BAC Information

Click to search

BAC

Clone NameB6Ng01-161H08
Chromosome18 (Build37)
Map Location 76,983,654 - 77,113,024
singlet/doubletdoublet
Overlap geneEG664805
Upstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
Downstream geneLOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H08.bB6Ng01-161H08.g
ACCDH954562DH954563
length1,0951,089
definitionDH954562|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H08, 5' end.DH954563|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,111,920 - 77,113,024)(76,983,654 - 76,984,763)
sequence
gaattccaacagagaagggcaagcaggttggtccacacctcggagcgtcc
tcactggtggtgagagactttctcaatctaaccttcagggaatgacttag
agaagtgagagtgcttccaggagcatgctcttaccatgtggtggattggg
ctttttgattcattaatatttttggagaactgtttatcttatgttacatt
tcaattggatgaatacactaaaaataaagatatataaaactgtcattcct
ttcctctttgtaattactaacactatatgcacagagcacccctaaaacaa
tagctggtaaatggaaacagaccgactgcaggaaaatctactggtgacgt
taacaatgggctgctcttttcaccagccctggaggttttattaacatctt
gcatagtgtctattacaaataagacgttttgctgtgatttctgagcaaaa
ataggcaatgtagaacttagaagatatgaacgttcccttctcactgagga
atttttctttcagtctaagtgtcaggtaaataaggtcacagaagcagtct
cagctgtgctctgtgtgtctcttactggactgccactttctgcattcttg
ctaatctgtgggatccagattgttaatggtagttaaaaatgacctctggg
agcctggatgtttgttcactattactgctaatgttttccatctgtttttt
ttttttaagaggcagtctaatactagatgaaataaatgtgatttagttga
caatgagcttccaattttgactagtattccgtcaggttgactaatgttcc
gtccgttagatgcgtttcacttcttaaaatgaacagctttggaggcatcc
ccaattaaagtgctcaccttctttcccttatgttcttctttttaaaaaaa
tatttacaagcagagagggtgggggaaatttagagatctcattgcttaga
gggcagaaacagtatgcacgggagaattgtctttcttagaggcctggcct
caaacacgtcgtcagagttaaagaaaacagagtgctttggagtgggaaga
aatgataacctgagtggtagtgcaatggggccaggataggggata
gaattccagagtcttatgatgaggaagcgaaggcatgctggcaggagcag
gaagctgagcgctcatatcttaaactgcatgccccaaacacaaaggatgg
ccatgcagttccctacgcagtggtcaatgagtggtctgaagttctgtgcg
tctctgaaatgcatacgttgcagcctaatcgttgaggtgatgatcttgaa
aagtgagtgctttgagagataactcacttatctggtggaacccttttaaa
gtatttccccagcaacaggacagcaagaatgagggcataaagagcaaaga
gaaaaagcttctttcttctatgtccttttatattggttgccaccagaagg
agtggcctaattttaaggtggtccttccaaccttaaattatccaatcaag
agaatccctcaaaggtgtgtccagctacttaggtcttaattaattccaga
ttaagtcaatcaagaatagctatcactagtagtatggactgaggcagctt
cagcaagttttccttgtgtcacctcattgattatttcaaattgaaaacaa
aaagttcaatggcatcaagaggaagacagatccctacactacacctccac
cctgggaggccaccactatgtctccttggaaacaacccttcctctcctta
atgtttctgctacagcctttcttatggatacagttctactccgactgtct
ttctcctaaagtaggaagtgggaatggaagcctgtgcttgtccatgggcc
attccaagtctacttgggagatcttaagattcacaaacatgaacattggc
cttacagtatcatgtgggggaggagggacttacaaaaccccaaatatttc
ctgctatcctaaatccaagtgtctcattagcatctgcaatgcaggccttt
gagtaactgccgtgggtttgtcataaaaacatttacttatattgtcagtc
aaacgaagcagatctgaacgtgtgaggccttctagtgtaaggaaatcctg
cagctcagaaatgactatgtagtgtttttggttcagctacaaaaggagtt
agagaactggagttcgtggcaatttatgcaccacatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_77111920_77113024
seq2: B6Ng01-161H08.b_46_1140 (reverse)

seq1  TATCCCCCTTCCCCTGCCCCCA-TGCACTTACACTCAGGTTATTCATTTC  49
      |||||||  |  |||| ||||| ||||||  ||||||||||| |||||||
seq2  TATCCCC--TATCCTGGCCCCATTGCACTACCACTCAGGTTA-TCATTTC  47

seq1  TTTCCCACTCCAAACCACTTCTGTTTTCTTTTACCTTCTGACGGACGTGT  99
       ||||||||||||| ||| |||||||||||| ||  |||||| |||||||
seq2  -TTCCCACTCCAAAGCAC-TCTGTTTTCTTTAAC--TCTGAC-GACGTGT  92

seq1  TTGAGGCCAGGCCTCTAAGAAAGACATTCCTCCCGTGCATACTGTTTTCT  149
      |||||||||||||||||||||||||| | ||||||||||||||| |||||
seq2  TTGAGGCCAGGCCTCTAAGAAAGACAATTCTCCCGTGCATACTG-TTTCT  141

seq1  G-CCTCTAAGCAACTGAGATCTCTAAATTTCCCCCACCCTCTCTGCTTGT  198
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTAAGCAA-TGAGATCTCTAAATTTCCCCCACCCTCTCTGCTTGT  190

seq1  AAATATTTTTTTTAAAAAAGAAGAACATAAGGGAAAGAAGGTGAGCACTT  248
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTTT--AAAAAGAAGAACATAAGGGAAAGAAGGTGAGCACTT  238

seq1  TAATTTGGGGATGCCTCCAAAGCTGTTCATTTTAAGAAGTGAAACGCATC  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAA-TTGGGGATGCCTCCAAAGCTGTTCATTTTAAGAAGTGAAACGCATC  287

seq1  TAACGGACGGAACATTAGTCAACCTGACGGAATACTAGTCAAAATTGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGACGGAACATTAGTCAACCTGACGGAATACTAGTCAAAATTGGAA  337

seq1  GCTCATTGTCAACTAAATCACATTTATTTCATCTAGTATTAGACTGCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGTCAACTAAATCACATTTATTTCATCTAGTATTAGACTGCCTC  387

seq1  TT-AAAAAAAAAAACAGATGGAAAACATTAGCAGTAATAGTGAACAAACA  447
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAACAGATGGAAAACATTAGCAGTAATAGTGAACAAACA  437

seq1  TCCAGGCTCCCAGAGGTCATTTTTAACTACCATTAACAATCTGGATCCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCCCAGAGGTCATTTTTAACTACCATTAACAATCTGGATCCCA  487

seq1  CAGATTAGCAAGAATGCAGAAAGTGGCAGTCCAGTAAGAGACACACAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAGCAAGAATGCAGAAAGTGGCAGTCCAGTAAGAGACACACAGAG  537

seq1  CACAGCTGAGACTGCTTCTGTGACCTTATTTACCTGACACTTAGACTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGAGACTGCTTCTGTGACCTTATTTACCTGACACTTAGACTGAA  587

seq1  AGAAAAATTCCTCAGTGAGAAGGGAACGTTCATATCTTCTAAGTTCTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTCCTCAGTGAGAAGGGAACGTTCATATCTTCTAAGTTCTACA  637

seq1  TTGCCTATTTTTGCTCAGAAATCACAGCAAAACGTCTTATTTGTAATAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTTTTGCTCAGAAATCACAGCAAAACGTCTTATTTGTAATAGA  687

seq1  CACTATGCAAGATGTTAATAAAACCTCCAGGGCTGGTGAAAAGAGCAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCAAGATGTTAATAAAACCTCCAGGGCTGGTGAAAAGAGCAGCC  737

seq1  CATTGTTAACGTCACCAGTAGATTTTCCTGCAGTCGGTCTGTTTCCATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAACGTCACCAGTAGATTTTCCTGCAGTCGGTCTGTTTCCATTT  787

seq1  ACCAGCTATTGTTTTAGGGGTGCTCTGTGCATATAGTGTTAGTAATTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTATTGTTTTAGGGGTGCTCTGTGCATATAGTGTTAGTAATTACA  837

seq1  AAGAGGAAAGGAATGACAGTTTTATATATCTTTATTTTTAGTGTATTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAGGAATGACAGTTTTATATATCTTTATTTTTAGTGTATTCAT  887

seq1  CCAATTGAAATGTAACATAAGATAAACAGTTCTCCAAAAATATTAATGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGAAATGTAACATAAGATAAACAGTTCTCCAAAAATATTAATGAA  937

seq1  TCAAAAAGCCCAATCCACCACATGGTAAGAGCATGCTCCTGGAAGCACTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGCCCAATCCACCACATGGTAAGAGCATGCTCCTGGAAGCACTC  987

seq1  TCACTTCTCTAAGTCATTCCCTGAAGGTTAGATTGAGAAAGTCTCTCACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCTAAGTCATTCCCTGAAGGTTAGATTGAGAAAGTCTCTCACC  1037

seq1  ACCAGTGAGGACGCTCCGAGGTGTGGACCAACCTGCTTGCCCTTCTCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGAGGACGCTCCGAGGTGTGGACCAACCTGCTTGCCCTTCTCTGT  1087

seq1  TGGAATTC  1105
      ||||||||
seq2  TGGAATTC  1095

seq1: chr18_76983654_76984763
seq2: B6Ng01-161H08.g_69_1157

seq1  GAATTCCAGAGTCTTATGATGAGGAAGCGAAGGCATGCTGGCAGGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTCTTATGATGAGGAAGCGAAGGCATGCTGGCAGGAGCAG  50

seq1  GAAGCTGAGCGCTCATATCTTAAACTGCATGCCCCAAACACAAAGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAGCGCTCATATCTTAAACTGCATGCCCCAAACACAAAGGATGG  100

seq1  CCATGCAGTTCCCTACGCAGTGGTCAATGAGTGGTCTGAAGTTCTGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGTTCCCTACGCAGTGGTCAATGAGTGGTCTGAAGTTCTGTGCG  150

seq1  TCTCTGAAATGCATACGTTGCAGCCTAATCGTTGAGGTGATGATCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAATGCATACGTTGCAGCCTAATCGTTGAGGTGATGATCTTGAA  200

seq1  AAGTGAGTGCTTTGAGAGATAACTCACTTATCTGGTGGAACCCTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTGCTTTGAGAGATAACTCACTTATCTGGTGGAACCCTTTTAAA  250

seq1  GTATTTCCCCAGCAACAGGACAGCAAGAATGAGGGCATAAAGAGCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCCCAGCAACAGGACAGCAAGAATGAGGGCATAAAGAGCAAAGA  300

seq1  GAAAAAGCTTCTTTCTTCTATGTCCTTTTATATTGGTTGCCACCAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTTCTTTCTTCTATGTCCTTTTATATTGGTTGCCACCAGAAGG  350

seq1  AGTGGCCTAATTTTAAGGTGGTCCTTCCAACCTTAAATTATCCAATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTAATTTTAAGGTGGTCCTTCCAACCTTAAATTATCCAATCAAG  400

seq1  AGAATCCCTCAAAGGTGTGTCCAGCTACTTAGGTCTTAATTAATTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCTCAAAGGTGTGTCCAGCTACTTAGGTCTTAATTAATTCCAGA  450

seq1  TTAAGTCAATCAAGAATAGCTATCACTAGTAGTATGGACTGAGGCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCAATCAAGAATAGCTATCACTAGTAGTATGGACTGAGGCAGCTT  500

seq1  CAGCAAGTTTTCCTTGTGTCACCTCATTGATTATTTCAAATTGAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTTTCCTTGTGTCACCTCATTGATTATTTCAAATTGAAAACAA  550

seq1  AAAGTTCAATGGCATCAAGAGGAAGACAGATCCCTACACTACACCTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAATGGCATCAAGAGGAAGACAGATCCCTACACTACACCTCCAC  600

seq1  CCTGGGAGGCCACCACTATGTCTCCTTGGAAACAACCCTTCCTCTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGGCCACCACTATGTCTCCTTGGAAACAACCCTTCCTCTCCTTA  650

seq1  ATGTTTCTGCTACAGCCTTTCTTATGGATACAGTTCTACTCCGACTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTGCTACAGCCTTTCTTATGGATACAGTTCTACTCCGACTGTCT  700

seq1  TTCTCCTAAAGTAGGAAGTGGGAATGGAAGCCTGTGCTTGTCCATGGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAAAGTAGGAAGTGGGAATGGAAGCCTGTGCTTGTCCATGGGCC  750

seq1  ATTCCAAGTCTACTTGGGAGATCTTAAGATTCACAAACATGAACATTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGTCTACTTGGGAGATCTTAAGATTCACAAACATGAACATTGGC  800

seq1  CTTACAGTATCATGTGGGGGAGGAGGGACTTACAAAACCCCAAATATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTATCATGTGGGGGAGGAGGGACTTACAAAACCCCAAATATTTC  850

seq1  CTGCTATCCTAAATCCAAGTGTCTCAATTAGCATCTGCAATGCAGGCCTT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCTATCCTAAATCCAAGTGTCTC-ATTAGCATCTGCAATGCAGGCCTT  899

seq1  TGAGTAACTGCCGTTGGTTTGTTCATAAAAACAATTTACTTATATTGTCA  950
      |||||||||||||| |||||| |||||||||| |||||||||||||||||
seq2  TGAGTAACTGCCGTGGGTTTG-TCATAAAAAC-ATTTACTTATATTGTCA  947

seq1  GTTCAAAACGAAGCAGGATCCTGAACGTGTGAGGCCTTCCTTAGTGTAAA  1000
      ||   |||||||||| ||| |||||||||||||||||||  |||||| ||
seq2  GT--CAAACGAAGCA-GAT-CTGAACGTGTGAGGCCTTC--TAGTGT-AA  990

seq1  GGAAATTCCCTGCAGCTCAGAAATGTACTATGTTAGTGTTTTTGGTTTTC  1050
      ||||||  ||||||||||||||||| |||||| ||||||||||||  |||
seq2  GGAAAT--CCTGCAGCTCAGAAATG-ACTATG-TAGTGTTTTTGG--TTC  1034

seq1  AGCTAACAAAAGAAGTTAGAGACTTGAGAGTCTCGTGGCAATTTTATGCA  1100
      |||| ||||||| |||||||||  || |||| ||||||||| ||||||||
seq2  AGCT-ACAAAAGGAGTTAGAGAACTG-GAGT-TCGTGGCAA-TTTATGCA  1080

seq1  CCAACATGAT  1110
      || |||||||
seq2  CC-ACATGAT  1089