BAC Information

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BAC

Clone NameB6Ng01-159D18
Chromosome18 (Build37)
Map Location 85,673,071 - 85,887,357
singlet/doubletdoublet
Overlap geneLOC665382
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159D18.bB6Ng01-159D18.g
ACCDH952956DH952957
length1,1661,137
definitionDH952956|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D18, 5' end.DH952957|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,886,194 - 85,887,357)(85,673,071 - 85,674,158)
sequence
gaattcttacagaatgaaatgagccgctctaattaatgtcactgcgaata
agaccttgtcacagttatctactggcaaaacaccatgtgacagacacatt
caggacaggccatgggtctcagaaaaaaatgcgactgcaaattggatctt
cttcctggaatgttcgtcaaaatccttccctctatccatctctttcttgg
actgttttcatatcaaatctaaatgaaagtggtgctcagagtttatagag
taaaattctaagcaggaactcagtcactgcctctaaaatgatcctacaga
acaaggtaaaacatcagtttcgaacaattgattttgattttgagtagcat
tcgtgaagatgcaagaaacatcaagataaaattagtattgaatgtgacta
agaaaaggttttatttccaaatgctcatttaaatacaaatgaaaatagtt
tcttaaaggtttccatctctaaaactttggcaatagatatatccaactga
tgacaaattgtgcagtttcagctattaggattacctatttacatttagca
acaagcaataactatacttttctataccgttgtatgatactgtttgataa
tgaaacatagaataatattaataataataataataattttaataatgcat
tcttcctcctggcctttttttcccatcaataatcactctgagaccaatta
gttattaaatgcctcagccataagcattgacccattccctaactagctct
taacttatttaacccatttaaactattctgtctaccatatagtcagctac
ctttccttcagtcctggcctgcttctttgtctcttgtagctctccctata
tctctcttttattgctcactattacccagaatcctctcacttcctgccgg
tgaaccacctcctggttcctgcctcagctcatttgctgtcggctttgtta
ttaacaggtgatgtttatagaggttttctctacaaaatactaaagcttgt
catagggaggacttttaggtggtgactagatatagtggtggccataagtg
gacaacgtttgtggtgctaggtgtcttaaagaagagatgaagagggttca
tttctctctccacctccaggtgagaaagagagttatggggacccatcttg
agaggcagagacctct
gaattcagtaggaatttagcaagaatgttacctattcagtaacattcaaa
tttacttctagtagagacagtgaaactaattaggcattacaaagaacaga
gctagaataactcagggctagtctgtagagtgattacttaggacagtagc
cagtctcacccaaacaagggaatacacaatggcctagtgaataggtgggt
tttgccatgaaagagttagggattccccctgagacaggtttctttactag
gcccaaagaaacagcataatcaagcatttactaagaacctctgctggtgg
gcttaacaatagactagctttatacctggtggcagtggcctggtccccac
cttcttttgatgtatacattccttttgtattgtgtcactgtaactcagca
gatgtatctcgcctggtttcttgtcactcttctgtataaaaagtatgatc
tcgacttgaaaaattacattcagattctacacaatctctcgtgtgattct
gtctgtcattcatttgctgactccttgtccacctgcaaccagagactggt
tctatgcagacagggaccaaaaggatctgtggcaagccatgctatctctg
aagtctgagccacttggactccatcacagcacagacctttaccctcttca
gtatctcaatattaaatcagaaccctgtggagacactgtggccatatttg
tttatttttacatgcctttcagcatatatttgttcatgaatggtgctcag
ttaattattagagaattaacaattatgctatcatactttggaaaacatta
tctaatataaaatattaacttcagttaagactaaatattgttgcttccca
agctaagataatttgcacctcatgattgtaatgataatgggtggtacagg
ccaaactccaaattcttcagaggaaacacacatatacccttcttcaaatt
aagccatacattaaagtgcagagtctttttgacctcaagtggctatacct
actacccaggatactaagtctagactctgtcttaggattgggataatgac
ctcctctattaggaggacccatttcctttgtttggaatttaaagatcaaa
attacatgaccattcgagaactgcggaacctggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85886194_85887357
seq2: B6Ng01-159D18.b_44_1209 (reverse)

seq1  AGAGG--TCTGCCTTCTCAAGATGTGTCCCCATGAACTTCCTTTCT-ACC  47
      |||||  |||||| |||||||||| |||||||| ||||  |||||| |||
seq2  AGAGGTCTCTGCC-TCTCAAGATGGGTCCCCAT-AACTCTCTTTCTCACC  48

seq1  TGCGAGTGAAGAGA-AAATGAACCCTC-TCATCT-TCCTTTAAGACCACC  94
      ||   ||| ||||| |||||||||||| |||||| | |||||||| ||||
seq2  TGGAGGTGGAGAGAGAAATGAACCCTCTTCATCTCTTCTTTAAGA-CACC  97

seq1  TAGCACCAC-AACGTTGTCACCTTATGGCCA-CACTATATCTTAGTCACA  142
      ||||||||| |||||||||  |||||||||| ||||||||| ||||||| 
seq2  TAGCACCACAAACGTTGTCCACTTATGGCCACCACTATATC-TAGTCACC  146

seq1  CCCTAAAAGTCCTTCCCTATGACAAGCTTTAGTATTTTGTAGAGAAAACC  192
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAGTCC-TCCCTATGACAAGCTTTAGTATTTTGTAGAGAAAACC  195

seq1  TCTTATAAACATCACCTGTTAATAACAAAGCCGACAGCAAATGAGCTGAG  242
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TATAAACATCACCTGTTAATAACAAAGCCGACAGCAAATGAGCTGAG  244

seq1  GCAGGAACCAGGAGGTGGTTCACCGGCAGGAAGTGAGAGGATTCTGGGTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACCAGGAGGTGGTTCACCGGCAGGAAGTGAGAGGATTCTGGGTA  294

seq1  ATAGTGAGCAATAAAAGAGAGATATAGGGAGAGCTACAAGAGACAAAGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGCAATAAAAGAGAGATATAGGGAGAGCTACAAGAGACAAAGAA  344

seq1  GCAGGCCAGGACTGAAGGAAAGGTAGCTGACTATATGGTAGACAGAATAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCAGGACTGAAGGAAAGGTAGCTGACTATATGGTAGACAGAATAG  394

seq1  TTTAAATGGGTTAAATAAGTTAAGAGCTAGTTAGGGAATGGGTCAATGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGGTTAAATAAGTTAAGAGCTAGTTAGGGAATGGGTCAATGCT  444

seq1  TATGGCTGAGGCATTTAATAACTAATTGGTCTCAGAGTGATTATTGATGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGAGGCATTTAATAACTAATTGGTCTCAGAGTGATTATTGATGG  494

seq1  GAAAAAAAGGCCAGGAGGAAGAATGCATTATTAAAATTATTATTATTATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGGCCAGGAGGAAGAATGCATTATTAAAATTATTATTATTATT  544

seq1  ATTAATATTATTCTATGTTTCATTATCAAACAGTATCATACAACGGTATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTATTCTATGTTTCATTATCAAACAGTATCATACAACGGTATA  594

seq1  GAAAAGTATAGTTATTGCTTGTTGCTAAATGTAAATAGGTAATCCTAATA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTATAGTTATTGCTTGTTGCTAAATGTAAATAGGTAATCCTAATA  644

seq1  GCTGAAACTGCACAATTTGTCATCAGTTGGATATATCTATTGCCAAAGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACTGCACAATTTGTCATCAGTTGGATATATCTATTGCCAAAGTT  694

seq1  TTAGAGATGGAAACCTTTAAGAAACTATTTTCATTTGTATTTAAATGAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATGGAAACCTTTAAGAAACTATTTTCATTTGTATTTAAATGAGC  744

seq1  ATTTGGAAATAAAACCTTTTCTTAGTCACATTCAATACTAATTTTATCTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATAAAACCTTTTCTTAGTCACATTCAATACTAATTTTATCTT  794

seq1  GATGTTTCTTGCATCTTCACGAATGCTACTCAAAATCAAAATCAATTGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTTGCATCTTCACGAATGCTACTCAAAATCAAAATCAATTGTT  844

seq1  CGAAACTGATGTTTTACCTTGTTCTGTAGGATCATTTTAGAGGCAGTGAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACTGATGTTTTACCTTGTTCTGTAGGATCATTTTAGAGGCAGTGAC  894

seq1  TGAGTTCCTGCTTAGAATTTTACTCTATAAACTCTGAGCACCACTTTCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTGCTTAGAATTTTACTCTATAAACTCTGAGCACCACTTTCAT  944

seq1  TTAGATTTGATATGAAAACAGTCCAAGAAAGAGATGGATAGAGGGAAGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGATATGAAAACAGTCCAAGAAAGAGATGGATAGAGGGAAGGA  994

seq1  TTTTGACGAACATTCCAGGAAGAAGATCCAATTTGCAGTCGCATTTTTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACGAACATTCCAGGAAGAAGATCCAATTTGCAGTCGCATTTTTTT  1044

seq1  CTGAGACCCATGGCCTGTCCTGAATGTGTCTGTCACATGGTGTTTTGCCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCCATGGCCTGTCCTGAATGTGTCTGTCACATGGTGTTTTGCCA  1094

seq1  GTAGATAACTGTGACAAGGTCTTATTCGCAGTGACATTAATTAGAGCGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAACTGTGACAAGGTCTTATTCGCAGTGACATTAATTAGAGCGGC  1144

seq1  TCATTTCATTCTGTAAGAATTC  1164
      ||||||||||||||||||||||
seq2  TCATTTCATTCTGTAAGAATTC  1166

seq1: chr18_85673071_85674158
seq2: B6Ng01-159D18.g_154_1204

seq1  TTACAAAGAACAGAGCTAGAATAACTCAGGGCTAGTCTGTAGAGTGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGAACAGAGCTAGAATAACTCAGGGCTAGTCTGTAGAGTGATTA  50

seq1  CTTAGGACAGTAGCCAGTCTCACCCAAACAAGGGAATACACAATGGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACAGTAGCCAGTCTCACCCAAACAAGGGAATACACAATGGCCTA  100

seq1  GTGAATAGGTGGGTTTTGCCATGAAAGAGTTAGGGATTCCCCCTGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGGTGGGTTTTGCCATGAAAGAGTTAGGGATTCCCCCTGAGACA  150

seq1  GGTTTCTTTACTAGGCCCAAAGAAACAGCATAATCAAGCATTTACTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTACTAGGCCCAAAGAAACAGCATAATCAAGCATTTACTAAGA  200

seq1  ACCTCTGCTGGTGGGCTTAACAATAGACTAGCTTTATACCTGGTGGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTGGTGGGCTTAACAATAGACTAGCTTTATACCTGGTGGCAGT  250

seq1  GGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGTCCCCACCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTC  300

seq1  ACTGTAACTCAGCAGATGTATCTCGCCTGGTTTCTTGTCACTCTTCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACTCAGCAGATGTATCTCGCCTGGTTTCTTGTCACTCTTCTGTA  350

seq1  TAAAAAGTATGATCTCGACTTGAAAAATTACATTCAGATTCTACACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTATGATCTCGACTTGAAAAATTACATTCAGATTCTACACAATC  400

seq1  TCTCGTGTGATTCTGTCTGTCATTCATTTGCTGACTCCTTGTCCACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGTGATTCTGTCTGTCATTCATTTGCTGACTCCTTGTCCACCTGC  450

seq1  AACCAGAGACTGGTTCTATGCAGACAGGGACCAAAAGGATCTGTGGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGACTGGTTCTATGCAGACAGGGACCAAAAGGATCTGTGGCAAG  500

seq1  CCATGCTATCTCTGAAGTCTGAGCCACTTGGACTCCATCACAGCACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTATCTCTGAAGTCTGAGCCACTTGGACTCCATCACAGCACAGAC  550

seq1  CTTTACCCTCTTCAGTATCTCAATATTAAATCAGAACCCTGTGGAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCTCTTCAGTATCTCAATATTAAATCAGAACCCTGTGGAGACAC  600

seq1  TGTGGCCATATTTGTTTATTTTTACATGCCTTTCAGCATATATTTGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTGGCCATATTTGTTTATTTTTACATGCCTTTCAGCATATATTTGTTC-  649

seq1  ATGAATGGTGCTCAG-TAATTATTAGAGAATTAACAATTATGCTATCATA  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTGCTCAGTTAATTATTAGAGAATTAACAATTATGCTATCATA  699

seq1  CTTTGGAAAACATTATCTTAATATAAAATATTAACTTCAGTTAAGGACTA  749
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CTTTGGAAAACATTATC-TAATATAAAATATTAACTTCAGTTAA-GACTA  747

seq1  AATATTGTTGCTTCCCAAGCTAAGATAATTTGCA-CTCATGAATGTAATG  798
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  AATATTGTTGCTTCCCAAGCTAAGATAATTTGCACCTCATGATTGTAATG  797

seq1  ATAATGGGTGGTACAGGCCAAACTTCCAAAATTCTTCAGAGGAAACACAC  848
      ||||||||||||||||||||||||  | ||||||||||||||||||||||
seq2  ATAATGGGTGGTACAGGCCAAACT--CCAAATTCTTCAGAGGAAACACAC  845

seq1  ATATAACCTTTCTTCCAAATTAAGCCAATACATTAAAAGTGCCAGAGGTC  898
      |||| ||| ||||| ||||||||||| ||||||| |||||| |||| |||
seq2  ATAT-ACCCTTCTT-CAAATTAAGCC-ATACATT-AAAGTG-CAGA-GTC  889

seq1  TTTTTTGACCTCACAGTGGCATATAACCTACCAACACAGGGATTACTAAG  948
       |||||||||||| |||||| ||| ||||| | || ||||   |||||||
seq2  -TTTTTGACCTCA-AGTGGC-TAT-ACCTA-CTACCCAGG--ATACTAAG  932

seq1  GTCCTAGACTCTGTTCTTATGGAATTGTGATAAATGAACTTCTCCTTAAT  998
         |||||||||| |||||  | |||| ||| |||||    |||||  ||
seq2  --TCTAGACTCTG-TCTTA--GGATTGGGAT-AATGA---CCTCCTCTAT  973

seq1  AAAGAGGAAACCACATTTCCTTTTGTTTGGGATATTTAAAGATCAAATAT  1048
       | |||||   | ||||||| |||||||||   |||||||||||||| ||
seq2  TAGGAGGA---CCCATTTCC-TTTGTTTGG--AATTTAAAGATCAAA-AT  1016

seq1  TACAGTGACTATTCAAGAAAAACTGTGGGAACCTGGAATT  1088
      |||| |||| |||| ||   |||||  |||||||||||||
seq2  TACA-TGACCATTCGAG---AACTG-CGGAACCTGGAATT  1051