BAC Information

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BAC

Clone NameB6Ng01-161A14
Chromosome18 (Build37)
Map Location 81,175,182 - 81,348,842
singlet/doubletdoublet
Overlap geneSall3, LOC665124
Upstream geneLOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b
Downstream geneLOC100039458, LOC100040871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161A14.bB6Ng01-161A14.g
ACCDH954260DH954261
length1,1271,114
definitionDH954260|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A14, 5' end.DH954261|Mus musculus domesticus DNA, BAC clone: B6Ng01-161A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,347,675 - 81,348,842)(81,175,182 - 81,176,310)
sequence
gaattctcacccagcagatgttgtaagcccgctggctactgctagcattc
cctgcccttggttcttttccttctttgagaaaatgatttaatcagcttgt
agttctcctcgggactgactaattttggcatcagtcagtctgggcccctg
ctttcattgtttaaagaccatgactaaactggactgagccaaattgtact
acagtgtgaaaatttactgttgctctgtcttcgcaaagcatcatctccat
caaccagcacaaacctcctgatctctcgggatatttcaaagacagtgtta
attgtccctagggtattaactggaacctagctctgtgtccccatacccag
aaagtacagtattcacatggtttctctagaaaaaaaaaaacaaaaaacaa
aaaaacaagtataatgtcagtcgggacagggcgggccccagtggtcacac
actccactgcccttgtccagctaggggataagttgtactgagagggacca
tttcaacatctcctaggatgcatagatctcttcccgtaggttgtggacag
tggcagtctttgtcttctctgacagagcctaaacaggacaaatacatgtc
cgtcacaaataaacaagagagtcctgggttctagtttatacaaagttaca
aagtgttgcttgctcagaatacttctcagaagagacttctcggtggcaac
aatgtaactatcaaagcctatggagcccacacacacccactcccagggcc
agacagtctagctagcttgacttcctcggtcaactgtaatcatttccctg
ctaccttgttacataggctgagacccacccctttggtcccagcatctgag
tttggaggctgccctggaattactgtgtctggaatctaagtcccgcactt
ctgtctgtgacaggagctgggactgtatagagtgaggaaagctcttttct
tgggttttactgtgctctttctgatgactctctcggcactcagtcacagc
aaacttagtacattctatgtctaggtagagagccaaagaaaactagaggc
tgtgactctaatgtgctccacgaaccccacagagaaccaagctcagaccc
tttctggtgtagatcggattaacttac
gaattctacagagtgccagagaaattacattagagcctgcttctgagcac
aggcatgcataacactgtctatgtgcgcagttgacactgttatgtgtttc
ctgtgggagagaacccaggtgggtgtcctggctgctttatattttaccat
gttgctgctactggcctttaactgctatcctgtaaagccaagattgtatt
attcaaccatgtttcacttaagcttacagtctgaactggccaccatgcta
aaaaagtaaaagttattaacttactagttaatactacttaaaatttttat
ttatggggaaccatagtcagagagtgacactcttcaaaaggacaacgaca
acaaaaaaatctttaagaaatgtattggcaattcaagtttttattctttc
tctttctctctctctttcctttctttttgaggagaggacttaaaaacaag
cattctaatcagcctcatttgtgtcaaagtcatttatatattttttacct
agtggttgttcaacagctaagatttgaaactcactaggcagggattaagc
aggcgttttatagcacttcactataaaggttacagacactcatacgatac
agggagagaaaatgctaagcagttgaccaactaattcatctgggtgttgg
atcttccagaagggcctcctccttcctagttggcagaccagctggtgaca
ctggctatcaggtcaagataccaagaggaccacacagtcttcactatcct
gggaagtcaggcatctgcactggaggaggcaataaataaataaatagata
ttaataatctggggttgatttgttgtcctccttgcacttggggttcctga
ctccatcttgagtacagccatgttttgttggctggcagagaaggatgagc
ccacagccctcagaggagccacaaggtacctagctacctgcacacctagc
tagctgcacggcactcgtttaagtcttcttggtcacagataaaacagtgt
gtttagtaggacccgcctctccgccacccagtgagtcctctgctttccct
ctgtagcttgtgaaatggccccatgcctctcctctgtcttcaaacggaca
gtctgtttcaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_81347675_81348842
seq2: B6Ng01-161A14.b_48_1174 (reverse)

seq1  GTAAGTTAACTCAGATACTACACCAGGAGAAGGGTTTCCTGAGCCTTGGG  50
      ||||||||| || ||| |||||||||   ||||||   |||||| |   |
seq2  GTAAGTTAA-TCCGAT-CTACACCAG--AAAGGGT---CTGAGCTT---G  40

seq1  GTTCTTCCTGTGTGTGTTCGTGGGAGCACCATTCTGGGAAGTTTCCACAG  100
      |||||  ||||| | |||||| |||||| ||||      ||  | |||||
seq2  GTTCT--CTGTG-GGGTTCGT-GGAGCA-CATT------AGAGT-CACAG  78

seq1  CCTCTAGTTTTTCTGTGTGCTCTCTACCCTTAGACATTAGAATGTACTAA  150
      ||||||| |||||| || ||||||||||  |||||| |||||||||||||
seq2  CCTCTAG-TTTTCTTTG-GCTCTCTACC--TAGACA-TAGAATGTACTAA  123

seq1  GGTTTTGCTGTGAACCTGAGTGCCGAGAGAGGTCATTCAGAAAAGAGCAC  200
      |  ||||||||||  ||||||||||||||| |||| |||| |||||||||
seq2  G--TTTGCTGTGA--CTGAGTGCCGAGAGA-GTCA-TCAG-AAAGAGCAC  166

seq1  AGTAAAAACCCAAGAAAAGGAGGCTTTCCTCACCTCCTATACAGTCCCAG  250
      ||| |||||||||||||||   |||||||||||   ||||||||||||||
seq2  AGT-AAAACCCAAGAAAAG--AGCTTTCCTCAC--TCTATACAGTCCCAG  211

seq1  CTCCTGTCACAGACAAGAAGTGCGGGACTTAGATTCCAGACACAGTAATT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCACAGAC-AGAAGTGCGGGACTTAGATTCCAGACACAGTAATT  260

seq1  CCAGGGCAGCCTTCCAAACTCAGATGCTGGGACCAAAGGGGTGGGTCTCA  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGCC-TCCAAACTCAGATGCTGGGACCAAAGGGGTGGGTCTCA  309

seq1  GCCTATGTAACAAGGTAGCAGGGAAATGATTACAGTTGACCGAGGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTAACAAGGTAGCAGGGAAATGATTACAGTTGACCGAGGAAGTC  359

seq1  AAGCTAGCTAGACTGTCTGGCCCTGGGAGTGGGTGTGTGTGGGCTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCTAGACTGTCTGGCCCTGGGAGTGGGTGTGTGTGGGCTCCATA  409

seq1  GGCTTTGATAGTTACATTGTTGCCACCGAGAAGTCTCTTCTGAGAAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGATAGTTACATTGTTGCCACCGAGAAGTCTCTTCTGAGAAGTAT  459

seq1  TCTGAGCAAGCAACACTTTGTAACTTTGTATAAACTAGAACCCAGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAGCAACACTTTGTAACTTTGTATAAACTAGAACCCAGGACTC  509

seq1  TCTTGTTTATTTGTGACGGACATGTATTTGTCCTGTTTAGGCTCTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTATTTGTGACGGACATGTATTTGTCCTGTTTAGGCTCTGTCAG  559

seq1  AGAAGACAAAGACTGCCACTGTCCACAACCTACGGGAAGAGATCTATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAAGACTGCCACTGTCCACAACCTACGGGAAGAGATCTATGCA  609

seq1  TCCTAGGAGATGTTGAAATGGTCCCTCTCAGTACAACTTATCCCCTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAGATGTTGAAATGGTCCCTCTCAGTACAACTTATCCCCTAGCT  659

seq1  GGACAAGGGCAGTGGAGTGTGTGACCACTGGGGCCCGCCCTGTCCCGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGGCAGTGGAGTGTGTGACCACTGGGGCCCGCCCTGTCCCGACT  709

seq1  GACATTATACTTGTTTTTTTGTTTTTTGTTTTTTTTTTTCTAGAGAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATACTTGTTTTTTTGTTTTTTGTTTTTTTTTTTCTAGAGAAACC  759

seq1  ATGTGAATACTGTACTTTCTGGGTATGGGGACACAGAGCTAGGTTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATACTGTACTTTCTGGGTATGGGGACACAGAGCTAGGTTCCAGT  809

seq1  TAATACCCTAGGGACAATTAACACTGTCTTTGAAATATCCCGAGAGATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCCTAGGGACAATTAACACTGTCTTTGAAATATCCCGAGAGATCA  859

seq1  GGAGGTTTGTGCTGGTTGATGGAGATGATGCTTTGCGAAGACAGAGCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTGTGCTGGTTGATGGAGATGATGCTTTGCGAAGACAGAGCAAC  909

seq1  AGTAAATTTTCACACTGTAGTACAATTTGGCTCAGTCCAGTTTAGTCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTTCACACTGTAGTACAATTTGGCTCAGTCCAGTTTAGTCATG  959

seq1  GTCTTTAAACAATGAAAGCAGGGGCCCAGACTGACTGATGCCAAAATTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAACAATGAAAGCAGGGGCCCAGACTGACTGATGCCAAAATTAG  1009

seq1  TCAGTCCCGAGGAGAACTACAAGCTGATTAAATCATTTTCTCAAAGAAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCGAGGAGAACTACAAGCTGATTAAATCATTTTCTCAAAGAAGG  1059

seq1  AAAAGAACCAAGGGCAGGGAATGCTAGCAGTAGCCAGCGGGCTTACAACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCAAGGGCAGGGAATGCTAGCAGTAGCCAGCGGGCTTACAACA  1109

seq1  TCTGCTGGGTGAGAATTC  1168
      ||||||||||||||||||
seq2  TCTGCTGGGTGAGAATTC  1127

seq1: chr18_81175182_81176310
seq2: B6Ng01-161A14.g_69_1182

seq1  GAATTCTACAGAGTGCCAGAGAAATTACATTAGAGCCTGCTTCTGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAGTGCCAGAGAAATTACATTAGAGCCTGCTTCTGAGCAC  50

seq1  AGGCATGCATAACACTGTCTATGTGCGCAGTTGACACTGTTATGTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCATAACACTGTCTATGTGCGCAGTTGACACTGTTATGTGTTTC  100

seq1  CTGTGGGAGAGAACCCAGGTGGGTGTCCTGGCTGCTTTATATTTTACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAGAGAACCCAGGTGGGTGTCCTGGCTGCTTTATATTTTACCAT  150

seq1  GTTGCTGCTACTGGCCTTTAACTGCTATCCTGTAAAGCCAAGATTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGCTACTGGCCTTTAACTGCTATCCTGTAAAGCCAAGATTGTATT  200

seq1  ATTCAACCATGTTTCACTTAAGCTTACAGTCTGAACTGGCCACCATGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCATGTTTCACTTAAGCTTACAGTCTGAACTGGCCACCATGCTA  250

seq1  AAAAAGTAAAAGTTATTAACTTACTAGTTAATACTACTTAAAATTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAAGTTATTAACTTACTAGTTAATACTACTTAAAATTTTTAT  300

seq1  TTATGGGGAACCATAGTCAGAGAGTGACACTCTTCAAAAGGACAACGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGAACCATAGTCAGAGAGTGACACTCTTCAAAAGGACAACGACA  350

seq1  ACAAAAAAATCTTTAAGAAATGTATTGGCAATTCAAGTTTTTATTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAATCTTTAAGAAATGTATTGGCAATTCAAGTTTTTATTCTTTC  400

seq1  TCTTTCTCTCTCTCTTTCCTTTCTTTTTGAGGAGAGGACTTAAAAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCTCTCTTTCCTTTCTTTTTGAGGAGAGGACTTAAAAACAAG  450

seq1  CATTCTAATCAGCCTCATTTGTGTCAAAGTCATTTATATATTTTTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAATCAGCCTCATTTGTGTCAAAGTCATTTATATATTTTTTACCT  500

seq1  AGTGGTTGTTCAACAGCTAAGATTTGAAACTCACTAGGCAGGGATTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGTTCAACAGCTAAGATTTGAAACTCACTAGGCAGGGATTAAGC  550

seq1  AGGCGTTTTATAGCACTTCACTATAAAGGTTACAGACACTCATACGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTTTTATAGCACTTCACTATAAAGGTTACAGACACTCATACGATAC  600

seq1  AGGGAGAGAAAATGCTAAGCAGTTGACCAACTAATTCATCTGGGTGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAAAATGCTAAGCAGTTGACCAACTAATTCATCTGGGTGTTGG  650

seq1  ATCTTCCAGAAGGGCCTCCTCCTTCCTAGTTGGCAGACCAGCTGGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGAAGGGCCTCCTCCTTCCTAGTTGGCAGACCAGCTGGTGACA  700

seq1  CTGGCTATCAGGTCAAGATACCAAGAGGACCACACAGTCTTCACTATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATCAGGTCAAGATACCAAGAGGACCACACAGTCTTCACTATCCT  750

seq1  GGGAAGTCAGGCATCTGCACTGGAGGAGGCAATAAATAAATAAATAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGAAGTCAGGCATCTGCACTGGAGGAGGCAATAAATAAATAAAT-AGAT  799

seq1  ATTAAATAAATCTGGGGTTGATTTGTTGTCCTCCTTGCACTTGGGGTTCC  850
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAA--TAATCTGGGGTTGATTTGTTGTCCTCCTTGCACTTGGGGTTCC  847

seq1  TGACTCCATCTTGAGTAACAGCCATGTTT--GTGGCTGGCAGAGAAGGAG  898
      |||||||||||||||| ||||||||||||   ||||||||||||||||| 
seq2  TGACTCCATCTTGAGT-ACAGCCATGTTTTGTTGGCTGGCAGAGAAGGAT  896

seq1  AAGGCCCACAGCCCCTCAGAGGAAGCCACAAGGTACCTAGCTACCTGCAC  948
       | |||||||| |||||||||| |||||||||||||||||||||||||||
seq2  GA-GCCCACAG-CCCTCAGAGG-AGCCACAAGGTACCTAGCTACCTGCAC  943

seq1  ACCTAGCTAGCTGCACGGCACTCGGTTTAAAAGTCTTCTTGTGTTCACAG  998
      |||||||||||||||||||||||| ||   |||||||||  || ||||||
seq2  ACCTAGCTAGCTGCACGGCACTCGTTT---AAGTCTTCT--TGGTCACAG  988

seq1  ATAAAACAGTGTGTTTAGTAAGAACCCGCCTCT-CGCACCCCAGTGAGTC  1047
      ||||||||||||||||||| || |||||||||| |||  |||||||||||
seq2  ATAAAACAGTGTGTTTAGT-AGGACCCGCCTCTCCGCCACCCAGTGAGTC  1037

seq1  TCTTGCTTTCACTTCTGGTTAGCTGTGGAAAATGGCACCATG-CTCT-CT  1095
         ||||||| | ||||  ||||| ||  ||||||| ||||| |||| ||
seq2  CTCTGCTTTC-CCTCTG--TAGCT-TGTGAAATGGCCCCATGCCTCTCCT  1083

seq1  CTGTCTTCCAGAGCGTGACAGTCTGTTTCAAGCC  1129
      |||||||| |  |   ||||||||||||||||||
seq2  CTGTCTTCAAACG---GACAGTCTGTTTCAAGCC  1114