BAC Information

Click to search

BAC

Clone NameB6Ng01-152D22
Chromosome18 (Build37)
Map Location 67,918,247 - 68,134,957
singlet/doubletdoublet
Overlap geneSeh1l, LOC667939, D18Ertd653e
Upstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2
Downstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D22.bB6Ng01-152D22.g
ACCDH947865DH947866
length9951,158
definitionDH947865|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D22, 5' end.DH947866|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,918,247 - 67,918,977)(68,133,791 - 68,134,957)
sequence
gaattcactctgtagaccaggttgtcccggaactcagggatctctgcctg
cctctgcctcccaaatgcttggattaaagggatgtccagtgtgccaggga
tgctgaaaagtagctctccacaactgatggctcctggaagaggaacaaga
tgggagggacttggttctatttaaggggcaggccactgagggttaaacca
tgctccattgagtatatagataatgcaaagtgtggagttgtacatatttt
tattttttacttctttgtggggagcggcgtgagagaccagatcttggttt
cagactctatttagagaacctgacctagggttgaactctctagtatgagt
ttctaagatactccacaacagacctgtgtctagcaccagtttccaggtta
ttccccaacaaacttgcatctaacaccagtttccaggttgcaagcctgcc
cctgacacttcactccctaacaaccaccaatcagaaggaagacagaagtt
acgtgtttggtttggctcccagcaccagccagttatttaaagggcaacaa
gattccataatagtcccccagtcagacgtgtgccaggctagaaaccccct
ttgcttgtttgctcatctctataaatgcttgcttgaaactgggttctggg
ctacacccttctgtcctgctgcatcagagatggtggtgtggtccaagctc
aagcttgaataaaaaggtcctaatacaacaaaatttgagttggctccttg
gtggtcttttgcggttcttgaacatgcacaacaggtgttaggtcacaagg
agggggtggtggacatggtagggctggaaagggattatgatcagggttgc
atgatgtgacactttcagagaatcattataatattatgtgaaaaaaataa
aggaagaaaattgcccccataggcttaaggaagcatgttgttgaaggtgt
ggcctgttggaatagtgtggctctgtctggaaggattgtggcact
gaattcctgacttccttcattgatgaacagcaatgtggaagcagaagcca
actaaacatttttctccccaacttgctttagtcacagtgttttattacaa
caacactaacaccttattaagacagtggagttgagggataactcaatggg
ttaagcacttggtgcacaacggagtctggacaacactcccacccccagaa
caacataaatcccagcgtgcctatggcaaaattgaaggtggaaggagaca
caagaacccctgtgagcctgggtgccagctgacatgaagaaccagcaaac
aagcaaccctgtctcaaacaacagggacggtgaggagctacacctgaggg
cacctcagaccttcatgtgggcaccatggcacccacatgcattcacacac
acacactcatgtgcacgatgagaagtgaaagtgggaggaaggaaagaaag
aggcaaagggagggacatgtcccagtgagcccttaaaggcttaatcccac
taggcctgcctcctggatttgttaaaccctgaaagcacgtgtgcctttgg
ggacccaatgagcaaggtcttggaaaacccttttcctatcttctgggaac
tccctcctcctactcaccagccctggctcaccatgctccctgctctctca
gttgctccgcccaggaagtctctacccttcaccatgaaaacctgttccat
tcagctcacagttctagcacatgcattcagaaatctcagcctcctcatgg
agtagattatggctggtgttcatatccccccaaccacaagtttgatctcc
aaggctttctcccagctatggaagaaaattcaatattcagtattaaaata
gcaattctgcatgtatacccgagtcctcggttccttggaaccttccacag
cttcatagcaagctgccaagcacgcacacttccagcttatcttcaggctg
caagcaaaaaggcagtagagcggtcaacaccatcttcctgggtggaggtt
tgctgtcaaaactcgctacgtttgatgtcaaagaacttctagtgtaaaaa
agccagggcagccttgtgaccaagaatatttccacttaagaagcttgtgt
tcaacctcttggaaagggacattaatggagagactggaacttggcgcttt
aagggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_67918247_67918977
seq2: B6Ng01-152D22.b_307_1035

seq1  GTGGGGAGCGGCGTGAGAGACCAGATCTTGGTTTCAGACTCTATTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGCGGCGTGAGAGACCAGATCTTGGTTTCAGACTCTATTTAGAG  50

seq1  AACCTGACCTAGGGTTGAACTCTCTAGTATGAGTTTCTAAGATACTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACCTAGGGTTGAACTCTCTAGTATGAGTTTCTAAGATACTCCAC  100

seq1  AACAGACCTGTGTCTAGCACCAGTTTCCAGGTTATTCCCCAACAAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCTGTGTCTAGCACCAGTTTCCAGGTTATTCCCCAACAAACTTG  150

seq1  CATCTAACACCAGTTTCCAGGTTGCAAGCCTGCCCCTGACACTTCACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACACCAGTTTCCAGGTTGCAAGCCTGCCCCTGACACTTCACTCC  200

seq1  CTAACAACCACCAATCAGAAGGAAGACAGAAGTTACGTGTTTGGTTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACCACCAATCAGAAGGAAGACAGAAGTTACGTGTTTGGTTTGGC  250

seq1  TCCCAGCACCAGCCAGTTATTTAAAGGGCAACAAGATTCCATAATAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACCAGCCAGTTATTTAAAGGGCAACAAGATTCCATAATAGTCC  300

seq1  CCCAGTCAGACGTGTGCCAGGCTAGAAACCCCC-TTGCTTGTTTGCTCAT  349
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCAGTCAGACGTGTGCCAGGCTAGAAACCCCCTTTGCTTGTTTGCTCAT  350

seq1  CTCTATAAATGCTTGCTTGAAACTGGGTTCTGGGCTACACCCTCCTGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCTATAAATGCTTGCTTGAAACTGGGTTCTGGGCTACACCCTTCTGTCC  400

seq1  TGCTGCATCAGAGATGGTGGTGTGGTCCAAGCTCAAGCTTGAATAAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATCAGAGATGGTGGTGTGGTCCAAGCTCAAGCTTGAATAAAAAG  450

seq1  GTCCTAATACAACAAAATTTGAGTTGGCTCCTTGGTGGTCTTTTGCGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAATACAACAAAATTTGAGTTGGCTCCTTGGTGGTCTTTTGCGGTT  500

seq1  CTTGAACATGCACAACAGG-GGTAGGTCACAAGGA-GGGGTGGTGGACAT  547
      ||||||||||||||||||| | ||||||||||||| ||||||||||||||
seq2  CTTGAACATGCACAACAGGTGTTAGGTCACAAGGAGGGGGTGGTGGACAT  550

seq1  GGTAGGGCTGGAAAGGGATTATGATCAGGG-TGCATGATGTGACACTTCC  596
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GGTAGGGCTGGAAAGGGATTATGATCAGGGTTGCATGATGTGACACTTTC  600

seq1  AGAGAATCAATAGAAATATTATGTGAAAAAAAGTAAAGGAAAGAAAATGG  646
      ||||||||| ||  |||||||||||||||||| |||||| |||||||| |
seq2  AGAGAATCATTA-TAATATTATGTGAAAAAAA-TAAAGG-AAGAAAATTG  647

seq1  CCCCCATAGGCTTATAGGAAGCAGTGTTGTTGGAGGTGTGGCCTTGTTGG  696
      |||||||||||||| |||||||| |||||||| |||||||||| ||||||
seq2  CCCCCATAGGCTTA-AGGAAGCA-TGTTGTTGAAGGTGTGGCC-TGTTGG  694

seq1  AATAGGTGTGGCTCTG-CTGGAGGAATTGTGTCACT  731
      |||| ||||||||||| ||||| | |||||| ||||
seq2  AATA-GTGTGGCTCTGTCTGGAAGGATTGTGGCACT  729

seq1: chr18_68133791_68134957
seq2: B6Ng01-152D22.g_67_1224 (reverse)

seq1  GTTCCCTTAAAGGCGCAGTGGTCAGGGCTCTCCATGTATGTCCTTTTTCC  50
      ||||||||||| ||||   | ||  | ||||||||  ||||||  |||||
seq2  GTTCCCTTAAA-GCGCCAAGTTCCAGTCTCTCCATTAATGTCC-CTTTCC  48

seq1  AAAGAGTTGAACACAAGCTTTCCTTAGTGG-AATATCTCTGGTCACAAGG  99
      ||   ||||||||||||| ||| | ||||| |||||   |||||||||||
seq2  AAGAGGTTGAACACAAGC-TTCTTAAGTGGAAATATTCTTGGTCACAAGG  97

seq1  CTGCCCTGGCCTCTTTACACTTAGGAG-TCTCTGAACATCAAACTGTTGG  148
      |||||||||| | ||||||| ||| || ||| || |||||||||   | |
seq2  CTGCCCTGGCTTTTTTACAC-TAGAAGTTCTTTG-ACATCAAAC--GTAG  143

seq1  CGAGGTTTTGACAGCAAATCTCCA-CCAGGAAGGATGGTGTTGACCGCTC  197
      ||| |||||||||||||| ||||| ||||||| |||||||||||||||||
seq2  CGA-GTTTTGACAGCAAACCTCCACCCAGGAA-GATGGTGTTGACCGCTC  191

seq1  TACCTGCCTTTTTGCTTGCAGCCCTGGAGATAAGCCTTGGAAGTGTGCGT  247
      || |||||||||||||||||| |||| ||||||||  |||||||||||||
seq2  TA-CTGCCTTTTTGCTTGCAG-CCTGAAGATAAGC--TGGAAGTGTGCGT  237

seq1  GCTTGGCAGCTTGCTATGGAGCTGTGGAAGGTTCCAAGGAACCGAGGACT  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTTGGCAGCTTGCTATGAAGCTGTGGAAGGTTCCAAGGAACCGAGGACT  287

seq1  CGGGTATACATGCAGAATTGCTATTTTAATACTGAATATTGAA-TTTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGGGTATACATGCAGAATTGCTATTTTAATACTGAATATTGAATTTTCTT  337

seq1  CCATAGCTGGGAGAAAGCCTTGGAGATCAAACTTGTGGTTGGGGGGATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTGGGAGAAAGCCTTGGAGATCAAACTTGTGGTTGGGGGGATAT  387

seq1  GAACACCAGCCATAATCTACTCCATGAGGAGGCTGAGATTTCTGAATGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAGCCATAATCTACTCCATGAGGAGGCTGAGATTTCTGAATGCA  437

seq1  TGTGCTAGAACTGTGAGCTGAATGGAACAGGTTTTCATGGTGAAGGGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGAACTGTGAGCTGAATGGAACAGGTTTTCATGGTGAAGGGTAG  487

seq1  AGACTTCCTGGGCGGAGCAACTGAGAGAGCAGGGAGCATGGTGAGCCAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCTGGGCGGAGCAACTGAGAGAGCAGGGAGCATGGTGAGCCAGG  537

seq1  GCTGGTGAGTAGGAGGAGGGAGTTCCCAGAAGATAGGAAAAGGGTTTTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGTAGGAGGAGGGAGTTCCCAGAAGATAGGAAAAGGGTTTTCC  587

seq1  AAGACCTTGCTCATTGGGTCCCCAAAGGCACACGTGCTTTCAGGGTTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTGCTCATTGGGTCCCCAAAGGCACACGTGCTTTCAGGGTTTAA  637

seq1  CAAATCCAGGAGGCAGGCCTAGTGGGATTAAGCCTTTAAGGGCTCACTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAGGAGGCAGGCCTAGTGGGATTAAGCCTTTAAGGGCTCACTGG  687

seq1  GACATGTCCCTCCCTTTGCCTCTTTCTTTCCTTCCTCCCACTTTCACTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTCCCTCCCTTTGCCTCTTTCTTTCCTTCCTCCCACTTTCACTTC  737

seq1  TCATCGTGCACATGAGTGTGTGTGTGTGAATGCATGTGGGTGCCATGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTGCACATGAGTGTGTGTGTGTGAATGCATGTGGGTGCCATGGTG  787

seq1  CCCACATGAAGGTCTGAGGTGCCCTCAGGTGTAGCTCCTCACCGTCCCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGAAGGTCTGAGGTGCCCTCAGGTGTAGCTCCTCACCGTCCCTG  837

seq1  TTGTTTGAGACAGGGTTGCTTGTTTGCTGGTTCTTCATGTCAGCTGGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGACAGGGTTGCTTGTTTGCTGGTTCTTCATGTCAGCTGGCAC  887

seq1  CCAGGCTCACAGGGGTTCTTGTGTCTCCTTCCACCTTCAATTTTGCCATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCACAGGGGTTCTTGTGTCTCCTTCCACCTTCAATTTTGCCATA  937

seq1  GGCACGCTGGGATTTATGTTGTTCTGGGGGTGGGAGTGTTGTCCAGACTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCTGGGATTTATGTTGTTCTGGGGGTGGGAGTGTTGTCCAGACTC  987

seq1  CGTTGTGCACCAAGTGCTTAACCCATTGAGTTATCCCTCAACTCCACTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGCACCAAGTGCTTAACCCATTGAGTTATCCCTCAACTCCACTGT  1037

seq1  CTTAATAAGGTGTTAGTGTTGTTGTAATAAAACACTGTGACTAAAGCAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAAGGTGTTAGTGTTGTTGTAATAAAACACTGTGACTAAAGCAAG  1087

seq1  TTGGGGAGAAAAATGTTTAGTTGGCTTCTGCTTCCACATTGCTGTTCATC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAAAATGTTTAGTTGGCTTCTGCTTCCACATTGCTGTTCATC  1137

seq1  AATGAAGGAAGTCAGGAATTC  1167
      |||||||||||||||||||||
seq2  AATGAAGGAAGTCAGGAATTC  1158