BAC Information

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BAC

Clone NameB6Ng01-144A13
Chromosome18 (Build37)
Map Location 50,400,130 - 50,613,702
singlet/doubletdoublet
Overlap geneGm93
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144A13.bB6Ng01-144A13.g
ACCDH941816DH941817
length1,164976
definitionDH941816|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A13, 5' end.DH941817|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,612,532 - 50,613,702)(50,400,130 - 50,401,119)
sequence
gaattctctgtttatctctgtaccccattttaatagggttatttggtgtt
caaataattcttatatatatcattctaaggaaggatcaaaccatcactga
catcactttcctaaaacttgggataagctagcattgaccaaggagacaga
gcacatccattttgaaactttacatgccatctagaaacaccttcataata
atcaactcaactatctatatccaatgctcttccaccctgatgaggatgta
cagactataggtaaacacttcttggccactgtgaacatctctgtacagta
atcatagaatgtgtccattctctctgggattctttggaatatacaaatca
tactcagtggttataatttgcaaacaaaggttaaagatgaaccgattaac
atttagaatactaattgtaggagaaagtcttttcaataaatccaagtgtt
tgtttaatttacttggtgatttgtatgcactgcctactgtgtttaatacc
ctcctggacagaagacactacagggaggccctttggttcattccttcaga
ttgcagaaaagcccttattcatgcattgaagggtctgataaacactatgc
atctacatgtattctgaagtgctttgtcccaaactctacaagcaacattt
attccagtgaaattctgaaggaaatgtcatgaaaataaactatctctgac
atttcacatactgatctgtcaatggctttgcaattgagaaaaatgaggtt
tgaagggaagaaatggaagaagttgaagcagatgattgggatccagaaac
aagagaaagataaagcagcgacaagttagagtgatggaaggccagagtcc
aagagatgagctagacaatcaaagattgatgatcagaaaggaatatttgc
tgccaaatctttcatcgggatccaatttcatttttcatttaggataaata
aaaaaataaccaaatgtctgtgacatttcctgtccactagatgctggatg
aaatgctttttcttttcttctactgccacaccccttatgctataccagca
gtgagtagcactgagtggatgaaccctagacagtgggtatgtgggtttca
ccctgaagtgtccttcactggtcctgtaattaggaaataaagccccttct
gcttccattctctc
gaattcctttgttaatttctgcccactgtgaaaacatcaagtaataaaca
agatgggcagggagaagaggggagcgatggagggaatacagggatggaca
ggtaatactaagtgccatatggaaaatgggttataaaactcatataaaac
tatgggttgtatggaaactgtctttcaccttgttaggcacagatcacttt
cagaatggactgggaaatttttttgaattgtaataaaaactgaagaaaat
gtaattatagtttatttaagatgtatttcaatgtttgaatagattctcaa
gggtattatgcagatgtagtatttgacacattacttcaagacatttgggg
tagttataaaggatgatattattattatttgtaataacaatatcagtgtg
attttacacaaaatgcaggcaatctttaatgggttggccagtctcaagtg
ttgaatgatgctgctgaaattatgctcatgaaaaacaatgtcagccatgg
tagcttgttttcccttatagataatttgtatgtgtgttacctctgtgaag
tcctcactctctagttttactattgggttgaagtgttttcagtacttacc
ctttatcatggagtctgtctcttctatgacatctgttttgatcttctcta
gttgtcagagatgtctctgtctctagatttttgatcttgggaaagtgtgt
atctgtcttatgacaacagttttctgcctggtttataatatttgtattct
tgtcaaaactattctgcaagctaggcatggtggcacacgcctttaatccc
agcactcgggaggcagaggaggggatttctgagttcgaggccagcctggt
ctacagagtgattccaggaccgccagggatatacagagaaaccctgtctc
gaaaacaacaaacaaagcaaacaaacaacaaacaaaccaaaaagactact
ttgcaacccccatcatgttggactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50612532_50613702
seq2: B6Ng01-144A13.b_46_1209 (reverse)

seq1  GAGAGAATGGGAGACAGAAGAGGCTTTATGTCCTAAATTACAGGACCAGT  50
      |||||||||| || |||||| |||||||| |||| |||||||||||||||
seq2  GAGAGAATGGAAG-CAGAAGGGGCTTTATTTCCT-AATTACAGGACCAGT  48

seq1  GAGTGACACTTCAGGGGTGTAACCCACATTACCACTGTCTAGGGTTCATC  100
      ||  ||||||||| ||||| |||||||||  |||||||||||||||||||
seq2  GAAGGACACTTCA-GGGTGAAACCCACATACCCACTGTCTAGGGTTCATC  97

seq1  TACTTCAGTGCTTAACTCACTGCTTGGTATAGCAT-AGGGGTGTGGCAGT  149
       || ||||||||  ||||||||| ||||||||||| ||||||||||||||
seq2  CAC-TCAGTGCT--ACTCACTGC-TGGTATAGCATAAGGGGTGTGGCAGT  143

seq1  AGAAGAAAAGAAAAAGCATTTCATCCAGCATCTAGTGGACAGGAAATTGT  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAAGAAAAGAAAAAGCATTTCATCCAGCATCTAGTGGACAGGAAA-TGT  192

seq1  CACAGACATTTGGTTATTTTTTTATTTATCCTAAATGAAAAATGAAATTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACATTTGGTTATTTTTTTATTTATCCTAAATGAAAAATGAAATTG  242

seq1  GATCCCGATGAAAGATTTGGCAGCAAATATTCCTTTCTGATCATCAATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCGATGAAAGATTTGGCAGCAAATATTCCTTTCTGATCATCAATCT  292

seq1  TTGATTGTCTAGCTCATCTCTTGGACTCTGGCCTTCCATCACTCTAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTCTAGCTCATCTCTTGGACTCTGGCCTTCCATCACTCTAACTT  342

seq1  GTCGCTGCTTTATCTTTCTCTTGTTTCTGGATCCCAATCATCTGCTTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGCTTTATCTTTCTCTTGTTTCTGGATCCCAATCATCTGCTTCAA  392

seq1  CTTCTTCCATTTCTTCCCTTCAAACCTCATTTTTCTCAATTGCAAAGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCATTTCTTCCCTTCAAACCTCATTTTTCTCAATTGCAAAGCCA  442

seq1  TTGACAGATCAGTATGTGAAATGTCAGAGATAGTTTATTTTCATGACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGATCAGTATGTGAAATGTCAGAGATAGTTTATTTTCATGACATT  492

seq1  TCCTTCAGAATTTCACTGGAATAAATGTTGCTTGTAGAGTTTGGGACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGAATTTCACTGGAATAAATGTTGCTTGTAGAGTTTGGGACAAA  542

seq1  GCACTTCAGAATACATGTAGATGCATAGTGTTTATCAGACCCTTCAATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCAGAATACATGTAGATGCATAGTGTTTATCAGACCCTTCAATGC  592

seq1  ATGAATAAGGGCTTTTCTGCAATCTGAAGGAATGAACCAAAGGGCCTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAGGGCTTTTCTGCAATCTGAAGGAATGAACCAAAGGGCCTCCC  642

seq1  TGTAGTGTCTTCTGTCCAGGAGGGTATTAAACACAGTAGGCAGTGCATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTCTTCTGTCCAGGAGGGTATTAAACACAGTAGGCAGTGCATAC  692

seq1  AAATCACCAAGTAAATTAAACAAACACTTGGATTTATTGAAAAGACTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCAAGTAAATTAAACAAACACTTGGATTTATTGAAAAGACTTTC  742

seq1  TCCTACAATTAGTATTCTAAATGTTAATCGGTTCATCTTTAACCTTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAATTAGTATTCTAAATGTTAATCGGTTCATCTTTAACCTTTGTT  792

seq1  TGCAAATTATAACCACTGAGTATGATTTGTATATTCCAAAGAATCCCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTATAACCACTGAGTATGATTTGTATATTCCAAAGAATCCCAGA  842

seq1  GAGAATGGACACATTCTATGATTACTGTACAGAGATGTTCACAGTGGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGACACATTCTATGATTACTGTACAGAGATGTTCACAGTGGCCA  892

seq1  AGAAGTGTTTACCTATAGTCTGTACATCCTCATCAGGGTGGAAGAGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTTTACCTATAGTCTGTACATCCTCATCAGGGTGGAAGAGCATT  942

seq1  GGATATAGATAGTTGAGTTGATTATTATGAAGGTGTTTCTAGATGGCATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGATAGTTGAGTTGATTATTATGAAGGTGTTTCTAGATGGCATG  992

seq1  TAAAGTTTCAAAATGGATGTGCTCTGTCTCCTTGGTCAATGCTAGCTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTCAAAATGGATGTGCTCTGTCTCCTTGGTCAATGCTAGCTTAT  1042

seq1  CCCAAGTTTTAGGAAAGTGATGTCAGTGATGGTTTGATCCTTCCTTAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTTTAGGAAAGTGATGTCAGTGATGGTTTGATCCTTCCTTAGAA  1092

seq1  TGATATATATAAGAATTATTTGAACACCAAATAACCCTATTAAAATGGGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATATAAGAATTATTTGAACACCAAATAACCCTATTAAAATGGGG  1142

seq1  TACAGAGATAAACAGAGAATTC  1171
      ||||||||||||||||||||||
seq2  TACAGAGATAAACAGAGAATTC  1164

seq1: chr18_50400130_50401119
seq2: B6Ng01-144A13.g_67_1042

seq1  GAATTCCTTTGTTAATTTCTGCCCACTGTGAAAACATCAAGTAATAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTTAATTTCTGCCCACTGTGAAAACATCAAGTAATAAACA  50

seq1  AGATGGGCAGGGAGAAGAGGGGAGCGATGGAGGGAATACAGGGATGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCAGGGAGAAGAGGGGAGCGATGGAGGGAATACAGGGATGGACA  100

seq1  GGTAATACTAAGTGCCATATGGAAAATGGGTTATAAAACTCATATAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATACTAAGTGCCATATGGAAAATGGGTTATAAAACTCATATAAAAC  150

seq1  TATGGGTTGTATGGAAACTGTCTTTCACCTTGTTAGGCACAGATCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTGTATGGAAACTGTCTTTCACCTTGTTAGGCACAGATCACTTT  200

seq1  CAGAATGGACTGGGAAATTTTTTTGAATTGTAATAAAAACTGAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGACTGGGAAATTTTTTTGAATTGTAATAAAAACTGAAGAAAAT  250

seq1  GTAATTATAGTTTATTTAAGATGTATTTCAATGTTTGAATAGATTCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATAGTTTATTTAAGATGTATTTCAATGTTTGAATAGATTCTCAA  300

seq1  GGGTATTATGCAGATGTAGTATTTGACACATTACTTCAAGACATTTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTATGCAGATGTAGTATTTGACACATTACTTCAAGACATTTGGGG  350

seq1  TAGTTATAAAGGATGATATTATTATTATTTGTAATAACAATATCAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAAAGGATGATATTATTATTATTTGTAATAACAATATCAGTGTG  400

seq1  ATTTTACACAAAATGCAGGCAATCTTTAATGGGTTGGCCAGTCTCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACACAAAATGCAGGCAATCTTTAATGGGTTGGCCAGTCTCAAGTG  450

seq1  TTGAATGATGCTGCTGAAATTATGCTCATGAAAAACAATGTCAGCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGATGCTGCTGAAATTATGCTCATGAAAAACAATGTCAGCCATGG  500

seq1  TAGCTTGTTTTCCCTTATAGATAATTTGTATGTGTGTTACCTCTGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTTTTCCCTTATAGATAATTTGTATGTGTGTTACCTCTGTGAAG  550

seq1  TCCTCACTCTCTAGTTTTACTATTGGGTTGAAGTGTTTTCAGTACTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTCTCTAGTTTTACTATTGGGTTGAAGTGTTTTCAGTACTTACC  600

seq1  CTTTATCATGGAGTCTGTCTCTTCTATGACATCTGTTTTGATCTTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCATGGAGTCTGTCTCTTCTATGACATCTGTTTTGATCTTCTCTA  650

seq1  GTTGTCAGAGATGTCTCTGTCTCTAGATTTTTGATCTTGGGAAAGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGAGATGTCTCTGTCTCTAGATTTTTGATCTTGGGAAAGTGTGT  700

seq1  ATCTGTCTTATGACAACAGTTTTCTGCCTGGTTTATAATATTTGTATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTATGACAACAGTTTTCTGCCTGGTTTATAATATTTGTATTCT  750

seq1  TGTCAAAACTATTCTGCAAGCTAGGCATGGTGGCACACGCCTTTAATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAACTATTCTGCAAGCTAGGCATGGTGGCACACGCCTTTAATCCC  800

seq1  AGCACTCGGGAGGCAGAGGAGGGGGATTTCTGAGTTCGAGGCCAGCCTGG  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCACTCGGGAGGCAGAGGA-GGGGATTTCTGAGTTCGAGGCCAGCCTGG  849

seq1  TCTACAGAGTGAATTCCAGGACCGCCAGGGATATACAGAGAAACCCTGTC  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTG-ATTCCAGGACCGCCAGGGATATACAGAGAAACCCTGTC  898

seq1  TCGAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACA  950
      ||| |||||||    ||||||| | ||||||   | ||||||   |||| 
seq2  TCG-AAAACAA---CAAACAAAGC-AAACAA---ACAACAAA--CAAACC  938

seq1  AAAAAGACTACTTTGCAAACCCACAACCATGTTGGACTTA  990
      ||||||||||||||||||  || | | |||||||||||||
seq2  AAAAAGACTACTTTGCAA--CCCCCATCATGTTGGACTTA  976