BAC Information

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BAC

Clone NameB6Ng01-139F13
Chromosome18 (Build37)
Map Location 5,059,724 - 5,060,672
singlet/doubletsinglet
Overlap geneSvil
Upstream geneLyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneZfp438, LOC100039442, Zeb1, EG664925, Arhgap12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139F13.bB6Ng01-139F13.g
ACCDH938356DH938357
length1,116952
definitionDH938356|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F13, 5' end.DH938357|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatataatgttggatattagtcc
cctatctgatttaggataggtaaagatcctgtcccaatctcttagtggcc
tttttgtcttattgacggtgtcttttgccttgcagaacctttccaacttt
atgaggtcccatttattgattctcaatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatatcttcaagggttttcccta
ctttttcctcaataagtttcagtgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataggaatggatcaattca
cattcttctacatgataaccgccagttgtgccagcaccatttgttgaaga
tgctgtcttttttccactggattgtttttgctcccttgtcaaagatcaag
tgaccataggtgtgtggattcatttctgggtcttcaattctattccattg
gtctacttgtctgtcagtataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagttttcgctatcctaggttttttgttattccagat
taatttgaagattgtcctttctaattcgttgaagaattgtgttggaattt
tgatgggggttgcattgaatctgtagattgcttttggcaagatagccatt
tttactatattgatccttccaatccatgagcatgggagatctttccatct
tctgagctcttctttaatttcttttcttcagagacttttagttcttatca
tacagattctttcacttccttagttagagtcaggccaggtattttttatt
gtttgtgatttggagaaggtgttgtttcccttatttcttcttagcctgtt
tatctttgtgtcaggaaggcatgatttgtttgaattaatttttatccagc
tacttcaatgagcgttttatcaggctaaggagttcttctgggtgaatttt
aggtcacttataaata
gaattcaaggcttcccggtgcaccgtggcactgggcgctacgtgcagcta
tgtgtgtccagtacctggcaggctgcacactgcttctagctacagtgggg
ctaggaagtctcgccgttacagggtgggtgaccccagaacacgaagcagg
gataggttcactttaaaagcaatggccaaaggaggagcattcatgaggag
agagaagaaaagaagcattaaagaaggcagagctgtaaatctggagaggc
aaaagtcaaatattttaccaaaaatatttgctaaacactttgaggggaaa
tgaatcacaaaagaacgttggaaagcgacacagatggaaggaatgggagg
catgggcctcccagagtaaacggacaagcagaggagtaagctggaagaaa
agccggcttagaacagacaatctcattttaagaagtcatttaaaaagcaa
gtatcaaccacagctggccaaaagagtccatccacagttcagagccaacc
caaggcattattctgtaaacaaatggctatgctatgagtcatgggtaaat
gcacagatggacttgtctacacacacatcaggaaagcgaggagcctaagg
ctgggatgtagctcagtggtaaagcattgtccagagtgcacagggtcggg
gaacgccatgaaggccaatgacctcacaacaggctccaacagcaaacctg
caggcagaggttcctttagggatgtcaccactccacagataatgatttta
aaactaatacacactctcaattgactggatcagctaactgtgaatggccc
agtcaagggaatctcggacactagcacactgccccagtgcaggcctcctg
ttgtctggaaagtttcaaaccgcccaattcatttttagacactttgccat
tgatttaaaaacaagatgaatgggttatctctaaaggtattactaaaata
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_5059724_5060672
seq2: B6Ng01-139F13.g_70_1021 (reverse)

seq1  AATATTTTAGTATATACCTCTAAGAGATAA-CCATTCATCTTGTTTTTAA  49
      |||||||||||| |||||| | |||||||| |||||||||||||||||||
seq2  AATATTTTAGTA-ATACCT-TTAGAGATAACCCATTCATCTTGTTTTTAA  48

seq1  ATCATTGCCAAAGTGTCTAAAAATGAATT-GGCGGTTTGACACTTTCCAG  98
      |||| || ||||||||||||||||||||| |||||||||| |||||||||
seq2  ATCAATGGCAAAGTGTCTAAAAATGAATTGGGCGGTTTGAAACTTTCCAG  98

seq1  ACAACAGGAGGCCTGCACTGGGGCAGTGTGCTAGTGTCCGAGATTCCCTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGGAGGCCTGCACTGGGGCAGTGTGCTAGTGTCCGAGATTCCCTT  148

seq1  GACTGGGCCATTCACAGTTAGCTGATCCAGTCAATTGAGAGTGTGTATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCCATTCACAGTTAGCTGATCCAGTCAATTGAGAGTGTGTATTA  198

seq1  GTTTTTAAATCA-TATCTGTGGAGTGGTGACATCCCTAA--GGACCTCTG  245
      ||||| |||||| ||||||||||||||||||||||||||  | |||||||
seq2  GTTTTAAAATCATTATCTGTGGAGTGGTGACATCCCTAAAGGAACCTCTG  248

seq1  CCTGCAGGTTTGCTGTTGGAGCCTGTTGTGAGGTCATTGGCCTTCATGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGTTTGCTGTTGGAGCCTGTTGTGAGGTCATTGGCCTTCATGGC  298

seq1  GTTCCCCGACCCTGTGCACTCTGGACAATGCTTTACCACTGAGCTACATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCGACCCTGTGCACTCTGGACAATGCTTTACCACTGAGCTACATC  348

seq1  CCAGCCTTAGGCTCCTCGCTTTCCTGATGTGTGTGTAGACAAGTCCATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTAGGCTCCTCGCTTTCCTGATGTGTGTGTAGACAAGTCCATCT  398

seq1  GTGCATTTACCCATGACTCATAGCATAGCCATTTGTTTACAGAATAATGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTACCCATGACTCATAGCATAGCCATTTGTTTACAGAATAATGC  448

seq1  CTTGGGTTGGCTCTGAACTGTGGATGGACTCTTTTGGCCAGCTGTGGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTGGCTCTGAACTGTGGATGGACTCTTTTGGCCAGCTGTGGTTG  498

seq1  ATACTTGCTTTTTAAATGACTTCTTAAAATGAGATTGTCTGTTCTAAGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCTTTTTAAATGACTTCTTAAAATGAGATTGTCTGTTCTAAGCC  548

seq1  GGCTTTTCTTCCAGCTTACTCCTCTGCTTGTCCGTTTACTCTGGGAGGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTTCCAGCTTACTCCTCTGCTTGTCCGTTTACTCTGGGAGGCC  598

seq1  CATGCCTCCCATTCCTTCCATCTGTGTCGCTTTCCAACGTTCTTTTGTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCCCATTCCTTCCATCTGTGTCGCTTTCCAACGTTCTTTTGTGA  648

seq1  TTCATTTCCCCTCAAAGTGTTTAGCAAATATTTTTGGTAAAATATTTGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCCCTCAAAGTGTTTAGCAAATATTTTTGGTAAAATATTTGAC  698

seq1  TTTTGCCTCTCCAGATTTACAGCTCTGCCTTCTTTAATGCTTCTTTTCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTCTCCAGATTTACAGCTCTGCCTTCTTTAATGCTTCTTTTCTT  748

seq1  CTCTCTCCTCATGAATGCTCCTCCTTTGGCCATTGCTTTTAAAGTGAACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCATGAATGCTCCTCCTTTGGCCATTGCTTTTAAAGTGAACC  798

seq1  TATCCCTGCTTCGTGTTCTGGGGTCACCCACCCTGTAACGGCGAGACTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGCTTCGTGTTCTGGGGTCACCCACCCTGTAACGGCGAGACTTC  848

seq1  CTAGCCCCACTGTAGCTAGAAGCAGTGTGCAGCCTGCCAGGTACTGGACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCACTGTAGCTAGAAGCAGTGTGCAGCCTGCCAGGTACTGGACA  898

seq1  CACATAGCTGCACGTAGCGCCCAGTGCCACGGTGCACCGGGAAGCCTTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCTGCACGTAGCGCCCAGTGCCACGGTGCACCGGGAAGCCTTGA  948

seq1  ATTC  949
      ||||
seq2  ATTC  952