BAC Information

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BAC

Clone NameB6Ng01-160J02
Chromosome18 (Build37)
Map Location 46,598,124 - 46,599,237
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
Downstream geneMospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J02.bB6Ng01-160J02.g
ACCDH953907DH953908
length1,1751,112
definitionDH953907|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J02, 5' end.DH953908|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagatgtaaaacatctgcaggtggcacaaatcacactcctccta
gagcaccaggcagtcagtgaccatggacaaactaacgcagccccatatcc
cacaccgaggatgaaaacaaaaaaccactcacataatagaactggatttg
taaagaaaccaaaattctcactacatttcccccttttagtgcgaaagatg
gctttttctctaacatcaatcaactatatacaataagaacaattatgaga
gccatcaggtaacagttatatttataatgttcagtccttttgtattcgac
aactgtggagaaagtactccactatctatcctatcttggtgagtccaaag
ttctgcacctaaatgactttgttcttataacttgcatttatcaacctaaa
aacatcttttcagatctcaaaacattttcttagatcctaaacaacttaag
cttttatgtctttagtctctaataaggaaaactgttaagacagtagttaa
ccagtcttcaactccatccgagacctgaaaagaataattacctgaataaa
caggaaggacagagcaagcagcttccaaaacaatagaaatgacagactgc
tggctccctgctcagtcatccaaggttgctctctattggtgggataactg
atcttcagccagcacgcccagaatatctgacagacctatctgtgatgcag
gaattttgaaagacttctcccttgtctctgcaaagttggacaagtgactt
tccaatgtcctgcttgtccacagtttggacagcatgttgtcagcagtcaa
ggtaaggagggcagttctttacccagtggccatctttgcctcaaatgaag
caagctccaggtagattcttcagtgcctattgtcttctttgaagtggttc
tgtcaaaagcttaaatgccataatctgcagctctctgaagtcttgagggc
tgtgttctactaaagtacgtctgatagaaaacgttagtccttggtcaaag
cactgtgtagctatgaatccctcagaaaactcatacactaaagacatttt
taaagatctaaatagattgttctatcattaggcaatcgagatagatgagc
aagatcatgtcttagtttagatcaattcttgccaaacctctgacaccaga
ccagtcggtgaacaatagtggtata
gaattccagccaaatgtcctggaagagatgtcccatggtagagatgtcag
tacatccttcccgcccggctggcagggacaacctgattggattaaatggg
agcatttaacccataaatacagttcaaaccacaagtggctattgaaaaat
ctaaccctctcgtcactatctcatccatcctactttctactgatgacaag
aaccacacaccctgacactgtgcagcgggtttaatgatctcacctggccg
tccttgcagggaaacagataacatacacagaagctctttccgaactgtaa
accattcttcaaacgttagagttactgatgttgagagccatgtgtggcca
aaacactgtaaactatggttccagcaagagagagagagcaaaaagtaggt
tatgagaaactgagtcacataggcaagagagggcgatcctgtggcttgtg
gtggtaaacgagccagcctgttctacacactgcagacaggctggaccacg
agaaatccacatgccctttcaccaacaccgcttggactttgataagtttc
taacccagggaaggacatcctgtttcttgggggttggaggctgactcatt
ttcctatataataaagcacaaaggctgttgggagccgcccccacattcgc
cgttacaagatggcgctgacatcctgtgttctaagtggtaaacaaataat
ctgcgcatgtgtcaagggtatcttatgactacttgtgctctgccttcccc
gtgacgtcaactcggccgatgggctgcagccaatcagggagtgacacgtc
cgatgcgaaaggagatgctccttaagagggacggggtttcgtctttctct
ctcttgcttttctcgctctcttgcttttctcgctctcttgcttttctcgc
tctcttgcttttctctctctcttgcttttctctctctcttgcttcttgct
ctcttgcttcttgcactctgtctgaagatgtaagaataaagctttgccgc
aaagattctggtctgtggtgttcttcctggccggtcgtgaagaacgcgtc
taataacatttggtgccgaattccgggacgaagaaaaaaaaactccggac
tgggcgcaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_46598124_46599237
seq2: B6Ng01-160J02.g_68_1179

seq1  GAATTCCAGCCAAATGTCCTGGAAGAGATGTCCCATGGTAGAGATGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCAAATGTCCTGGAAGAGATGTCCCATGGTAGAGATGTCAG  50

seq1  TACATCCTTCCCGCCCGGCTGGCAGGGACAACCTGATTGGATTAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTTCCCGCCCGGCTGGCAGGGACAACCTGATTGGATTAAATGGG  100

seq1  AGCATTTAACCCATAAATACAGTTCAAACCACAAGTGGCTATTGAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAACCCATAAATACAGTTCAAACCACAAGTGGCTATTGAAAAAT  150

seq1  CTAACCCTCTCGTCACTATCTCATCCATCCTACTTTCTACTGATGACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCTCTCGTCACTATCTCATCCATCCTACTTTCTACTGATGACAAG  200

seq1  AACCACACACCCTGACACTGTGCAGCGGGTTTAATGATCTCACCTGGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACACCCTGACACTGTGCAGCGGGTTTAATGATCTCACCTGGCCG  250

seq1  TCCTTGCAGGGAAACAGATAACATACACAGAAGCTCTTTCCGAACTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAGGGAAACAGATAACATACACAGAAGCTCTTTCCGAACTGTAA  300

seq1  ACCATTCTTCAAACGTTAGAGTTACTGATGTTGAGAGCCATGTGTGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTTCAAACGTTAGAGTTACTGATGTTGAGAGCCATGTGTGGCCA  350

seq1  AAACACTGTAAACTATGGTTCCAGCAAGAGAGAGAGAGCAAAAAGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGTAAACTATGGTTCCAGCAAGAGAGAGAGAGCAAAAAGTAGGT  400

seq1  TATGAGAAACTGAGTCACATAGGCAAGAGAGGGCGATCCTGTGGCTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAACTGAGTCACATAGGCAAGAGAGGGCGATCCTGTGGCTTGTG  450

seq1  GTGGTAAACGAGCCAGCCTGTTCTACACACTGCAGACAGGCTGGACCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAACGAGCCAGCCTGTTCTACACACTGCAGACAGGCTGGACCACG  500

seq1  AGAAATCCACATGCCCTTTCACCAACACCGCTTGGACTTTGATAAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACATGCCCTTTCACCAACACCGCTTGGACTTTGATAAGTTTC  550

seq1  TAACCCAGGGAAGGACATCCTGTTTCTTGGGGGTTGGAGGCTGACTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGGGAAGGACATCCTGTTTCTTGGGGGTTGGAGGCTGACTCATT  600

seq1  TTCCTATATAATAAAGCACAAAGGCTGTTGGGAGCCGCCCCCACATTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATATAATAAAGCACAAAGGCTGTTGGGAGCCGCCCCCACATTCGC  650

seq1  CGTTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAAT  700

seq1  CTGCGCATGTGTCAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCATGTGTCAAGGGTATCTTATGACTACTTGTGCTCTGCCTTCCCC  750

seq1  GTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTC  800

seq1  CGAGGCG-AAGGAGAATGCTCCTTAAGAGGGACGGGGTTTCGTCTTTTCT  849
      ||| ||| |||||| ||||||||||||||||||||||||||||| |||||
seq2  CGATGCGAAAGGAG-ATGCTCCTTAAGAGGGACGGGGTTTCGTC-TTTCT  848

seq1  CTCTCTTGCTTTTCTCGCTCTCTTGCTTTTCTCGCTCTCTTGCTTTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGCTTTTCTCGCTCTCTTGCTTTTCTCGCTCTCTTGCTTTTCTC  898

seq1  GCTCTCTTGCTTTTCTCTCTCTCTTGCTTTTCTCTCTCTCTTGCTTCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGCTTTTCTCTCTCTCTTGCTTTTCTCTCTCTCTTGCTTCTTG  948

seq1  CTCTCTTGCTTCTTGCACTCTGTTCCTGAAGATGTAAGAATAAAGCTTTG  999
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CTCTCTTGCTTCTTGCACTCTGT--CTGAAGATGTAAGAATAAAGCTTTG  996

seq1  CCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTG-AGAAC  1048
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  CCGCA-AAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAAGAAC  1045

seq1  GCGTCTAATAACAATTGGTGCCGAATTCCGGGACG-AGAAAAAAAAACTC  1097
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GCGTCTAATAACATTTGGTGCCGAATTCCGGGACGAAGAAAAAAAAACTC  1095

seq1  GGGACT-GGCGCAAGGAG  1114
       ||||| ||||| |||||
seq2  CGGACTGGGCGC-AGGAG  1112