BAC Information

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BAC

Clone NameB6Ng01-140D08
Chromosome18 (Build37)
Map Location 87,033,390 - 87,188,433
singlet/doubletdoublet
Overlap geneLOC435580, LOC546719
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D08.bB6Ng01-140D08.g
ACCDH938999DH939000
length1,0411,112
definitionDH938999|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D08, 5' end.DH939000|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,187,360 - 87,188,433)(87,033,390 - 87,034,529)
sequence
gaattcaaaccctagggatcagaaactcatttctaggtttggaatctaca
ttaccctagtgtgtttgagatatgcaaaaatcatttcctctacagctcag
ggatgtctacaaggctcccaaatcaggcaaaagcaagatgattgccaagg
atacaaaagtctcttaacacttcattactgttattctttctgccatatta
gtcatctgtggtctcagagccttgaaagaatttttagcacctcagaatct
attgtgtattttcaacgatttttttctttgtaaaaatccattttaaatct
tcactaagagaaaatctgatactttttttttttgcttcactttaacatgt
aaaactttcaagtatttgttaaaagtagtactttatattttgtccaatat
tggtagttttaacattatcattatttttggtgtttaaattcaaatgaaat
taaactttattccatcaaatcacaattgtggagggttgcctgagaatggc
caccataaacacatggtttaaaagcctttttccagtttgtgaacatagtt
gggaaggattacaagttatggccttgatgaagaaaacctcacttttggtt
tgaaaagtatgtactattcccagtatttttctttctctgcctcctcttct
tagcttaagatagaagctctctcagctatgactccagtgccaagtctgct
gtctccagttgcattacacactgtgatctttgtggactcatcctctgcac
cctatattcccccccaatcaactctcactatgctgatgagttctcggtat
cttattgcatccatgggtcattactaagtcagagcacatcttaagataag
tactatctgtgttgtccgcaaaataggaatagtctataaataaacattcc
tccatagaacagacatgcagttaaaaaaaaagtgagcaaaaagatcaatt
ttgtaaatatttacagatttgagaatcaggctgaagactcgagtctagac
tggttcctcaggttctcaccagcaggcctggagatgactga
gaattcaatcattcaaatatttttgtgttagcaagaatttctattagtcc
ctatttatttagctgtagaggagtacttagtcatttcttccctccatcat
aaaaagttatatcactcactaccttaactagataagactatatttctcct
gactttagaccttatgcctttgatttcagattcttagtaacatactggct
tatttaagacagtgaaaagcatgcagctctgcagaatatccagtattgtg
gagattcatcacatctctgaactcaagatgtagagagaggatatttacag
gttatcctttacttgtgtagtgagatccattcaggctaaccttcataaaa
tgagaaaaggaaaagtacaacccttataaaaacatgtcttgtaactgcaa
tatattttcaagatatattgatttttaactcaccagagaacaactgttga
tattttttgagtgtaaataaatacaagtaaatattttttttaaagaaatc
aacaatttgtgacaaaaaaggttactggcaagtgactgcttaatagatgt
tgtctcattaaaatttaaattgaccataggctaactatgaaaattttatt
tgtggatcctgtatttcaaggatcaaaaaaagacatgactcatggaatct
tgaagtgtcacataacagactgatgataacttcttttattataataaaaa
gtcaatgcttcattcttctactctgctgatatgtaagcatcaactgtgag
taaattaactctcagattacactactgagaccctacgtatacaaatcatc
ataaattgtaagaggtgtggcatttgtttttgcattgtttctggaaacat
ctgactgaatgtgtgaagttaaggaatacatgttagtgaatgacttagca
ctaacaaatattatatctgctagcttctgactgaaggctggagggttgtg
ttttcagagttttactatctggggaattcacagctgtgctatacatccat
cactgagtataatggaacgtgtactacatgtttgttatacagactcactt
aggtgactagatatggtgtttgatcctttgatcaaatcctactatgcgtg
ggaccagtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87187360_87188433
seq2: B6Ng01-140D08.b_47_1087 (reverse)

seq1  TCAGTCATCCTCCAGTGCCCTTGCTGGGTGAGGAGACCTGAGGACACAGG  50
      |||||||| |||||| |||  |||| ||||||   ||||||||| ||  |
seq2  TCAGTCAT-CTCCAG-GCC--TGCT-GGTGAG--AACCTGAGGA-ACCAG  42

seq1  TCTTAAGACTCGAGTTCCTATCCAGGCTTGATTTTCTTCAAATCTTGGTA  100
      |||  |||||||||    | | || || |||||    ||||||||  |||
seq2  TCT--AGACTCGAG----TCTTCA-GCCTGATT---CTCAAATCT--GTA  80

seq1  AATATTTTACAAAATTTGAATTCTTTTTTTGCTCACTTTTTTTTTTAACT  150
      |||| ||||||||| ||||    | ||||||||||| |||||||||||||
seq2  AATA-TTTACAAAA-TTGA----TCTTTTTGCTCAC-TTTTTTTTTAACT  123

seq1  GCAATGTCTGTTTCTATGGAGGAATGTTTATTTATAGACTATTCCCTTAT  200
      || ||||||| ||||||||||||||||||||||||||||||||||  || 
seq2  GC-ATGTCTG-TTCTATGGAGGAATGTTTATTTATAGACTATTCC--TA-  168

seq1  TTTTGCGGACAACACAGATAGTACTTATCTTAAGATGTGCTTCTGACTTA  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTGCGGACAACACAGATAGTACTTATCTTAAGATGTGC-TCTGACTTA  217

seq1  GTTAATGACCCATGGATGCAATAAGATACCGAGAACTCATCAGCATAGTG  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TAATGACCCATGGATGCAATAAGATACCGAGAACTCATCAGCATAGTG  266

seq1  AGAGTTGATTGGGGGGGAATATAGGGTGCAGAGGATGAGTCCACAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGATTGGGGGGGAATATAGGGTGCAGAGGATGAGTCCACAAAGAT  316

seq1  CACAGTGTGTAATGCAACTGGAGACAGCAGACTTGGCACTGGAGTCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTGTAATGCAACTGGAGACAGCAGACTTGGCACTGGAGTCATAG  366

seq1  CTGAGAGAGCTTCTATCTTAAGCTAAGAAGAGGAGGCAGAGAAAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGCTTCTATCTTAAGCTAAGAAGAGGAGGCAGAGAAAGAAAAA  416

seq1  TACTGGGAATAGTACATACTTTTCAAACCAAAAGTGAGGTTTTCTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAATAGTACATACTTTTCAAACCAAAAGTGAGGTTTTCTTCATC  466

seq1  AAGGCCATAACTTGTAATCCTTCCCAACTATGTTCACAAACTGGAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATAACTTGTAATCCTTCCCAACTATGTTCACAAACTGGAAAAAG  516

seq1  GCATTTAAA-CATGTGTTTATGGTGGCCATTCTCAGGCAACCCTCCACAA  599
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAACCATGTGTTTATGGTGGCCATTCTCAGGCAACCCTCCACAA  566

seq1  TTGTGATTTGATGGAATAAAGTTTAATTTCATTTGAATTTAAACACCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTGATGGAATAAAGTTTAATTTCATTTGAATTTAAACACCAAA  616

seq1  AATAATGATAATGTTAAAACTACCAATATTGGACAAAATATAAAGTACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATAATGTTAAAACTACCAATATTGGACAAAATATAAAGTACTA  666

seq1  CTTTTAACAAATACTTGAAAGTTTTACATGTTAAAGTGAAGCAAAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACAAATACTTGAAAGTTTTACATGTTAAAGTGAAGCAAAAAAAA  716

seq1  AAAGTATCAGATTTTCTCTTAGTGAAGATTTAAAATGGATTTTTACAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCAGATTTTCTCTTAGTGAAGATTTAAAATGGATTTTTACAAAG  766

seq1  AAAAAAATCGTTGAAAATACACAATAGATTCTGAGGTGCTAAAAATTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCGTTGAAAATACACAATAGATTCTGAGGTGCTAAAAATTCTT  816

seq1  TCAAGGCTCTGAGACCACAGATGACTAATATGGCAGAAAGAATAACAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTCTGAGACCACAGATGACTAATATGGCAGAAAGAATAACAGTA  866

seq1  ATGAAGTGTTAAGAGACTTTTGTATCCTTGGCAATCATCTTGCTTTTGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGTTAAGAGACTTTTGTATCCTTGGCAATCATCTTGCTTTTGCC  916

seq1  TGATTTGGGAGCCTTGTAGACATCCCTGAGCTGTAGAGGAAATGATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGGAGCCTTGTAGACATCCCTGAGCTGTAGAGGAAATGATTTTT  966

seq1  GCATATCTCAAACACACTAGGGTAATGTAGATTCCAAACCTAGAAATGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCTCAAACACACTAGGGTAATGTAGATTCCAAACCTAGAAATGAG  1016

seq1  TTTCTGATCCCTAGGGTTTGAATTC  1074
      |||||||||||||||||||||||||
seq2  TTTCTGATCCCTAGGGTTTGAATTC  1041

seq1: chr18_87033390_87034529
seq2: B6Ng01-140D08.g_66_1177

seq1  GAATTCAATCATTCAAATATTTTTGTGTTAGCAAGAATTTCTATTAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCATTCAAATATTTTTGTGTTAGCAAGAATTTCTATTAGTCC  50

seq1  CTATTTATTTAGCTGTAGAGGAGTACTTAGTCATTTCTTCCCTCCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTTAGCTGTAGAGGAGTACTTAGTCATTTCTTCCCTCCATCAT  100

seq1  AAAAAGTTATATCACTCACTACCTTAACTAGATAAGACTATATTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTATATCACTCACTACCTTAACTAGATAAGACTATATTTCTCCT  150

seq1  GACTTTAGACCTTATGCCTTTGATTTCAGATTCTTAGTAACATACTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGACCTTATGCCTTTGATTTCAGATTCTTAGTAACATACTGGCT  200

seq1  TATTTAAGACAGTGAAAAGCATGCAGCTCTGCAGAATATCCAGTATTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGACAGTGAAAAGCATGCAGCTCTGCAGAATATCCAGTATTGTG  250

seq1  GAGATTCATCACATCTCTGAACTCAAGATGTAGAGAGAGGATATTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCATCACATCTCTGAACTCAAGATGTAGAGAGAGGATATTTACAG  300

seq1  GTTATCCTTTACTTGTGTAGTGAGATCCATTCAGGCTAACCTTCATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCTTTACTTGTGTAGTGAGATCCATTCAGGCTAACCTTCATAAAA  350

seq1  TGAGAAAAGGAAAAGTACAACCCTTATAAAAACATGTCTTGTAACTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGGAAAAGTACAACCCTTATAAAAACATGTCTTGTAACTGCAA  400

seq1  TATATTTTCAAGATATATTGATTTTTAACTCACCAGAGAACAACTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCAAGATATATTGATTTTTAACTCACCAGAGAACAACTGTTGA  450

seq1  TATTTTTTGAGTGTAAATAAATACAAGTAAATATTTTTTTTAAAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAGTGTAAATAAATACAAGTAAATATTTTTTTTAAAGAAATC  500

seq1  AACAATTTGTGACAAAAAAGGTTACTGGCAAGTGACTGCTTAATAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGTGACAAAAAAGGTTACTGGCAAGTGACTGCTTAATAGATGT  550

seq1  TGTCTCATTAAAATTTAAATTGACCATAGGCTAACTATGAAAATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATTAAAATTTAAATTGACCATAGGCTAACTATGAAAATTTTATT  600

seq1  TGTGGATCCTGTATTTCAAGGATCAAAAAAAGACATGACTCATGGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCCTGTATTTCAAGGATCAAAAAAAGACATGACTCATGGAATCT  650

seq1  TGAAGTGTCACATAACAGACTGATGATAACTTCTTTTATTATAATAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTCACATAACAGACTGATGATAACTTCTTTTATTATAATAAAAA  700

seq1  GTCAATGCTTCATTCTTCTACTCTGCTGATATGTAAGCATCAACTGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGCTTCATTCTTCTACTCTGCTGATATGTAAGCATCAACTGTGAG  750

seq1  TAAATTAACTCTCAGATTACACTACTGAGACCCTACGTATACAAATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTCTCAGATTACACTACTGAGACCCTACGTATACAAATCATC  800

seq1  ATAAATTGTAAGAGGTGTGGCATTTGTTTTTGCATTGTTTCTGGAAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGTAAGAGGTGTGGCATTTGTTTTTGCATTGTTTCTGGAAACAT  850

seq1  CTGACTGAATGTGTGAAGTTAAGGAATACATGTTTAGTGAATGACTTAGC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGACTGAATGTGTGAAGTTAAGGAATACATG-TTAGTGAATGACTTAGC  899

seq1  AACTAAACAAATAATTATATCTGCTAAGCTTCTGACTGAAGGCCTGGAGG  950
       ||| ||||||| |||||||||||| |||||||||||||||| |||||||
seq2  -ACT-AACAAAT-ATTATATCTGCT-AGCTTCTGACTGAAGG-CTGGAGG  944

seq1  GTTGTGTTTTCAGAGTTTTAACTAATCTGGGGAATTCACAGCTGTGCTAT  1000
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GTTGTGTTTTCAGAGTTTT-ACT-ATCTGGGGAATTCACAGCTGTGCTAT  992

seq1  AACATCCCATCCACTTGAGTATAAATGGAACGTGTACTACAATGTTTTGT  1050
       |||| |||| ||| ||||||| ||||||||||||||||| ||| |||||
seq2  -ACAT-CCAT-CAC-TGAGTAT-AATGGAACGTGTACTAC-ATG-TTTGT  1035

seq1  TATACAAGACTCCACCTTAGGTGACTTAAGATAATGGTTGTTTTGATCAC  1100
      ||||| ||||||   |||||||||||  |||| |||||   ||||||| |
seq2  TATAC-AGACTC--ACTTAGGTGACT--AGAT-ATGGT--GTTTGATC-C  1076

seq1  TTTGATCAAATTCACTACTATGCGTTGGGAACCAGTCATT  1140
      |||||||||||   |||||||||||  || ||||||||||
seq2  TTTGATCAAAT--CCTACTATGCGT--GGGACCAGTCATT  1112