BAC Information

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BAC

Clone NameB6Ng01-149O08
Chromosome18 (Build37)
Map Location 19,621,265 - 19,622,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624
Downstream geneLOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149O08.bB6Ng01-149O08.g
ACCDH946110DH946111
length1,0811,149
definitionDH946110|Mus musculus domesticus DNA, BAC clone: B6Ng01-149O08, 5' end.DH946111|Mus musculus domesticus DNA, BAC clone: B6Ng01-149O08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttctgacaaatggagattccctacagatacttaaaagaacagcc
aagctactctcaaatgcaagtatttaccaaggcctaggaaaaggggggtt
gtggtattgcattattcatgataaggtctgctagagcagaaccccctggt
gctagctttcacaaggctcaaaggagtagcacaaattgtgactagggtgt
gaaatccttacctgacttagctgactctaggcaaggctgttttatcttta
ctgtaaacattacctggttcctgtcagtcctttgaagtcattcctctgtt
ttgtgtcagatacttctatgtaccttgcctgctgtaacaccctactcctt
tgttttccagttggtctgagagtagtggtgtttacaactaattgatcaca
accagttgttttctgtattatataagcctggtgttcactttgtgaaaaat
tacatccagatatagcacttccttgtgtctgtgaccatttgtcgattctt
gccaactccatgcccacctgtctggaaccttgattccccacagattgaga
gaggctgactgagcccagtctgtggcacttcttcttcctcttcctcttat
tcttcttcatcttcttaatctttattttcttcttcttcttcttcctgctc
ctcctcctcttcttctttggcattattctgaccttattacaagcaattct
tattgtttgaatgaatgctgtataatttattaaagtcgtgaagttggtta
atatttgttttggagaatgtaggctaaaaccaaacatcaaatattggctt
attctattactgatgcttttgatttcacttaactcttagtaacttaggag
cccaaataaacgatagaagcagtattgtagaaatgaaaatgaacagtata
tttaatataattatgttgacaaatttttaaaaattctaaagcattcagca
catataaatgtatttctactttttatgggatgatgaagaattctaaggga
agtctgctcatgtgggatagaaagaagtgttgacagggaaccatcatggc
tgattgcatgtttgatgccgaaccctttata
gaattcttcagcttcatctaaactgtaaaagagagacaactcaatctatg
tgcagtatttcctgagttagcagttgtcccgaaaacctgatgcaatattc
tgcagccacatcttccttagggacctttgcttcatgtgtgtctttgggag
taggaaatcaacattaaagaggcttgattggtaatgttgtaataattctc
tatctcaagaaataagtataatatcaagtaatctaaataaacctcacttg
attttctgattttatttttatatgtaagaagatgtcatatcttcttgaaa
aaaatcacctcattgaatattatattttaacttttgaagtattttgtagg
actccttactctgaaagcgatgtagcatcttcaggttatttttgtttgtg
attgatctttatatgaaattttattgtgtgtgtccatatataagtgtttg
ttccttatagagattacagctgcctaagatgactcaagagctgaatcttt
agtaatgtataaacagcaagagtatatctagattggaataataagaaaaa
caagaagaatgatctttgtaatatctatatccctctttgcccatatttta
caagcaggggagacaattaattacaatgttcatcatgataaactgccata
gcagccacttgacattttaaaataatctgtattttaattgtcaaaaaact
attttatatattcatggggcacaatatcaaactatgaaaaattgtaggat
aattgaataggtccgattaacctatctttgtttcattgttcctcatagtg
aatacagttcagcctacttttaagttgctctgaaagacacagagcattat
tatgaacatgctctcctcactgtgtgactgatcactagaacttattcaca
gcttatctaaactgtgaaccctttgagacacaccatgcacagagctgcac
tatataagaagatgtttgaaaggatttcacatctccctaccgtctcactt
ctagtctttgaagtggttgagctatttactattgctatgctatgttatta
ctctcgcagatgtttttcagttatgtttaagatttctattatagaaggca
tgatccacatactaattgcctttcatgtaaggaatttaattcatgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19621265_19622431
seq2: B6Ng01-149O08.g_68_1216

seq1  GAATTCTTCAGCTTCATCTAAACTGTAAAAGAGAGACAACTCAATCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCTTCATCTAAACTGTAAAAGAGAGACAACTCAATCTATG  50

seq1  TGCAGTATTTCCTGAGTTAGCAGTTGTCCCGAAAACCTGATGCAATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATTTCCTGAGTTAGCAGTTGTCCCGAAAACCTGATGCAATATTC  100

seq1  TGCAGCCACATCTTCCTTAGGGACCTTTGCTTCATGTGTGTCTTTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCACATCTTCCTTAGGGACCTTTGCTTCATGTGTGTCTTTGGGAG  150

seq1  TAGGAAATCAACATTAAAGAGGCTTGATTGGTAATGTTGTAATAATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATCAACATTAAAGAGGCTTGATTGGTAATGTTGTAATAATTCTC  200

seq1  TATCTCAAGAAATAAGTATAATATCAAGTAATCTAAATAAACCTCACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGAAATAAGTATAATATCAAGTAATCTAAATAAACCTCACTTG  250

seq1  ATTTTCTGATTTTATTTTTATATGTAAGAAGATGTCATATCTTCTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGATTTTATTTTTATATGTAAGAAGATGTCATATCTTCTTGAAA  300

seq1  AAAATCACCTCATTGAATATTATATTTTAACTTTTGAAGTATTTTGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACCTCATTGAATATTATATTTTAACTTTTGAAGTATTTTGTAGG  350

seq1  ACTCCTTACTCTGAAAGCGATGTAGCATCTTCAGGTTATTTTTGTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTACTCTGAAAGCGATGTAGCATCTTCAGGTTATTTTTGTTTGTG  400

seq1  ATTGATCTTTATATGAAATTTTATTGTGTGTGTCCATATATAAGTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTTTATATGAAATTTTATTGTGTGTGTCCATATATAAGTGTTTG  450

seq1  TTCCTTATAGAGATTACAGCTGCCTAAGATGACTCAAGAGCTGAATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATAGAGATTACAGCTGCCTAAGATGACTCAAGAGCTGAATCTTT  500

seq1  AGTAATGTATAAACAGCAAGAGTATATCTAGATTGGAATAATAAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTATAAACAGCAAGAGTATATCTAGATTGGAATAATAAGAAAAA  550

seq1  CAAGAAGAATGATCTTTGTAATATCTATATCCCTCTTTGCCCATATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAATGATCTTTGTAATATCTATATCCCTCTTTGCCCATATTTTA  600

seq1  CAAGCAGGGGAGACAATTAATTACAATGTTCATCATGATAAACTGCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGGGAGACAATTAATTACAATGTTCATCATGATAAACTGCCATA  650

seq1  GCAGCCACTTGACATTTTAAAATAATCTGTATTTTAATTGTCAAAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACTTGACATTTTAAAATAATCTGTATTTTAATTGTCAAAAAACT  700

seq1  ATTTTATATATTCATGGGGCACAATATCAAACTATGAAAAATTGTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATATTCATGGGGCACAATATCAAACTATGAAAAATTGTAGGAT  750

seq1  AATTGAATAGGTCCGATTAACCTATCTTTGTTTCATTGTTCCTCATAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATAGGTCCGATTAACCTATCTTTGTTTCATTGTTCCTCATAGTG  800

seq1  AATACAGTTCAGCCTACTTTTAAGTTGCTCTGAAAGACACAGAGCATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTCAGCCTACTTTTAAGTTGCTCTGAAAGACACAGAGCATTAT  850

seq1  TATGAACATGCTCTCCTCACTGTGTGACTGATCACTAGAACTTATTCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATGAACATGCTCTCCTCACTGTGTGACTGATCACTAGAACTTATTC-AC  899

seq1  AGCTTATCTAAAACTGTGAACCCTTTGAGAACACACCATGCACAGAGCTG  950
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTTATCT-AAACTGTGAACCCTTTGAG-ACACACCATGCACAGAGCTG  947

seq1  CACTAATATTAAAGAAGATGTTTGAAAGGATTTCACAATCTCCCTACCGT  1000
      |||| ||||  ||||||||||||||||||||||||| |||||||||||||
seq2  CACT-ATAT--AAGAAGATGTTTGAAAGGATTTCAC-ATCTCCCTACCGT  993

seq1  CTCCACTTCTAGTCTTTGAAGT-GTTGAGCTATTTACCTATTGCTATGCT  1049
      || ||||||||||||||||||| ||||||||||||| |||||||||||| 
seq2  CT-CACTTCTAGTCTTTGAAGTGGTTGAGCTATTTA-CTATTGCTATGC-  1040

seq1  TATGTTATTACTCT-GCAGATG-TTTTCAGTTTATGTTTAAAGATTTCTA  1097
      |||||||||||||| ||||||| ||||||| |||||||| ||||||||||
seq2  TATGTTATTACTCTCGCAGATGTTTTTCAG-TTATGTTT-AAGATTTCTA  1088

seq1  TTAATAGAAGCCAATGATTTCACATACTATTTGGCTTTTCATGTTAAGGA  1147
      || ||||||| | |||| | ||||||||| || || ||||||| ||||||
seq2  TT-ATAGAAGGC-ATGA-TCCACATACTAATT-GCCTTTCATG-TAAGGA  1133

seq1  TATTTTAAATTTCATGTTGA  1167
       ||||   | ||||||||||
seq2  -ATTT---AATTCATGTTGA  1149