BAC Information

Click to search

BAC

Clone NameB6Ng01-146F06
Chromosome18 (Build37)
Map Location 52,845,804 - 53,006,434
singlet/doubletdoublet
Overlap geneGykl1, Sncaip, A730036E13Rik
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F06.bB6Ng01-146F06.g
ACCDH943500DH943501
length1,135938
definitionDH943500|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F06, 5' end.DH943501|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,005,280 - 53,006,434)(52,845,804 - 52,846,737)
sequence
gaattcttctgagtagcccatggctttagtagccatgataaccacagtta
atatttatataaaagtaatattaggaaaacctttattataaatctagcaa
agcagtcacagcccattcaaaagagcaaaattctcactttatcaacatga
ctgctggcagttgtccttttgtgtaagggacagagatgtagagccagagg
atctggatttatgccatggctcccatgtttattatctctatggttctgga
caaataaattgttttgtatctcaagagctaggtttccttatctgtaggac
acaggtacctacatgagataacgaagctggagttattttgaaaaatgata
aatgattgtaaaatgtctcatctttctagcatttttttttgtgagacttt
ccttcctcttctttattactgccaggactctaaattcaggagaacaagag
aggtgcaggaatgagatggggctggaaactcaaaggactttgcatcagcc
tacttctctaccttatgggactcctcttaactctttccttgctcaacaga
gtttgaagataagggtggacactgaaagtttgcttctcaaactgccgttg
tgtggtgacagacaaccctatacggccacaatgtcagtttatccctttgc
catatagaacagtttgaacatgcatagggtccagaaagacagaatatgac
ttctacattgctccatgggaatctctgaccaccctagctattgtttagga
ctgaaaaacgttggcctttttagtcctgcaaactgaagccagttaggtga
gcaagcagacatcactcaagtggtaatgagccaccaaaaagaaaacatgt
cccaagcacattttcaagctagagatttttaaatacaaagttctgttacg
tttcaggacggggatgggaaatgagttgttcatttaaactatcacagatt
tatggcttctcagagcatcccaaattcatgcaggtacttcaagcagctca
ggcagacccagcttctacataagcaagcgcttgcaaagcagccacaagct
aaatagagatttttggagcttaaactgttttctttttttgtaatgtgtct
gtttcaatgctgcctaccaatggaaaagcatgtct
gaattcactgaccatgccaagtctgaatagtttctgatggatgaaacagt
tcattattcctcaaaagctttatagcattcctccaaaagacctttaaact
tatttgtctatgtacaggaatgcctgctgtgtgggaagagtctccagtgt
aaacaacgaaagcaatttaggatttatatttttaaaaacttcagaccata
atcttcctctatgactaaagttctcttttattccaaattttaaaactact
gtttgcttttagtatagataaaaatacaagaacaagtgtgagccccattc
ataatccatgttatccttgaaggggctgtgtgtgaggaaaggcttttcct
tgcccctttcccttacaattcatggcatgtctgacttcttgatttttggc
tcttctctggactatgaaaataagtaagtagctgtgtactaagcagagat
caagtatcctttgaaagggttatttggcttttacatgatctaactgacag
aaaatgaaaataaaaataaatcatttaacttgttccaaatgacagtgtgt
gacaggagagaatcacatatgcctatatatttattcatctagttctgttt
tctgcatcaacccttagttgtcatcagacaagccaatagccactagtaga
agaggtagttgacctctgtcttctttatcttctggtcgtttggctctagg
tctttcttcaaatcttaatcccatcatcctgtcaatctcatatgcgagtc
atgagaaacactgaaggacatttgggtatttatttatgtgcatgaccaat
tgacataataaaagccccttgattttccagacatgacactgagataattt
tcccatatgtctcatgtttctgtacatcttacaaataacagacctactgc
tctactttccagaatcatgtttttgaggatggttgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53005280_53006434
seq2: B6Ng01-146F06.b_44_1178 (reverse)

seq1  AGACATGCTTCTCCATTGGTAGGCAGGCCTTTGAACAGGACAACATTTTA  50
      |||||||||| |||||||||||||| || ||  |||||    |||  |||
seq2  AGACATGCTTTTCCATTGGTAGGCA-GCATTGAAACAG----ACACATTA  45

seq1  C-AAAAAAGAAAACAGTGTTAAGCTCAAAAAATCTCTCTTTAGCTCTGTG  99
      | ||||||||||||||| |||||||| |||||||||| ||||||| ||||
seq2  CAAAAAAAGAAAACAGT-TTAAGCTCCAAAAATCTCTATTTAGCT-TGTG  93

seq1  GCTGCTTTTGCAAGCGCTTTGCTTATGTAGAAGGCTGTGGTTCTGCCCTG  149
      ||||| ||||||||||| |||||||||||||||    ||| |||| ||||
seq2  GCTGC-TTTGCAAGCGC-TTGCTTATGTAGAAG---CTGGGTCTG-CCTG  137

seq1  TGGCTGCCTGAAGTACCTGCCTGAATTCTGGGATGCTCTGAGAAGCCATA  199
        ||||| |||||||||||| |||||| ||||||||||||||||||||||
seq2  -AGCTGCTTGAAGTACCTGCATGAATT-TGGGATGCTCTGAGAAGCCATA  185

seq1  AATCTTGTGATAGTTTAAATGGACCACTCATTTCCCATCCCCGTCCCTGG  249
      |||| |||||||||||||||| || |||||||||||||||||||||   |
seq2  AATC-TGTGATAGTTTAAATGAACAACTCATTTCCCATCCCCGTCC--TG  232

seq1  AAACGTAACAGAACCTTTGTTATTTAAAAATCTCTAGCTTGAAAATGTGC  299
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  AAACGTAACAGAA-CTTTG-TATTTAAAAATCTCTAGCTTGAAAATGTGC  280

seq1  TTGGGACATGTTTTTCTTTTTGGTGGCTCATTACCACTTGAGTGATGTCT  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACATG-TTTTCTTTTTGGTGGCTCATTACCACTTGAGTGATGTCT  329

seq1  GCTTGCTCACCTAACTGGCTTCAGTTTGCAGGACTAAAAAGGCCAACGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCACCTAACTGGCTTCAGTTTGCAGGACTAAAAAGGCCAACGTT  379

seq1  TTTCAGTCCTGAACAATAGCTAGGGTGGTCAGAGATTCCCATGGAGCAAT  449
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCCTAAACAATAGCTAGGGTGGTCAGAGATTCCCATGGAGCAAT  429

seq1  GTAGAAGTCATATTCTGTCTTTCTGGACCCTATGCATGTTCAAACTGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTCATATTCTGTCTTTCTGGACCCTATGCATGTTCAAACTGTTC  479

seq1  TATATGGCAAAGGGATAAACTGACATTGTGGCCGTATAGGGTTGTCTGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCAAAGGGATAAACTGACATTGTGGCCGTATAGGGTTGTCTGTC  529

seq1  ACCACACAACGGCAGTTTGAGAAGCAAACTTTCAGTGTCCACCCTTATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAACGGCAGTTTGAGAAGCAAACTTTCAGTGTCCACCCTTATCT  579

seq1  TCAAACTCTGTTGAGCAAGGAAAGAGTTAAGAGGAGTCCCATAAGGTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCTGTTGAGCAAGGAAAGAGTTAAGAGGAGTCCCATAAGGTAGA  629

seq1  GAAGTAGGCTGATGCAAAGTCCTTTGAGTTTCCAGCCCCATCTCATTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGCTGATGCAAAGTCCTTTGAGTTTCCAGCCCCATCTCATTCCT  679

seq1  GCACCTCTCTTGTTCTCCTGAATTTAGAGTCCTGGCAGTAATAAAGAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTCTTGTTCTCCTGAATTTAGAGTCCTGGCAGTAATAAAGAAGA  729

seq1  GGAAGGAAAGTCTCACAAAAAAAAATGCTAGAAAGATGAGACATTTTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAAGTCTCACAAAAAAAAATGCTAGAAAGATGAGACATTTTACA  779

seq1  ATCATTTATCATTTTTCAAAATAACTCCAGCTTCGTTATCTCATGTAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATCATTTTTCAAAATAACTCCAGCTTCGTTATCTCATGTAGGT  829

seq1  ACCTGTGTCCTACAGATAAGGAAACCTAGCTCTTGAGATACAAAACAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCCTACAGATAAGGAAACCTAGCTCTTGAGATACAAAACAATT  879

seq1  TATTTGTCCAGAACCATAGAGATAATAAACATGGGAGCCATGGCATAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCCAGAACCATAGAGATAATAAACATGGGAGCCATGGCATAAAT  929

seq1  CCAGATCCTCTGGCTCTACATCTCTGTCCCTTACACAAAAGGACAACTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCTCTGGCTCTACATCTCTGTCCCTTACACAAAAGGACAACTGC  979

seq1  CAGCAGTCATGTTGATAAAGTGAGAATTTTGCTCTTTTGAATGGGCTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCATGTTGATAAAGTGAGAATTTTGCTCTTTTGAATGGGCTGTG  1029

seq1  ACTGCTTTGCTAGATTTATAATAAAGGTTTTCCTAATATTACTTTTATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTGCTAGATTTATAATAAAGGTTTTCCTAATATTACTTTTATAT  1079

seq1  AAATATTAACTGTGGTTATCATGGCTACTAAAGCCATGGGCTACTCAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAACTGTGGTTATCATGGCTACTAAAGCCATGGGCTACTCAGAA  1129

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1135

seq1: chr18_52845804_52846737
seq2: B6Ng01-146F06.g_67_1004

seq1  GAATTCACTGACCATGCCAAGTCTGAATAGTTTCTGATGGATGAAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCATGCCAAGTCTGAATAGTTTCTGATGGATGAAACAGT  50

seq1  TCATTATTCCTCAAAAGCTTTATAGCATTCCTCCAAAAGACCTTTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCCTCAAAAGCTTTATAGCATTCCTCCAAAAGACCTTTAAACT  100

seq1  TATTTGTCTATGTACAGGAATGCCTGCTGTGTGGGAAGAGTCTCCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTATGTACAGGAATGCCTGCTGTGTGGGAAGAGTCTCCAGTGT  150

seq1  AAACAACGAAAGCAATTTAGGATTTATATTTTTAAAAACTTCAGACCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACGAAAGCAATTTAGGATTTATATTTTTAAAAACTTCAGACCATA  200

seq1  ATCTTCCTCTATGACTAAAGTTCTCTTTTATTCCAAATTTTAAAACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTATGACTAAAGTTCTCTTTTATTCCAAATTTTAAAACTACT  250

seq1  GTTTGCTTTTAGTATAGATAAAAATACAAGAACAAGTGTGAGCCCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTTAGTATAGATAAAAATACAAGAACAAGTGTGAGCCCCATTC  300

seq1  ATAATCCATGTTATCCTTGAAGGGGCTGTGTGTGAGGAAAGGCTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCATGTTATCCTTGAAGGGGCTGTGTGTGAGGAAAGGCTTTTCCT  350

seq1  TGCCCCTTTCCCTTACAATTCATGGCATGTCTGACTTCTTGATTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTTCCCTTACAATTCATGGCATGTCTGACTTCTTGATTTTTGGC  400

seq1  TCTTCTCTGGACTATGAAAATAAGTAAGTAGCTGTGTACTAAGCAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGGACTATGAAAATAAGTAAGTAGCTGTGTACTAAGCAGAGAT  450

seq1  CAAGTATCCTTTGAAAGGGTTATTTGGCTTTTACATGATCTAACTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCCTTTGAAAGGGTTATTTGGCTTTTACATGATCTAACTGACAG  500

seq1  AAAATGAAAATAAAAATAAATCATTTAACTTGTTCCAAATGACAGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATAAAAATAAATCATTTAACTTGTTCCAAATGACAGTGTGT  550

seq1  GACAGGAGAGAATCACATATGCCTATATATTTATTCATCTAGTTCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGAGAATCACATATGCCTATATATTTATTCATCTAGTTCTGTTT  600

seq1  TCTGCATCAACCCTTAGTTGTCATCAGACAAGCCAATAGCCACTAGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCAACCCTTAGTTGTCATCAGACAAGCCAATAGCCACTAGTAGA  650

seq1  AGAGGTAGTTGACCTCTGTCTTCTTTATCTTCTGGTCGTTTGGCTCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGTTGACCTCTGTCTTCTTTATCTTCTGGTCGTTTGGCTCTAGG  700

seq1  TCTTTCTTCAAATCTTAATCCCATCATCCTGTCAATCTCATATGCGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCAAATCTTAATCCCATCATCCTGTCAATCTCATATGCGAGTC  750

seq1  ATGAGAAACACTGAAGGACATTT-GGTATTATATTTATGTGCATGACCAA  799
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  ATGAGAAACACTGAAGGACATTTGGGTATT-TATTTATGTGCATGACCAA  799

seq1  TTGACATAAT-AAAGCCCCTTGATTTTCCAGACATGACACTGAGATAA-T  847
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  TTGACATAATAAAAGCCCCTTGATTTTCCAGACATGACACTGAGATAATT  849

seq1  TTCCCATATGTCTCATGTTTCTGTACATCTTACAAATAACAGACCTACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATATGTCTCATGTTTCTGTACATCTTACAAATAACAGACCTACTG  899

seq1  CTCTACTTTCCAG-ATCATG-TTTTGAGGATGGTTGTAT  934
      ||||||||||||| |||||| ||||||||||||||||||
seq2  CTCTACTTTCCAGAATCATGTTTTTGAGGATGGTTGTAT  938