagtgaccatgagctct
caaactgaacttagatccagtcaacagagaaaatcatgcctgctacagac
tttagctattacccaaggctagtaaagtcaaggatcttatagagagccta
cagcaatacatagctactct
gaattcttacctgagaataaagctgtgttagtttaaaacattgaagtatt
tttaaaaacatgttaagactattgcgtgtgtgacttgtggtataatgctt
gtagtttgatggtgtgtacaaatatattttgggcaaattttgttattttg
tcatctgagcagtgaagtaaggagcattggctgtaaatggattcttcaca
gctcaattatccaagaaattttcaaaataaaggtttaggaatcctccagg
gaaagaaatagatagattagaccatcttaggacaagaatttcttactttg
catttgtgcctgatctgcttcttgtgttccttctttgttaacacttgtaa
gatgtgaactgaaggcttatttctttctcatcctgaggcaatattaatgg
aaccaaaattggttgcataacagtctgaaaaatcaaaagacccacataaa
tgtcaaattatcaacatttcccattgattcattagcaaaactgatcttta
gtttttattaaatagtacctttcaaaaatgtgtggcttgctctgcactca
taacttccattctctctctctctctctctctctctctctctctctctctc
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49180735_49181813
seq2: B6Ng01-137B19.b_45_1114

seq1  GAATTCTTGCATCAATGTGTCCTATGAAGGGCCCTCAAAGACTGCTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATCAATGTGTCCTATGAAGGGCCCTCAAAGACTGCTAAGG  50

seq1  ACTCACGGCTCACACAGAGGAGAGAACCTGTCAAAGCCGGTTTGACCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGGCTCACACAGAGGAGAGAACCTGTCAAAGCCGGTTTGACCTAC  100

seq1  TGAGCACCGGGTGTACAACAAGCAAGTCTGATATGGCAGAAGCCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCGGGTGTACAACAAGCAAGTCTGATATGGCAGAAGCCAAATAA  150

seq1  TACCTAAAGGAGTGTGAGCCAGACTCTTCCTGGACCTCAAACACCGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAAGGAGTGTGAGCCAGACTCTTCCTGGACCTCAAACACCGTTTA  200

seq1  TTCTTAGTCACAGCAATATTTCTTTTCTTCCTAGTGGTATTTTGCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTCACAGCAATATTTCTTTTCTTCCTAGTGGTATTTTGCTTAAT  250

seq1  GTTAACTTTCCTCCCAAAGCAAAGCTGAGCACAAGCAGAGGTGCAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTTCCTCCCAAAGCAAAGCTGAGCACAAGCAGAGGTGCAAAGAT  300

seq1  ATTTTTAGATTTCTTTTAGTGCTTTTTTTTGTAAAGGGCAAAATGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGATTTCTTTTAGTGCTTTTTTTTGTAAAGGGCAAAATGCCCAT  350

seq1  GTTCTTATGCTCCAGGGATGTGTCAACTTCACACAAGGCTCAAGTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATGCTCCAGGGATGTGTCAACTTCACACAAGGCTCAAGTGTTTA  400

seq1  GCACGGCTGAGGAAACGATTCTGAATATTTCAGTGTTAACATATTTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCTGAGGAAACGATTCTGAATATTTCAGTGTTAACATATTTTACT  450

seq1  GATTCAATTGTCTCAGGAAAGAGTAAGTCGATAAAAACAACTACTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATTGTCTCAGGAAAGAGTAAGTCGATAAAAACAACTACTCTAAA  500

seq1  GACACATATGCTGTGTCGCAATGAGAATCTATACAGCTCTGTAGTCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATATGCTGTGTCGCAATGAGAATCTATACAGCTCTGTAGTCCACA  550

seq1  CAATCAATTCATTGTGGGTTTTTCAAAATTTTCTTTTATTTTTTTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATTCATTGTGGGTTTTTCAAAATTTTCTTTTATTTTTTTGAGAT  600

seq1  GAATATAATTACATCATTCCCCCTCTCCTTTCACCATAACCCCATCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATTACATCATTCCCCCTCTCCTTTCACCATAACCCCATCCAAC  650

seq1  CATATAGCTCTACTTGGTTTCTATTTCTTGGCCTCTTTTTTCATGCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCTCTACTTGGTTTCTATTTCTTGGCCTCTTTTTTCATGCATTG  700

seq1  TGGTTACATGCCTATGTATATATCCCTAGATGCATAAATACAACCTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACATGCCTATGTATATATCCCTAGATGCATAAATACAACCTGCTC  750

seq1  AGTCTACATGATATTACTTGTATGCATGTTTTCAGTGCAGACCATTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACATGATATTACTTGTATGCATGTTTTCAGTGCAGACCATTTGGC  800

seq1  ACTATATAAACACGGTGCCAAGCAGGTTTCCTAGGAAGGAAAGGAAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAAACACGGTGCCAAGCAGGTTTCCTAGGAAGGAAAGGAAGCAA  850

seq1  CAACGTTACCCAGCTATGAACCACAACAATAAACAGCACTACGTGATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTACCCAGCTATGAACCACAACAATAAACAGCACTACGTGATAAC  900

seq1  CCTAACAGTGCAGTAATGCCAAACACTCCGTGGCAGTGACCATGAGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGTGCAGTAATGCCAAACACTCCGTGGCAGTGACCATGAGCTCT  950

seq1  CAAACTGAACTTAAGATCCAGTCAACAAGAGAAAAATCATGCCTGCTACA  1000
      |||||||||||| ||||||||||||| |||| ||||||||||||||||||
seq2  CAAACTGAACTT-AGATCCAGTCAAC-AGAG-AAAATCATGCCTGCTACA  997

seq1  AGAACTTTAGCTAATTACCCAAGGCTAGTAAAGTCAAAGATCTTATAGAA  1050
         ||||||||| |||||||||||||||||||||||| |||||||||| |
seq2  --GACTTTAGCT-ATTACCCAAGGCTAGTAAAGTCAAGGATCTTATAG-A  1043

seq1  GAGCCTACAAGCAATACATAGCTAACTCT  1079
      |||||||| |||||||||||||| |||||
seq2  GAGCCTAC-AGCAATACATAGCT-ACTCT  1070

seq1: chr18_49225451_49226054
seq2: B6Ng01-137B19.g_68_671 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGAA  50

seq1  GTTATGAGTGCAGAGCAAGCCACACATTTTTGAAAGGTACTATTTAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGTGCAGAGCAAGCCACACATTTTTGAAAGGTACTATTTAATAA  100

seq1  AAACTAAAGATCAGTTTTGCTAATGAATCAATGGGAAATGTTGATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAGATCAGTTTTGCTAATGAATCAATGGGAAATGTTGATAATTT  150

seq1  GACATTTATGTGGGTCTTTTGATTTTTCAGACTGTTATGCAACCAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATGTGGGTCTTTTGATTTTTCAGACTGTTATGCAACCAATTTT  200

seq1  GGTTCCATTAATATTGCCTCAGGATGAGAAAGAAATAAGCCTTCAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCATTAATATTGCCTCAGGATGAGAAAGAAATAAGCCTTCAGTTCA  250

seq1  CATCTTACAAGTGTTAACAAAGAAGGAACACAAGAAGCAGATCAGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACAAGTGTTAACAAAGAAGGAACACAAGAAGCAGATCAGGCACA  300

seq1  AATGCAAAGTAAGAAATTCTTGTCCTAAGATGGTCTAATCTATCTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAGTAAGAAATTCTTGTCCTAAGATGGTCTAATCTATCTATTTC  350

seq1  TTTCCCTGGAGGATTCCTAAACCTTTATTTTGAAAATTTCTTGGATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGGAGGATTCCTAAACCTTTATTTTGAAAATTTCTTGGATAATT  400

seq1  GAGCTGTGAAGAATCCATTTACAGCCAATGCTCCTTACTTCACTGCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGAAGAATCCATTTACAGCCAATGCTCCTTACTTCACTGCTCAG  450

seq1  ATGACAAAATAACAAAATTTGCCCAAAATATATTTGTACACACCATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAATAACAAAATTTGCCCAAAATATATTTGTACACACCATCAAA  500

seq1  CTACAAGCATTATACCACAAGTCACACACGCAATAGTCTTAACATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCATTATACCACAAGTCACACACGCAATAGTCTTAACATGTTTT  550

seq1  TAAAAATACTTCAATGTTTTAAACTAACACAGCTTTATTCTCAGGTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACTTCAATGTTTTAAACTAACACAGCTTTATTCTCAGGTAAGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604