BAC Information

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BAC

Clone NameB6Ng01-145I17
Chromosome18 (Build37)17 (Build37)
Map Location 47,231,395 - 47,232,16979,683,230 - 79,683,419
singlet/doubletsingletsinglet
Overlap geneCommd10
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241
Downstream geneEG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145I17.bB6Ng01-145I17.g
ACCDH942921DH942922
length777380
definitionDH942921|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I17, 5' end.DH942922|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,231,395 - 47,232,169)(79,683,230 - 79,683,419)
sequence
gaattcaccttactttttaatagcagttttatagaaattctcatgtgtta
ttcaactcattcattcagagtgagtaattcagtcacaaggctatgtttca
cagttaattctagaatattctcgccacctcaaagcaactccagacctctt
gccactgcctgctagcactgttaattactctgctctccaccttcaagccc
tgggcaggagtaatctagtcttcattgattcgcctattctgaaaacaata
taaaaatttaatacaatcatgtattttatgactaatttttatctactgtg
tttctatgacatagccacataggatgtaatgctaagcaaaaaaagtccaa
tcaagtaaatgaaattgttggaattggattataattccaatttaatattt
cacgtatgatataaacatatacctaaacacagtacagaacaaaaatgctg
acacagttttattttctttgacaattaaaataaaatatgtaatagcacat
gaacatgactcacaaacacattttatttatttttaaaaataatgttaaga
agtatttttcctcctcctggaaacctgttactcatctttcagactctaga
aatgtcacctcctctgtgaaaccttctttgagtcttcccaactcccacca
ccctagatgcctgcttagttcctcgcacacagtgagagttctgtgagttc
ttgttgtaatgtgctacgatggaaactttgacatcaagggaagtatcatt
ctcatattcatatataataatgtgtgt
tagtctcttggctgcctgcggaagagagtttccgtttcctcttggctgtc
ttcctatcaagatgtagaattcttggtttatccagcaccaagtctgcctg
taggctgccacgcttcctaccatgatagtaatggactgaacatctggaac
tgtcagccagccccaattaaatgctgtcctttataagagttgccttggtc
atagtgtctcttcatagcaatgaagccctcactaagacaacagctttcta
acattttgaggtgacattcctccccggtttagtttcacatattcttgtta
cgtgatgctgaacacttttgccatgcctgttggtaggttctgtttttttt
tttgttttgttttgttttgttttgtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47231395_47232169
seq2: B6Ng01-145I17.b_44_820 (reverse)

seq1  ACACACAT--ATATATATGAATATGAGAATGATACTTCCCTTGATGTCAA  48
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTATTATATATGAATATGAGAATGATACTTCCCTTGATGTCAA  50

seq1  AGTTTCCATCGTAGCACATTACAACAAGAACTCACAGAACTCTCACTGTG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATCGTAGCACATTACAACAAGAACTCACAGAACTCTCACTGTG  100

seq1  TGCGAGGAACTAAGCAGGCATCTAGGGTGGTGGGAGTTGGGAAGACTCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGAACTAAGCAGGCATCTAGGGTGGTGGGAGTTGGGAAGACTCAA  150

seq1  AGAAGGTTTCACAGAGGAGGTGACATTTCTAGAGTCTGAAAGATGAGTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTTCACAGAGGAGGTGACATTTCTAGAGTCTGAAAGATGAGTAA  200

seq1  CAGGTTTCCAGGAGGAGGAAAAATACTTCTTAACATTATTTTTAAAAATA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCCAGGAGGAGGAAAAATACTTCTTAACATTATTTTTAAAAATA  250

seq1  AATAAAATGTGTTTGTGAGTCATGTTCATGTGCTATTACATATTTTATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTGTTTGTGAGTCATGTTCATGTGCTATTACATATTTTATTT  300

seq1  TAATTGTCAAAGAAAATAAAACTGTGTCAGCATTTTTGTTCTGTACTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCAAAGAAAATAAAACTGTGTCAGCATTTTTGTTCTGTACTGTG  350

seq1  TTTAGGTATATGTTTATATCATACGTGAAATATTAAATTGGAATTATAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATATGTTTATATCATACGTGAAATATTAAATTGGAATTATAAT  400

seq1  CCAATTCCAACAATTTCATTTACTTGATTGGACTTTTTTTGCTTAGCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCAACAATTTCATTTACTTGATTGGACTTTTTTTGCTTAGCATT  450

seq1  ACATCCTATGTGGCTATGTCATAGAAACACAGTAGATAAAAATTAGTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTATGTGGCTATGTCATAGAAACACAGTAGATAAAAATTAGTCAT  500

seq1  AAAATACATGATTGTATTAAATTTTTATATTGTTTTCAGAATAGGCGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATGATTGTATTAAATTTTTATATTGTTTTCAGAATAGGCGAAT  550

seq1  CAATGAAGACTAGATTACTCCTGCCCAGGGCTTGAAGGTGGAGAGCAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGACTAGATTACTCCTGCCCAGGGCTTGAAGGTGGAGAGCAGAG  600

seq1  TAATTAACAGTGCTAGCAGGCAGTGGCAAGAGGTCTGGAGTTGCTTTGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAGTGCTAGCAGGCAGTGGCAAGAGGTCTGGAGTTGCTTTGAG  650

seq1  GTGGCGAGAATATTCTAGAATTAACTGTGAAACATAGCCTTGTGACTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGAGAATATTCTAGAATTAACTGTGAAACATAGCCTTGTGACTGAA  700

seq1  TTACTCACTCTGAATGAATGAGTTGAATAACACATGAGAATTTCTATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCACTCTGAATGAATGAGTTGAATAACACATGAGAATTTCTATAAA  750

seq1  ACTGCTATTAAAAAGTAAGGTGAATTC  775
      |||||||||||||||||||||||||||
seq2  ACTGCTATTAAAAAGTAAGGTGAATTC  777

seq1: chr17_79683230_79683419
seq2: B6Ng01-145I17.g_232_454 (reverse)

seq1  AAAAAACAAAACAAAACAAAAC---CCCAAAAAACAAGCA-AGCAAACAA  46
      ||||||||||||||||||||||    | |||||| || || | |  || |
seq2  AAAAAACAAAACAAAACAAAACAAAACAAAAAAAAAAACAGAACCTACCA  50

seq1  ACAAACA----AAAA------------AC--AAAAAAAATCTTTAAAAAA  78
      |||  ||    ||||            ||  || || ||| | | |||  
seq2  ACAGGCATGGCAAAAGTGTTCAGCATCACGTAACAAGAATATGTGAAACT  100

seq1  TAGCTTTGTTTTTATTACA----TATATTTAAGATAG-------CTTACT  117
       | |   |     ||  ||     | || | ||| ||       |||| |
seq2  AAACCGGGGAGGAATGTCACCTCAAAATGTTAGAAAGCTGTTGTCTTAGT  150

seq1  AAGGGTTTTATTACTATGAAGAGATACCATGACCAAGGCAACTCTTATAA  167
       |||| || ||| ||||||||||| || ||||||||||||||||||||||
seq2  GAGGGCTTCATTGCTATGAAGAGACACTATGACCAAGGCAACTCTTATAA  200

seq1  AGGACAATGTTTCATTGGGGCTG  190
      ||||||   ||| ||||||||||
seq2  AGGACAGCATTTAATTGGGGCTG  223