BAC Information

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BAC

Clone NameB6Ng01-151E03
ChromosomeX (Build37)18 (Build37)
Map Location 42,936,143 - 42,937,27018,109,613 - 18,110,155
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151E03.bB6Ng01-151E03.g
ACCDH947126DH947127
length1,1261,009
definitionDH947126|Mus musculus domesticus DNA, BAC clone: B6Ng01-151E03, 5' end.DH947127|Mus musculus domesticus DNA, BAC clone: B6Ng01-151E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,936,143 - 42,937,270)(18,109,613 - 18,110,155)
sequence
gaattctacatctttacctgtgttctcctgtatttcttttcttttttggt
atttcaagacagggtttctgtgtataaccatggatgtcctggaactcccg
ctgtagatcaggctagcctcaaactcagaaatctgcctgcctctgcctcc
aaggtgctgggattaaaggcatacaccaccactgcctactgtatttcttt
aagggagtcatttatgtccttcttaaagtcctctgttgtcaccacgagat
gtgatttcaaatctcagccttgattttctggtgtgttgtggtatccaggc
ctgtcctcagttgtgtcctgtatactgaggactctggacaggtccctcag
agcagaagtggtggtcttacctgtgttcacaggtgtatcagcactcctgg
gagatcagctctctctccgggaggaatttgggtaaggagagttgtggcac
atggtcagctccaggggcagatatatttatcacttttaccaaatcctttt
tctccaccaactcctcacatgaccctcaactctctcaaaaaatttatgat
cttccttaaatattatttaaattttttgtactctgatattggaaaaaata
tatgcccttgaatcagggcaattcattgtggtaacacagaatctacttca
caaaattaaatcagtgattttttttttaaatcctagttctactatacttt
aattctaagactaccaaatcgttgtcattttgcttgatgatggtattatt
tgcagtgttggggattgaagacagggcttatgcatgctatgtaagtgcat
tataactaatttatatttttagactttgaatatgcacttatgactactct
acataaatatccatttttttgcatagcagaggtattaataacaataatta
tcctaaaatctctactataaaactataatgacattgaagttctaaactat
taagatatttcctgggatgggatttataaaatttacacatatcaaatgtt
aaaaaaacagcaatttaaatatttttttatactataatcctcttcacttt
tttttattgtccaagcctcatccctcacaatttgttatcttttttctata
aattgttattggtttgtgtactaaat
gaattcctgatctttccaagacttttatcgagaatgggtgttggattttg
tcaaatcctttctctgcatctaacgagatgatcatgtgtttttttgtctt
tgagtttgtttatatagtggattacattgatggatttccgtatattaaac
catccctgcatccctggaatgaaacctacttggtcagaatggatgattgt
tttgatgtgttcttggattcagttagcaagaattttattatttttgcctt
gatattcataagggaaattgatctgaagttctgtatctttcttgggtctt
tctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggt
agagtacattctgtttctatcttgcagaatagtttgggaaggactggaat
tagatcttctttgaaattctgatagaattttgcactaaacatatctgtaa
ttgggcttttttgattgggagactattaatgactgcttctatttctttag
ggaatataggaccatttagatcattaacctgatcttgatataaatttggt
acctggtatctgtctagaaacctgtccatttcatccaggttctccagttt
tgttgaatatagccttttgtggaaggatctgatggtgttttggatttctt
caagatctgctgttatgtctcccttttcatttctgattttgttaattagg
atgctgtccctgtgccctctagtgagtctggctaagtgtttatctatctt
gttgattttctcaaagtaccagttccttgtttgattgattctttgaatag
ttcttgttttcacttggttgatttcgactctgagtttgattatttcctgt
catctactccttttgggtgaatttgcttcctgttctagagcttttaggtg
tgctgtcagctgctagttcttctctctcatttcatttggaggccctcaga
tctatgagttttcctcttacaattgctttcattgtgtcccatagtttgga
tatgttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42936143_42937270
seq2: B6Ng01-151E03.b_46_1171 (reverse)

seq1  ATTTATGTACACAAA-CAATAACAA-TTATAG-AAAAAGATAACAAATTT  47
      ||||| ||||||||| ||||||||| |||||| |||||||||||||| ||
seq2  ATTTA-GTACACAAACCAATAACAATTTATAGAAAAAAGATAACAAA-TT  48

seq1  GTGAGGGATGAGGCTTGGAC-ATAAAAATAGTTGAAGAGGATTATTAGTA  96
      |||||||||||||||||||| ||||||| |  |||||||||||| |||||
seq2  GTGAGGGATGAGGCTTGGACAATAAAAAAAAGTGAAGAGGATTA-TAGTA  97

seq1  TAAAAATAT-TTTAAATTGCCTGTTTTTTTTAACATTTGATATGTGTAAA  145
      |||||| || ||||||||| ||| ||||||||||||||||||||||||||
seq2  TAAAAAAATATTTAAATTG-CTG-TTTTTTTAACATTTGATATGTGTAAA  145

seq1  TTTTTATAAATCCCATCCCAGGAAATATCTTAATAGTTTAGAACTTCAAT  195
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -TTTTATAAATCCCATCCCAGGAAATATCTTAATAGTTTAGAACTTCAA-  193

seq1  TGTCATTATAGTTTTATAGTAGAGATTTTAGGATAATTATTGTTATTAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTATAGTTTTATAGTAGAGATTTTAGGATAATTATTGTTATTAAT  243

seq1  ACCTCTGCTATGCAAAAAAATGGATATTTATGTAGAGTAGTCATAAGTGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTATGCAAAAAAATGGATATTTATGTAGAGTAGTCATAAGTGC  293

seq1  ATATTCAAAGTCTAAAAATATAAATTAGTTATAATGCACTTACATAGCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAGTCTAAAAATATAAATTAGTTATAATGCACTTACATAGCAT  343

seq1  GCATAAGCCCTGTCTTCAATCCCCAACACTGCAAATAATACCATCATCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGCCCTGTCTTCAATCCCCAACACTGCAAATAATACCATCATCAA  393

seq1  GCAAAATGACAACGATTTGGTAGTCTTAGAATTAAAGTATAGTAGAACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGACAACGATTTGGTAGTCTTAGAATTAAAGTATAGTAGAACTA  443

seq1  GGATTTAAAAAAAAAATCACTGATTTAATTTTGTGAAGTAGATTCTGTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAAAAAAAAATCACTGATTTAATTTTGTGAAGTAGATTCTGTGT  493

seq1  TACCACAATGAATTGCCCTGATTCAAGGGCATATATTTTTTCCAATATCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAATGAATTGCCCTGATTCAAGGGCATATATTTTTTCCAATATCA  543

seq1  GAGTACAAAAAATTTAAATAATATTTAAGGAAGATCATAAATTTTTTGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAAAAAATTTAAATAATATTTAAGGAAGATCATAAATTTTTTGAG  593

seq1  AGAGTTGAGGGTCATGTGAGGAGTTGGTGGAGAAAAAGGATTTGGTAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGGGTCATGTGAGGAGTTGGTGGAGAAAAAGGATTTGGTAAAA  643

seq1  GTGATAAATATATCTGCCCCTGGAGCTGACCATGTGCCACAACTCTCCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATATATCTGCCCCTGGAGCTGACCATGTGCCACAACTCTCCTT  693

seq1  ACCCAAATTCCTCCCGGAGAGAGAGCTGATCTCCCAGGAGTGCTGATACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATTCCTCCCGGAGAGAGAGCTGATCTCCCAGGAGTGCTGATACA  743

seq1  CCTGTGAACACAGGTAAGACCACCACTTCTGCTCTGAGGGACCTGTCCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAACACAGGTAAGACCACCACTTCTGCTCTGAGGGACCTGTCCAG  793

seq1  AGTCCTCAGTATACAGGACACAACTGAGGACAGGCCTGGATACCACAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAGTATACAGGACACAACTGAGGACAGGCCTGGATACCACAACA  843

seq1  CACCAGAAAATCAAGGCTGAGATTTGAAATCACATCTCGTGGTGACAACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAAATCAAGGCTGAGATTTGAAATCACATCTCGTGGTGACAACA  893

seq1  GAGGACTTTAAGAAGGACATAAATGACTCCCTTAAAGAAATACAGTAGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTTAAGAAGGACATAAATGACTCCCTTAAAGAAATACAGTAGGC  943

seq1  AGTGGTGGTGTATGCCTTTAATCCCAGCACCTTGGAGGCAGAGGCAGGCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTGTATGCCTTTAATCCCAGCACCTTGGAGGCAGAGGCAGGCA  993

seq1  GATTTCTGAGTTTGAGGCTAGCCTGATCTACAGCGGGAGTTCCAGGACAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTTGAGGCTAGCCTGATCTACAGCGGGAGTTCCAGGACAT  1043

seq1  CCATGGTTATACACAGAAACCCTGTCTTGAAATACCAAAAAAGAAAAGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTATACACAGAAACCCTGTCTTGAAATACCAAAAAAGAAAAGAA  1093

seq1  ATACAGGAGAACACAGGTAAAGATGTAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ATACAGGAGAACACAGGTAAAGATGTAGAATTC  1126

seq1: chr18_18109613_18110155
seq2: B6Ng01-151E03.g_67_605 (reverse)

seq1  ATCAAGATCAGGTTAATGATCTAAACAGCCCGATATCCCCCAAAGAAATA  50
      |||||||||||||||||||||||||  | || |||| ||| |||||||||
seq2  ATCAAGATCAGGTTAATGATCTAAATGGTCCTATATTCCCTAAAGAAATA  50

seq1  GAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGG  100
      ||||||||||||||||||||||||| | |||||||||||    |||||  
seq2  GAAGCAGTCATTAATAGTCTCCCAATC-AAAAAAGCCCAATTACAGATAT  99

seq1  GTTTAGTGCAGAGTTCTATCAGACCTCCAAAGAAGATCTAATCCCAGTTC  150
      |||||||||| | ||||||||||  | ||||||||||||||| ||||| |
seq2  GTTTAGTGCAAAATTCTATCAGAATTTCAAAGAAGATCTAATTCCAGTCC  149

seq1  TTCACAAACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAACTCA  200
      ||| ||||||||||  ||| |||||||||||| |||||||||||||||||
seq2  TTCCCAAACTATTCTGCAAGATAGAAACAGAATGTACTCTACCCAACTCA  199

seq1  TTCTATGAAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCCAC  250
      |||||||||||||||||||||||||||||||||||||| |||||||| | 
seq2  TTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGACCCAAG  249

seq1  AAAGATAGAGAACTTCAGACCAATATCCCTTCTGAATATTGGTGCAAAAA  300
      ||||||| ||||||||||| |||| |||||| |||||||    |||||||
seq2  AAAGATACAGAACTTCAGATCAATTTCCCTTATGAATATCAAGGCAAAAA  299

seq1  TCCTCAATAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATC  350
      |    |||||| ||||||||||| ||||||||||||||||||||||||||
seq2  T----AATAAAATTCTTGCTAACTGAATCCAAGAACACATCAAAACAATC  345

seq1  TTCCATCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAA  400
       ||||| ||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATCCATTCTGACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAA  395

seq1  TATACAGAAATCCATCAATGTAATCCAGTATATAAACAAACTCAAAGAC-  449
      ||||| ||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TATACGGAAATCCATCAATGTAATCCACTATATAAACAAACTCAAAGACA  445

seq1  AAAAACCACATGATCATCTCGTTAGATGCTGAGAAAGCATTTGACAAAAT  499
      ||||| ||||||||||||||||||||||| ||||||| ||||||||||||
seq2  AAAAAACACATGATCATCTCGTTAGATGCAGAGAAAGGATTTGACAAAAT  495

seq1  CCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  543
      |||||||||||||  |||||||||||||||||||||||||||||
seq2  CCAACACCCATTCTCGATAAAAGTCTTGGAAAGATCAGGAATTC  539