BAC Information

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BAC

Clone NameB6Ng01-162I11
Chromosome18 (Build37)
Map Location 42,774,820 - 42,947,023
singlet/doubletdoublet
Overlap geneLOC100042037, Ppp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162I11.bB6Ng01-162I11.g
ACCDH955346DH955347
length1,0571,233
definitionDH955346|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I11, 5' end.DH955347|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,945,965 - 42,947,023)(42,774,820 - 42,776,046)
sequence
gaattcactttgtagaccaagctggcctcgaactcagaaatccgcctgcc
tctgcctcctgagtgctgggattaaagcagtgagccaccaccaccgcccg
gctcccccccccccacccccccaggactctcttaaggcttccaatttctc
ttcttccactttctttgcccattgtccttgtcagcatgtcactggcctac
tcagaatctctcaatcacttctccatgcaacataggttaaatctaaggtt
ggacgttttgcaggattgcagtccctggctcctcctcccagatgcccatc
actcttatgccctagcaccctgctaaggctacttcacaaataaaccaaat
aagttgccacttcaggctgtcacaactgtggtttccctccttcaagaact
ctgttcttctgtgtgcatttgtggttggctcatttcttccttcaagtctg
ctcatatgttaatgggcagcagacccatgctgtctgtagcaatcaccact
atctcatcctcggtaatgcaatataaattttcttcatagcttatacaaca
ttagggtatgtatttctgtgtgtgtgtttgcaaatgtatgcatgtgtgtt
tgtgtgtgtgtgcaggtgtatatgtgtctatatgtgtatgtgcatgcatg
tgtatgtgcatgtgtgcatatgcttatgtgtgtttgccagagtgtatgtg
tacatgtgtgtgttcatgtatgtgtgtttgtctgatgtgtgtgcatatga
gtggtccaaagcttgaagaacagtgagaaccctctttccactccactcca
ctctgctccgtggtacttagaagctgacttctacactactcttgatccta
tcatgggtgcttcagatctgatgctgagtaacacagtaaaaagtcaactg
gattagcgttcctaggagtatcctcctgctgttattggaggccctgaaag
tactgattgcttttcctagtggaggttgcaagatgacccagagagtacat
cctgctggagcattccctgaccttcaaattacctaaattgtcccctgata
taagatc
gaattcagaaaaaataactctatcagggttgcatatgaacatgcggcagg
gctggggctcaaccccatgggatggaaggtatcagaatccatcagaggaa
agggacttcaactctgcttgcatttctatcagacatgggaaggatgataa
cagcctgttctgcagaaaagacccaagactaggtttcctctccatgtagc
agaactgccttcgctatcgacttgagatgattaaagtcccctttgtttaa
tccttttcacccatctgaacataccaaagtacctgaagctcgggagtcat
tttgaattaaataccatttttttttgtttgtttgtttcttgaaatctata
gctccaactaaaccaaaaccaaaaccaaaacaaaaccccaaaccaaccga
ctggataaaactattgttagttgaagtcccaagacagaaagcagccacca
tgtgacaaaaaaccagagatgaattccacgcatttattagtagaagataa
cacatcgtaggctgtagcctggagacctgaggcatggctgtggcagactg
gttaaaagctcagctcataaatggcagcagagaaaggacagggcaacaat
ggctgttgcctcctgtaggtccaagagggatagcatttgtgcatgtgtct
atagaagaaattctgcagcgctggttttgcagggtcagaactgagtgggc
acccacactggcacaagctcccacctcttcctgggattcgtcagttcctg
ttgcagatgttgtaagtcgtgttattcctaagggaagtttttgatagaaa
tggctttaactgggagtttgtgtgtgtgaaaatttggcttttagaaaagc
catcaaagggccggagagatgattcagccattaagaatactgactgcact
tcagaggacctgggttcaattcctagcacccacagagttgtgcacaactg
cctgtcactccattctaggggacatgataccctttttctggtctctgctg
gctttgcacgcatgtgcttaacaacacacatgctggcaaacattcaactc
cataagaaaccacttaaaagacgtcacagttgcttgactagggaggggtt
aagcaggactgtgaaccctgttctagatgccagggtttttagctctacgg
cctgcaggctgcctcctttccctcatgggaaccgcttgggaatcgagaga
acctctaggatactagactctgaaagctgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42945965_42947023
seq2: B6Ng01-162I11.b_42_1098 (reverse)

seq1  GTTCTTATGTCAGGGGACACTCT-GTTATCTGGAAGGTCAGGGATGGCTC  49
      | |||||| |||||||||| | | | ||  | ||||||||||||  ||||
seq2  GATCTTATATCAGGGGACAATTTAGGTAATTTGAAGGTCAGGGAATGCTC  50

seq1  C-GCAGGAAGTGACTCTCTGGGTCATCTGCAAACATACCACTAGGAAAGG  98
      | |||||| || ||||||||||||||||   ||| | ||||||||||| |
seq2  CAGCAGGATGT-ACTCTCTGGGTCATCTTGCAACCT-CCACTAGGAAAAG  98

seq1  CAAACAGGTACTTTTCAGGGCCTCCAATTACAGCAGGA-GATACTCCTAG  147
      ||| || |||| |||||||||||||||| ||||||||| |||||||||||
seq2  CAATCA-GTAC-TTTCAGGGCCTCCAATAACAGCAGGAGGATACTCCTAG  146

seq1  GAACGCTAATCCAGTTGACTTTTTACTGTGTTATCTCAGCATCAGATCTG  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAACGCTAATCCAGTTGACTTTTTACTGTGTTA-CTCAGCATCAGATCTG  195

seq1  AAGCACCCATTGATAGGATCAAGAGTAGTGTAGAAGTCAGCTTCTAAGTA  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCA-TGATAGGATCAAGAGTAGTGTAGAAGTCAGCTTCTAAGTA  244

seq1  CCACGGAGCAGAGTGGAGTGGAGTGGAAAGAGGGTTCTCACTGTTCTTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGCAGAGTGGAGTGGAGTGGAAAGAGGGTTCTCACTGTTCTTCA  294

seq1  AGC-TTGGACCACTCATATGCACACACATACAGACAAACACACATACATG  346
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTTTGGACCACTCATATGCACACACAT-CAGACAAACACACATACATG  343

seq1  AACACACACATGTACACATACACTCTGGCAAACACACATAAGCATATGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACATGTACACATACACTCTGGCAAACACACATAAGCATATGCA  393

seq1  CACATGCACATACACATGCATGCACATACACATATAGACACATATACACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACATACACATGCATGCACATACACATATAGACACATATACACC  443

seq1  TGCACACACACACAAACACACATGCATACATTTGCAAACACACACACAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACACAAACACACATGCATACATTTGCAAACACACACACAGA  493

seq1  AATACATACCCTAATGTTGTATAAGCTATGAAGAAAATTTATATTGCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACCCTAATGTTGTATAAGCTATGAAGAAAATTTATATTGCATT  543

seq1  ACCGAGGATGAGATAGTGGTGATTGCTACAGACAGCATGGGTCTGCTGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGATGAGATAGTGGTGATTGCTACAGACAGCATGGGTCTGCTGCC  593

seq1  CATTAACATATGAGCAGACTTGAAGGAAGAAATGAGCCAACCACAAATGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACATATGAGCAGACTTGAAGGAAGAAATGAGCCAACCACAAATGC  643

seq1  ACACAGAAGAACAGAGTTCTTGAAGGAGGGAAACCACAGTTGTGACAGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGAACAGAGTTCTTGAAGGAGGGAAACCACAGTTGTGACAGCC  693

seq1  TGAAGTGGCAACTTATTTGGTTTATTTGTGAAGTAGCCTTAGCAGGGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGCAACTTATTTGGTTTATTTGTGAAGTAGCCTTAGCAGGGTGC  743

seq1  TAGGGCATAAGAGTGATGGGCATCTGGGAGGAGGAGCCAGGGACTGCAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCATAAGAGTGATGGGCATCTGGGAGGAGGAGCCAGGGACTGCAAT  793

seq1  CCTGCAAAACGTCCAACCTTAGATTTAACCTATGTTGCATGGAGAAGTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAACGTCCAACCTTAGATTTAACCTATGTTGCATGGAGAAGTGA  843

seq1  TTGAGAGATTCTGAGTAGGCCAGTGACATGCTGACAAGGACAATGGGCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATTCTGAGTAGGCCAGTGACATGCTGACAAGGACAATGGGCAA  893

seq1  AGAAAGTGGAAGAAGAGAAATTGGAAGCCTTAAGAGAGTCCTGGGGGGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGAAGAAGAGAAATTGGAAGCCTTAAGAGAGTCCTGGGGGGGT  943

seq1  -GGGGGGGGGGAGCCGGGCGGTGGTGGTGGCTCACTGCTTTAATCCCAGC  995
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGAGCCGGGCGGTGGTGGTGGCTCACTGCTTTAATCCCAGC  993

seq1  ACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGTC  1043

seq1  TACAAAGTGAATTC  1059
      ||||||||||||||
seq2  TACAAAGTGAATTC  1057

seq1: chr18_42774820_42776046
seq2: B6Ng01-162I11.g_71_1303

seq1  GAATTCAGAAAAAATAACTCTATCAGGGTTGCATATGAACATGCGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAAATAACTCTATCAGGGTTGCATATGAACATGCGGCAGG  50

seq1  GCTGGGGCTCAACCCCATGGGATGGAAGGTATCAGAATCCATCAGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCTCAACCCCATGGGATGGAAGGTATCAGAATCCATCAGAGGAA  100

seq1  AGGGACTTCAACTCTGCTTGCATTTCTATCAGACATGGGAAGGATGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTCAACTCTGCTTGCATTTCTATCAGACATGGGAAGGATGATAA  150

seq1  CAGCCTGTTCTGCAGAAAAGACCCAAGACTAGGTTTCCTCTCCATGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTTCTGCAGAAAAGACCCAAGACTAGGTTTCCTCTCCATGTAGC  200

seq1  AGAACTGCCTTCGCTATCGACTTGAGATGATTAAAGTCCCCTTTGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCCTTCGCTATCGACTTGAGATGATTAAAGTCCCCTTTGTTTAA  250

seq1  TCCTTTTCACCCATCTGAACATACCAAAGTACCTGAAGCTCGGGAGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCACCCATCTGAACATACCAAAGTACCTGAAGCTCGGGAGTCAT  300

seq1  TTTGAATTAAATACCATTTTTTTTTGTTTGTTTGTTTCTTGAAATCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAAATACCATTTTTTTTTGTTTGTTTGTTTCTTGAAATCTATA  350

seq1  GCTCCAACTAAACCAAAACCAAAACCAAAACAAAACCCCAAACCAACCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACTAAACCAAAACCAAAACCAAAACAAAACCCCAAACCAACCGA  400

seq1  CTGGATAAAACTATTGTTAGTTGAAGTCCCAAGACAGAAAGCAGCCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAAAACTATTGTTAGTTGAAGTCCCAAGACAGAAAGCAGCCACCA  450

seq1  TGTGACAAAAAACCAGAGATGAATTCCACGCATTTATTAGTAGAAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAAAAACCAGAGATGAATTCCACGCATTTATTAGTAGAAGATAA  500

seq1  CACATCGTAGGCTGTAGCCTGGAGACCTGAGGCATGGCTGTGGCAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCGTAGGCTGTAGCCTGGAGACCTGAGGCATGGCTGTGGCAGACTG  550

seq1  GTTAAAAGCTCAGCTCATAAATGGCAGCAGAGAAAGGACAGGGCAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGCTCAGCTCATAAATGGCAGCAGAGAAAGGACAGGGCAACAAT  600

seq1  GGCTGTTGCCTCCTGTAGGTCCAAGAGGGATAGCATTTGTGCATGTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGCCTCCTGTAGGTCCAAGAGGGATAGCATTTGTGCATGTGTCT  650

seq1  ATAGAAGAAATTCTGCAGCGCTGGTTTTGCAGGGTCAGAACTGAGTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAAATTCTGCAGCGCTGGTTTTGCAGGGTCAGAACTGAGTGGGC  700

seq1  ACCCACACTGGCACAAGCTCCCACCTCTTCCTGGGATTCGTCAGTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACTGGCACAAGCTCCCACCTCTTCCTGGGATTCGTCAGTTCCTG  750

seq1  TTGCAGATGTTGTAAGTCGTGTTATTCCTAAGGGAAG-TTTTGATAGAAA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGCAGATGTTGTAAGTCGTGTTATTCCTAAGGGAAGTTTTTGATAGAAA  800

seq1  TGGCTTTAACT-GGAGTTTGTGTGTGTGAAAA-TTGGCTTTTAGAAAAGC  847
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  TGGCTTTAACTGGGAGTTTGTGTGTGTGAAAATTTGGCTTTTAGAAAAGC  850

seq1  CATCAAA-GGCCGGAGAGATGATTCAGCCATTAAGAATACTGACTGCACT  896
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCAAAGGGCCGGAGAGATGATTCAGCCATTAAGAATACTGACTGCAC-  899

seq1  TTCAGAGGACCTGGGTTCAATTCCTAGCACCCACAGAGTTGTGCACAACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGACCTGGGTTCAATTCCTAGCACCCACAGAGTTGTGCACAACT  949

seq1  GCCTGTCACTCCCATTCTAGGGGACATGATACCC-TTTTCTGGTCTCTGC  995
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GCCTGTCACT-CCATTCTAGGGGACATGATACCCTTTTTCTGGTCTCTGC  998

seq1  TGGCTTTGCACGCATGTGCTTCACCAACACACATGCTGGCAAAACATTCA  1045
      ||||||||||||||||||||| | |||||||||||||||| |||||||||
seq2  TGGCTTTGCACGCATGTGCTT-AACAACACACATGCTGGC-AAACATTCA  1046

seq1  ACTCCATAAGAAACCACTTAAAAGACGTCACCAGTTGCTGGACTAGGGAG  1095
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  ACTCCATAAGAAACCACTTAAAAGACGTCA-CAGTTGCTTGACTAGGGAG  1095

seq1  GGG-TAAGCAGGAC-GTGAA-CCTGTTCTAGATGCGAGGG-TTTTAGC-C  1140
      ||| |||||||||| ||||| |||||||||||||| |||| ||||||| |
seq2  GGGTTAAGCAGGACTGTGAACCCTGTTCTAGATGCCAGGGTTTTTAGCTC  1145

seq1  TACGGCCTGGCAGGCTGCTTCCCTTCCCTCACTGGACCCGC-TGGGGATC  1189
      |||||||| ||||||||| ||| ||||||||  ||| |||| |||| |||
seq2  TACGGCCT-GCAGGCTGCCTCCTTTCCCTCATGGGAACCGCTTGGGAATC  1194

seq1  CAGAAGGACTCTCAGGAT-CAAAGCT-TGAAAGCTGGGTA  1227
       |||    |||| ||||| | |  || |||||||||||||
seq2  GAGAGAACCTCT-AGGATACTAGACTCTGAAAGCTGGGTA  1233