BAC Information

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BAC

Clone NameB6Ng01-162C19
Chromosome18 (Build37)
Map Location 23,241,006 - 23,242,227
singlet/doubletsinglet
Overlap geneLOC100040579
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3, Nol4
Downstream geneLOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C19.bB6Ng01-162C19.g
ACCDH955079DH955080
length1,20896
definitionDH955079|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C19, 5' end.DH955080|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatatattacgcacaaagtatgatcatatttaacccctatttcc
ccctccaactactacagtatctctaccaataaattcacatcctcctcatt
acactccctgcttttttataatccagtaagccccatcctaacttgggagt
tactgacaatttatgatttctggaggaggaggaataattcttctttgaga
gtactgctattggtagattcacatgctccatggatgcccacacccataca
catataggcaatattgaatttgctaattttaatcttattgctgagctgag
aatatgcatgaggctaaggtattgatactgaaaaatctacttccaaatat
atgtacatttatcatttttcttaatactagcttcttcaaagttatttaaa
acaccaacttcttcttattaagagttttgtatttggaaacaattatgtat
atgcttaggaactttttactttatactttgaaatttttatatctcatcac
atcatgattttcataattccaatttcatcatgtagtttttaaataagaat
ctctgtaaaggaatagccatgtaaaattgcattttcgttttaaccaaggt
tctgtttgaggttctttgactaggctttctcctaagacatcccggataag
tagtcggctgtgtcagtgacagatggtagctcttcttcctctccctgcat
ctgtggaatggaataatttgccatcctacatatgtagaaatggtgctgtt
ctggatactcaaagtatttatgtctttcaaattcttgtttgtttgtttgt
accagtttttatattatatatgatggtcaagtacatctcattaggtgaca
atatgagggtccacataaaaacatagcactactttggaatagactatggt
agttgtccagtgacagagcatagtcttaatgttctttttagtagatgaaa
cattttgtcctttggaaagctattttaagacaaagccatgtagataaaat
cttcacttaaaaaaaatgtgtcctccatgattaatagtaacagcttttca
tgagttttgaaataatttgtgctgtactcaatgttaaacaaaagaacagt
ctaaacacatgctataaacaaaaaaacatcaaggtcagctaattaaagct
tccaagaaagaatgatagcctgattgccttggtagaatgcttcatggagt
aaggtgga
cattaacacaaaatttgaagccataatacatacacaaatggcctctagaa
ttaagagagagagaagcagacaggggggaagggagggagggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_23241006_23242227
seq2: B6Ng01-162C19.b_46_1253 (reverse)

seq1  TCCACCTTACTTCCATTGGAAGGCATCTAAAACAAAGTGCACATTCAGCT  50
      |||||||||| |||||  ||||   |||   || ||| ||| ||   |||
seq2  TCCACCTTAC-TCCAT--GAAGCATTCT---ACCAAG-GCA-ATCAGGCT  42

seq1  ATCATCCTTCTTTGGAAAGCTTTAATTTAGCTGCCCTGGATGTTTTTTTG  100
      ||||| |||  |||| ||||||||| ||||||| ||| ||||||||||||
seq2  ATCATTCTTTCTTGG-AAGCTTTAA-TTAGCTGACCTTGATGTTTTTTTG  90

seq1  TTTATTAGCACTGTGTTTAGACTAGTTCTTGTGTTT-ACATTGAGTACAG  149
      |||| ||||| |||||||||||| |||||| ||||| |||||||||||||
seq2  TTTA-TAGCA-TGTGTTTAGACT-GTTCTTTTGTTTAACATTGAGTACAG  137

seq1  CACAAAATTATTTCAAAACTCATGAAAAGCTGTTAACTATTAATCATGGA  199
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAC-AAATTATTTCAAAACTCATGAAAAGCTGTT-ACTATTAATCATGGA  185

seq1  -GACACATTTTTTTTAAGTGAAGATTTTATCTACATGGCTTTGTCTTAAA  248
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGACACATTTTTTTTAAGTGAAGATTTTATCTACATGGCTTTGTCTT-AA  234

seq1  AATAGCTTTCCAAAGGAC-AAATGTTTCATCTACTAAAAAAGAACATTAA  297
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AATAGCTTTCCAAAGGACAAAATGTTTCATCTACT-AAAAAGAACATTAA  283

seq1  GACTATGCTCTGTCACTGGACAACTACCATAGTCTATTCCAAAGTAGTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGCTCTGTCACTGGACAACTACCATAGTCTATTCCAAAGTAGTGC  333

seq1  TATGTTTTTATGTGGACCCTCATATTGTCACCTAATGAGATGTACTTGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTATGTGGACCCTCATATTGTCACCTAATGAGATGTACTTGAC  383

seq1  CATCATATATAATATAAAAACTGGTACAAACAAACAAACAAGAATTTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATATAATATAAAAACTGGTACAAACAAACAAACAAGAATTTGAA  433

seq1  AGACATAAATACTTTGAGTATCCAGAACAGCACCATTTCTACATATGTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAATACTTTGAGTATCCAGAACAGCACCATTTCTACATATGTAG  483

seq1  GATGGCAAATTATTCCATTCCACAGATGCAGGGAGAGGAAGAAGAGCTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAATTATTCCATTCCACAGATGCAGGGAGAGGAAGAAGAGCTAC  533

seq1  CATCTGTCACTGACACAGCCGACTACTTATCCGGGATGTCTTAGGAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCACTGACACAGCCGACTACTTATCCGGGATGTCTTAGGAGAAA  583

seq1  GCCTAGTCAAAGAACCTCAAACAGAACCTTGGTTAAAACGAAAATGCAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCAAAGAACCTCAAACAGAACCTTGGTTAAAACGAAAATGCAAT  633

seq1  TTTACATGGCTATTCCTTTACAGAGATTCTTATTTAAAAACTACATGATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGGCTATTCCTTTACAGAGATTCTTATTTAAAAACTACATGATG  683

seq1  AAATTGGAATTATGAAAATCATGATGTGATGAGATATAAAAATTTCAAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAATTATGAAAATCATGATGTGATGAGATATAAAAATTTCAAAG  733

seq1  TATAAAGTAAAAAGTTCCTAAGCATATACATAATTGTTTCCAAATACAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTAAAAAGTTCCTAAGCATATACATAATTGTTTCCAAATACAAA  783

seq1  ACTCTTAATAAGAAGAAGTTGGTGTTTTAAATAACTTTGAAGAAGCTAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAATAAGAAGAAGTTGGTGTTTTAAATAACTTTGAAGAAGCTAGT  833

seq1  ATTAAGAAAAATGATAAATGTACATATATTTGGAAGTAGATTTTTCAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAAATGATAAATGTACATATATTTGGAAGTAGATTTTTCAGTA  883

seq1  TCAATACCTTAGCCTCATGCATATTCTCAGCTCAGCAATAAGATTAAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCTTAGCCTCATGCATATTCTCAGCTCAGCAATAAGATTAAAAT  933

seq1  TAGCAAATTCAATATTGCCTATATGTGTATGGGTGTGGGCATCCATGGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTCAATATTGCCTATATGTGTATGGGTGTGGGCATCCATGGAG  983

seq1  CATGTGAATCTACCAATAGCAGTACTCTCAAAGAAGAATTATTCCTCCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAATCTACCAATAGCAGTACTCTCAAAGAAGAATTATTCCTCCTC  1033

seq1  CTCCAGAAATCATAAATTGTCAGTAACTCCCAAGTTAGGATGGGGCTTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAATCATAAATTGTCAGTAACTCCCAAGTTAGGATGGGGCTTAC  1083

seq1  TGGATTATAAAAAAGCAGGGAGTGTAATGAGGAGGATGTGAATTTATTGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATAAAAAAGCAGGGAGTGTAATGAGGAGGATGTGAATTTATTGG  1133

seq1  TAGAGATACTGTAGTAGTTGGAGGGGGAAATAGGGGTTAAATATGATCAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATACTGTAGTAGTTGGAGGGGGAAATAGGGGTTAAATATGATCAT  1183

seq1  ACTTTGTGCGTAATATATGGAATTC  1222
      |||||||||||||||||||||||||
seq2  ACTTTGTGCGTAATATATGGAATTC  1208