BAC Information

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BAC

Clone NameB6Ng01-150N20
Chromosome18 (Build37)
Map Location 41,344,371 - 41,473,945
singlet/doubletdoublet
Overlap geneLOC677182
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150N20.bB6Ng01-150N20.g
ACCDH946834DH946835
length1,1911,017
definitionDH946834|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N20, 5' end.DH946835|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,472,754 - 41,473,945)(41,344,371 - 41,344,981)
sequence
gaattctcttgctctaactctagagagagagagacagctgaaatgcttca
aagaaattcaagtgacttatagaaatgtttatgtggtcaggatgtgggac
tccctaccgacagctgtgtctcagacatgtatttactggcactatacaaa
cctttcaatggatataagttgggttggtcttttgggtgcaacttctttaa
ataccttgaacctgattctccgacttctgctgcaattgaattcctgacca
cagatttaatgagctaatgttttgtattaattcactaagtttggggaatt
ttctaatcaagggacaactactggccctctttggtaaaccttttaaaaag
actatttcaaattgatatatatatataccaaaacatacttatgccaaaaa
aattaaagaagttaccaaaattggaaagtatgtgccttcttgttgtcact
tacatattcgagttaatgttctttagaatttatagaagatggctgattaa
cattgaactgacttaggtcctaaattgattgagaagtgagtctggaagag
cccggttttgagtagtatgtgacaacttcaatttaacttataagtattta
actttgttttgacaaggatccgtaaggcttgaaaatctagagctttttta
acttgggcagtcaatatacagttattcttctctttgcaataaatccatga
aaagtcaacctatacagtcttagggaggatggaggaagttaagtaatgag
attaagacatgactgtggtacttgaactctttaaaagactgtaggactgg
agaaatgactctgctgttactagtactccttatacagaggaactgccttt
agctcccagcacccatgctgggtggctcacaactacttggaatttcagct
gcagggaactcttctcacctctgaggcattttagccatgcacataatctc
atacttctgatacacacacacacacacacacacacacacacgttttaata
tatactttatatattatatgtattagaataaaatcatataaaatagataa
aagtctggtttggagcaaatatattctttttttaactccagaaaggacac
tgaatggtggctgggccaattataaaaaaatccattctaggtataggcaa
ggttaaaagcttctggaaccccaaacaactttgtctcattc
gaattcattagcacaggggggaatttcctaaacagaactccaatggctca
ggcacaaggatgaacaattaataagtaagacctcatgaaactgaaaaact
tcttttaggcaaaagacaatgtcaataggataaaactccagtgtacagaa
cggggaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacaaa
acttcaccaaccctacatcaagcaaaggactaatatccaaaatgtataaa
gataaagatttcaaaaaattaaacaccaacttaccaaataacccaactaa
aactggggtacagagctaaacaaaattctcaatagaggaatcccaaatgg
ccaagaagcccttaaagaaatattcaaagtcctcaatcatcagagaaatg
caaattaattctactttgagatttcatcttactccagtcagaatggtgaa
gttcaaaaactcaagtgatagcagatactggcaaggatgtggagaaaggg
gcacactcctccattgctggagcaaatgcaaactagtacaactactaaga
aaagcaatttggtggtttctcagacactcaggactagttctacctcaaga
accattcctgggcatatacccaaaagatgttacaccatactacaagggca
catgtttcactcagttcatataaactttattcatgatatcctgaaactga
aaataaaccagggtgtccctcaactgaataataataaaaacatatggaac
atctacacagtgggatactactcagctattaaaaacaaagtcatcatgaa
attttcaggcaaatgaatggagccaaaaaatatcctgagtgaaattaccc
agatccagaaagacatgtgtaatatataccccacttagtttcaatctttt
attgatacagtctcctatttttgacaataaaaataccctttatatagaga
agctatttttatttaacattaataatccagtgaagattcgatcagcatta
gctcacctcagcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41472754_41473945
seq2: B6Ng01-150N20.b_47_1237 (reverse)

seq1  GAATGAAGACAAGTGTGTTTGAGTGTTCACAGAAGCTCTATACACTGCAT  50
      ||||| ||||||   |||||| | |||| |||||||| |  ||  ||| |
seq2  GAATG-AGACAAAGTTGTTTG-GGGTTC-CAGAAGCTTTTAACCTTGCCT  47

seq1  ATACCTAGGAATGGATGTTTTCTAT-ATTGGCCCAGCCCACATTCAGTGT  99
      ||||||| |||||||| |||| ||| ||||||||||||  ||||||||||
seq2  ATACCTA-GAATGGAT-TTTTTTATAATTGGCCCAGCCACCATTCAGTGT  95

seq1  CTTTTCTGGAGTTAATACA--GATATATTTGCT-CAAACCAGACTTTTAT  146
      | ||||||||||||| | |   ||||||||||| ||||||||||||||||
seq2  CCTTTCTGGAGTTAAAAAAAGAATATATTTGCTCCAAACCAGACTTTTAT  145

seq1  CTATTTTATATGATTTTTATTCTTAATACATATAATATATACAGTATATA  196
      ||||||||||||| |||||||| |||||||||||||||||| ||||||||
seq2  CTATTTTATATGA-TTTTATTC-TAATACATATAATATATAAAGTATATA  193

seq1  TT-AAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCAG-AGTATGA  244
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCAGAAGTATGA  243

seq1  GATTATGTGCATGGCTAAAATGCCTCAGAGGTGAGAAGAGTTCCCTGCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTGCATGGCTAAAATGCCTCAGAGGTGAGAAGAGTTCCCTGCAG  293

seq1  CTGAAATTCCAAGTAGTTGTGAGCCACCCAGCATGGGTGCTGGGAGCTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCCAAGTAGTTGTGAGCCACCCAGCATGGGTGCTGGGAGCTAA  343

seq1  AGGCAGTTCCTCTGTATAAGGAGTACTAGTAACAGCAGAGTCATTTCTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTCCTCTGTATAAGGAGTACTAGTAACAGCAGAGTCATTTCTCC  393

seq1  AGTCCTACAGTCTTTTAAAGAGTTCAAGTACCACAGTCATGTCTTAATCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACAGTCTTTTAAAGAGTTCAAGTACCACAGTCATGTCTTAATCT  443

seq1  CATTACTTAACTTCCTCCATCCTCCCTAAGACTGTATAGGTTGACTTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTAACTTCCTCCATCCTCCCTAAGACTGTATAGGTTGACTTTTC  493

seq1  ATGGATTTATTGCAAAGAGAAGAATAACTGTATATTGACTGCCCAAGTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTATTGCAAAGAGAAGAATAACTGTATATTGACTGCCCAAGTTA  543

seq1  AAAAAGCTCTAGATTTTCAAGCCTTACGGATCCTTGTCAAAACAAAGTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTCTAGATTTTCAAGCCTTACGGATCCTTGTCAAAACAAAGTTA  593

seq1  AATACTTATAAGTTAAATTGAAGTTGTCACATACTACTCAAAACCGGGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTATAAGTTAAATTGAAGTTGTCACATACTACTCAAAACCGGGCT  643

seq1  CTTCCAGACTCACTTCTCAATCAATTTAGGACCTAAGTCAGTTCAATGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGACTCACTTCTCAATCAATTTAGGACCTAAGTCAGTTCAATGTT  693

seq1  AATCAGCCATCTTCTATAAATTCTAAAGAACATTAACTCGAATATGTAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCATCTTCTATAAATTCTAAAGAACATTAACTCGAATATGTAAG  743

seq1  TGACAACAAGAAGGCACATACTTTCCAATTTTGGTAACTTCTTTAATTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAAGAAGGCACATACTTTCCAATTTTGGTAACTTCTTTAATTTT  793

seq1  TTTGGCATAAGTATGTTTTGGTATATATATATATCAATTTGAAATAGTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATAAGTATGTTTTGGTATATATATATATCAATTTGAAATAGTCT  843

seq1  TTTTAAAAGGTTTACCAAAGAGGGCCAGTAGTTGTCCCTTGATTAGAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGGTTTACCAAAGAGGGCCAGTAGTTGTCCCTTGATTAGAAAA  893

seq1  TTCCCCAAACTTAGTGAATTAATACAAAACATTAGCTCATTAAATCTGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAACTTAGTGAATTAATACAAAACATTAGCTCATTAAATCTGTG  943

seq1  GTCAGGAATTCAATTGCAGCAGAAGTCGGAGAATCAGGTTCAAGGTATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATTCAATTGCAGCAGAAGTCGGAGAATCAGGTTCAAGGTATTT  993

seq1  AAAGAAGTTGCACCCAAAAGACCAACCCAACTTATATCCATTGAAAGGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTGCACCCAAAAGACCAACCCAACTTATATCCATTGAAAGGTT  1043

seq1  TGTATAGTGCCAGTAAATACATGTCTGAGACACAGCTGTCGGTAGGGAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTGCCAGTAAATACATGTCTGAGACACAGCTGTCGGTAGGGAGT  1093

seq1  CCCACATCCTGACCACATAAACATTTCTATAAGTCACTTGAATTTCTTTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCCTGACCACATAAACATTTCTATAAGTCACTTGAATTTCTTTG  1143

seq1  AAGCATTTCAGCTGTCTCTCTCTCTCTAGAGTTAGAGCAAGAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCAGCTGTCTCTCTCTCTCTAGAGTTAGAGCAAGAGAATTC  1191

seq1: chr18_41344371_41344981
seq2: B6Ng01-150N20.g_483_1083

seq1  TGAGATTTCATCTTACTCCAGTCAGAATGGTGAAGTTCAAAAACTCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTCATCTTACTCCAGTCAGAATGGTGAAGTTCAAAAACTCAAGT  50

seq1  GATAGCAGATACTGGCAAGGATGTGGAGAAAGGGGCACACTCCTCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGATACTGGCAAGGATGTGGAGAAAGGGGCACACTCCTCCATTG  100

seq1  CTGGAGCAAATGCAAACTAGTACAACTACTAAGAAAAGCAATTTGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAAATGCAAACTAGTACAACTACTAAGAAAAGCAATTTGGTGGT  150

seq1  TTCTCAGACACTCAGGACTAGTTCTACCTCAAGAACCATTCCTGGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACACTCAGGACTAGTTCTACCTCAAGAACCATTCCTGGGCATA  200

seq1  TACCCAAAAGATGTTACACCATACTACAAGGGCACATGTTTCACTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAAAGATGTTACACCATACTACAAGGGCACATGTTTCACTCAGTT  250

seq1  CATATAAACTTTATTCATGATATCCTGAAACTGAAAATAAACCA-GGTGT  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATATAAACTTTATTCATGATATCCTGAAACTGAAAATAAACCAGGGTGT  300

seq1  CCCTCAACTGAATAATAATAAAAACATATGGAACATCTACACAGTGGGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAACTGAATAATAATAAAAACATATGGAACATCTACACAGTGGGAT  350

seq1  ACTACTCAGCTATTAAAAACAAAGTCATCATGAAATTTTCAGGCAAATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCAGCTATTAAAAACAAAGTCATCATGAAATTTTCAGGCAAATGA  400

seq1  ATGGAGCCAAAAAATATCCTGAGTGAAATAACCCAGATCCAGAAAGACAT  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGAGCCAAAAAATATCCTGAGTGAAATTACCCAGATCCAGAAAGACAT  450

seq1  GTGTAATATATA-CTCACTTAGTTTCAATCTTTTAATGATAACAGTCTTC  498
      |||||||||||| | |||||||||||||||||||| |||| |||||| ||
seq2  GTGTAATATATACCCCACTTAGTTTCAATCTTTTATTGAT-ACAGTC-TC  498

seq1  CTATTTTTGACAATAAAAATACTCTTTTATATAGGAAGAAAGCTATTTTT  548
      |||||||||||||||||||||| | |||||||||  || |||||| ||||
seq2  CTATTTTTGACAATAAAAATAC-CCTTTATATAG--AG-AAGCTA-TTTT  543

seq1  TATTTAACATTAATTAAATCCAAGTGGAAGATTCAGATCAGCATTAGCTC  598
      ||||||||||||||  ||||| ||| |||||||| |||||||||||||||
seq2  TATTTAACATTAAT--AATCC-AGT-GAAGATTC-GATCAGCATTAGCTC  588

seq1  A-CTCAGCCAGAAA  611
      | ||||| ||||||
seq2  ACCTCAG-CAGAAA  601