BAC Information

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BAC

Clone NameB6Ng01-141A18
Chromosome18 (Build37)
Map Location 87,436,784 - 87,650,639
singlet/doubletdoublet
Overlap genePpia-ps18_1039.1
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A18.bB6Ng01-141A18.g
ACCDH939614DH939615
length9621,042
definitionDH939614|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A18, 5' end.DH939615|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,650,096 - 87,650,639)(87,436,784 - 87,437,831)
sequence
gaattcataccataacaatgaaaaaaatgggtaagaacaatgggggaaga
tgggaaatggtggagaaaggaaaaatgatctctagacaaaaaacaaaaaa
ggaaatatggcagcagaagcccttcacttctgacaataacattaagcaga
ctggataaaataatccaatcaaaatatgcatagtgactgattgaatacaa
taccagattcaattctgtcctgtctataggacattcacttcacatacaga
ttaaggtaaaggaaaaataaatatatcccacagataacctggcctgatcc
ggggctcaagtcccttccggcccactgcagcaccggggtccctggcccgc
ggagtctccagacacccgcaaggacccacacaggatctgccacaggatcc
taagacctctggtgagtggaacacaacttctgccaggaggcaggttcaag
caccagatatctgggcaccttccctgccagaggaaagcttgctgcagaga
gtactctgaccactgaaactaaggatagtgctagtctcccaggtctgctg
atagaggctaacataatcacctgaggaacaagctctaaccagagacaact
ataacaactagctccagagaataccagatggcgaaaggcaaacgaaagaa
tcctaataacagaaatcaagaccactcaccatcatcagaacgcagcactc
ccaccccacctagtcctgggcaccccaacacaaccgaaaatctagaccca
gatttaaaagcatatctcatgatgatggtagaggacatcaagaaggactt
taataactcacttaaagaaatacaggagaacactgctaaagagttataag
tccttaaagaaaacaggaaaacacaaccaaacagtagaagtccttataga
aaaacaggaaaacacatccaaacaggtgatggaaatgaacaaaccatact
agactaaaaagg
gaattccactcataatggaatataagttgccatctggaaaaaattctttc
ctccacaaaataattttttccacagaattttattacagcaataaaatagc
aaatcaaaacttgtgtgtttgtctatatgtatatgcatgtgtgattgtct
tcccagatatgcgcatggttttactgtgcattcctattaatgtagtttta
tttattataaaagatgaataacaagtattagtaatatatgtgtactttaa
aatcatcttcttggaagatgtgtgatgataagatgctaaaacaatgtgaa
ttaaacaatacaatcattttgctgtgatattatgtaaaatgtatttgaat
aaaactgttgattgtcgagttagccgtggacaaatacattaacatagata
gactatgtaaagtagtatcagccttcatgaaatggtagattttggttcag
aagacattgctaggaaaaaaaatgttgttaaaacacagggaatgtaccta
aataggagaaggggcctaataaaatactgaagccagcctttatttataat
cattcgatcctgaaaggacacagctgtttttgctttctttgtggtattgt
ttttatattttctggatgttcagttcattgtgcatttcagggaattatct
ggacaatccaaaaatgactaccagtccatgcattagagctgatatgagta
gtgagcacacactgttggcactgggccaaagaccctttaacatttaaggc
tgaaagataccaggatggcacaaaatttaagttttgctactcaaatgttg
cataactcaaaactcatgaaatatttcttaaaattttcttttagtatttt
tcctagtaatagtcaactatagtaatgaaatcacgataaatcaaactcca
gaggaatagaaactttttctattacttctttgtctctgggtagagaaaat
atttcagacacttctcacagaacagtggactgcatatgaggacccttttc
tcgataacttctataaactagattacttccaaaggtctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87650096_87650639
seq2: B6Ng01-141A18.b_49_592 (reverse)

seq1  ACCTGGGAGACTAGCACTATCCTTAGTTTCAGTGGTCAGAGTACTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGACTAGCACTATCCTTAGTTTCAGTGGTCAGAGTACTCTCTG  50

seq1  CAGCAAGCTTTCCTCTGGCAGGGAAGGTGCCCAGATATCTGGTGCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCTTTCCTCTGGCAGGGAAGGTGCCCAGATATCTGGTGCTTGAA  100

seq1  CCTGCCTCCTGGCAGAAGTTGTGTTCCACTCACCAGAGGTCTTAGGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCTGGCAGAAGTTGTGTTCCACTCACCAGAGGTCTTAGGATCC  150

seq1  TGTGGCAGATCCTGTGTGGGTCCTTGCGGGTGTCTGGAGACTCCGCGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGATCCTGTGTGGGTCCTTGCGGGTGTCTGGAGACTCCGCGGGC  200

seq1  CAGGGACCCCGGTGCTGCAGTGGGCCGGAAGGGACTTGAGCCCCGGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCCCGGTGCTGCAGTGGGCCGGAAGGGACTTGAGCCCCGGATCA  250

seq1  GGCCAGGTTATCTGTGGGATATATTTATTTTTCCTTTACCTTAATCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTATCTGTGGGATATATTTATTTTTCCTTTACCTTAATCTGTA  300

seq1  TGTGAAGTGAATGTCCTATAGACAGGACAGAATTGAATCTGGTATTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTGAATGTCCTATAGACAGGACAGAATTGAATCTGGTATTGTAT  350

seq1  TCAATCAGTCACTATGCATATTTTGATTGGATTATTTTATCCAGTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAGTCACTATGCATATTTTGATTGGATTATTTTATCCAGTCTGCT  400

seq1  TAATGTTATTGTCAGAAGTGAAGGGCTTCTGCTGCCATATTTCCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTATTGTCAGAAGTGAAGGGCTTCTGCTGCCATATTTCCTTTTTT  450

seq1  GTTTTTTGTCTAGAGATCATTTTTCCTTTCTCCACCATTTCCCATCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTCTAGAGATCATTTTTCCTTTCTCCACCATTTCCCATCTTCC  500

seq1  CCCATTGTTCTTACCCATTTTTTTCATTGTTATGGTATGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTTCTTACCCATTTTTTTCATTGTTATGGTATGAATTC  544

seq1: chr18_87436784_87437831
seq2: B6Ng01-141A18.g_66_1107

seq1  GAATTCCACTCATAATGGAATATAAGTTGCCATCTGGAAAAAATTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCATAATGGAATATAAGTTGCCATCTGGAAAAAATTCTTTC  50

seq1  CTCCACAAAATAATTTTTTCCACAGAATTTTATTACAGCAATAAAATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAAAATAATTTTTTCCACAGAATTTTATTACAGCAATAAAATAGC  100

seq1  AAATCAAAACTTGTGTGTTTGTCTATATGTATATGCATGTGTGATTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAACTTGTGTGTTTGTCTATATGTATATGCATGTGTGATTGTCT  150

seq1  TCCCAGATATGCGCATGGTTTTACTGTGCATTCCTATTAATGTAGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATATGCGCATGGTTTTACTGTGCATTCCTATTAATGTAGTTTTA  200

seq1  TTTATTATAAAAGATGAATAACAAGTATTAGTAATATATGTGTACTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAAAAGATGAATAACAAGTATTAGTAATATATGTGTACTTTAA  250

seq1  AATCATCTTCTTGGAAGATGTGTGATGATAAGATGCTAAAACAATGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTTCTTGGAAGATGTGTGATGATAAGATGCTAAAACAATGTGAA  300

seq1  TTAAACAATACAATCATTTTGCTGTGATATTATGTAAAATGTATTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATACAATCATTTTGCTGTGATATTATGTAAAATGTATTTGAAT  350

seq1  AAAACTGTTGATTGTCGAGTTAGCCGTGGACAAATACATTAACATAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTGATTGTCGAGTTAGCCGTGGACAAATACATTAACATAGATA  400

seq1  GACTATGTAAAGTAGTATCAGCCTTCATGAAATGGTAGATTTTGGTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTAAAGTAGTATCAGCCTTCATGAAATGGTAGATTTTGGTTCAG  450

seq1  AAGACATTGCTAGGAAAAAAAATGTTGTTAAAACACAGGGAATGTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTGCTAGGAAAAAAAATGTTGTTAAAACACAGGGAATGTACCTA  500

seq1  AATAGGAGAAGGGGCCTAATAAAATACTGAAGCCAGCCTTTATTTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGAAGGGGCCTAATAAAATACTGAAGCCAGCCTTTATTTATAAT  550

seq1  CATTCGATCCTGAAAGGACACAGCTGTTTTTGCTTTCTTTGTGGTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGATCCTGAAAGGACACAGCTGTTTTTGCTTTCTTTGTGGTATTGT  600

seq1  TTTTATATTTTCTGGATGTTCAGTTCATTGTGCATTTCAGGGAATTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTTCTGGATGTTCAGTTCATTGTGCATTTCAGGGAATTATCT  650

seq1  GGACAATCCAAAAATGACCACCAGTCCATGCATTAGAGCTGATATGAGTA  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGACAATCCAAAAATGACTACCAGTCCATGCATTAGAGCTGATATGAGTA  700

seq1  GTGAGCACACACTGTTGGCACTGGGCCAAAGACCCTTTAACATTTAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACACACTGTTGGCACTGGGCCAAAGACCCTTTAACATTTAAGGC  750

seq1  TGAAAGATACCAGGATGGCACAAAATTTAAGTTTTGCTACTCAAATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATACCAGGATGGCACAAAATTTAAGTTTTGCTACTCAAATGTTG  800

seq1  CATAACTCAAAACTCATGAAATATTTCTTAAAATTTCCTTTTAGTA-TTT  849
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CATAACTCAAAACTCATGAAATATTTCTTAAAATTTTCTTTTAGTATTTT  850

seq1  TCCCAGTAATAGTCAACTATAGTAATGAAAATCACGATAAACAAAACTCC  899
      ||| ||||||||||||||||||||||| |||||||||||||  |||||||
seq2  TCCTAGTAATAGTCAACTATAGTAATG-AAATCACGATAAATCAAACTCC  899

seq1  AGAGGAATAGAAAC-TTTTCTATTACTTCTTTGTCCCTGGGTAGAGAAAA  948
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  AGAGGAATAGAAACTTTTTCTATTACTTCTTTGTCTCTGGGTAGAGAAAA  949

seq1  ATTATTCCAGACACTTCTCACAAGAACAGT-GACTGCATTATGAGGACCC  997
        |||| |||||||||||||| |||||||| ||||||| |||||||||||
seq2  --TATTTCAGACACTTCTCAC-AGAACAGTGGACTGCA-TATGAGGACCC  995

seq1  TTTACCCAGATAAACTTCTATAAACTAGATTACCTTCCAAAGGTCCTATC  1047
      ||| | | ||| |||||||||||||||||||| ||||||||||| |||||
seq2  TTTTCTC-GAT-AACTTCTATAAACTAGATTA-CTTCCAAAGGT-CTATC  1041

seq1  A  1048
      |
seq2  A  1042