BAC Information

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BAC

Clone NameB6Ng01-162P07
Chromosome18 (Build37)
Map Location 3,804,871 - 3,971,958
singlet/doubletdoublet
Overlap geneLOC435549
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P07.bB6Ng01-162P07.g
ACCDH955662DH955663
length1,1801,152
definitionDH955662|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P07, 5' end.DH955663|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,804,871 - 3,806,032)(3,970,800 - 3,971,958)
sequence
gaattctgttatttcttctttgaaatattttctacgtcatctctaatatt
ctctgctttcaacatcttcaacagtttgctattgtattttttcctgtggt
cctggcaccagaacatcctgcttgcttcttaggttttatatggtagttcc
ttctcagaccaatgtcacctttcagccatgtctttggagaggtcttctcc
taacctctctgtccaaagtaacctttcttcaacctcagtctttttttcca
ttattctgtttttcagaaaatttagcataacttcaaggaagtagctaatg
tgtcaaacttgtctatccaatttacagtgatgtccctaacatctgacaca
ggagatgtctaataaataagtgccaaggtgattaagcaatgagtgcctat
atggacatgaggaagactatgtttaggctgtgccaaaacaaaaagcatca
gtggctgctgagcaggtgtatttacagaccaagaagatgtaactgtgtac
atgcaggtacatgcacatgtacacagtatacacatgtctacacacacaca
cacacacacacacacacacacactgtttgggtcaagttttcttctgaaag
aagaagtgccttctttggaaggccctcactggtaccacctttgtctttga
ggatcagctgcctcattcacaggcagtgtggatccttattctctaactct
tcttatggactctgctcctcagcacagattacacagtctctccaccaatc
ttttcagcatctaagcatgactatcccatcccccacccccactcatgggc
attcattgatttatctcaagttttttcccaccagattgagttcataggca
tggtgtctcagctccagtcattatctcagggacatagtctccaagctcca
tcaatttccggtctaccggactttagattttgtagctgtccctagaagat
atctgttctgggggatgtggaccaatgtttccttggacaatgattctagt
gacttctattctgatcatcccaaataccaatgggacttcagtctttgtac
tatttcactcctggattacctcctgaaagaagaattcctcagactctgtt
tcttttcattccccgggagcatgtcttttatgtaagaaaccctagaatgc
attgggagtgggacctcaaggggaacacat

gaattcccccatacaagcttagagtttcctagaacatgggaacaacatga
ccagtcagcgatgtttgcatttgcagagtagaatttttgtgacaaccttt
ggctctaaccctgtactgtgagccagagtataattgtctgatgtgactgt
aagagctggtgcttcagagggactgtcaggactgataattcctggtatat
tggcaggttagaagagtgtgcaggttcaagtagagaacatcgaccgcaga
acctcctgtctcattgactcatgactctacccaagtaggtaagctgctcc
ctacctgaaggtctcttaactacctaacaatttccagaaggcagacctac
aaaagaatgcatgcctggttctgcagacactacagatgccctgctgcctt
tcatgagcatttaacagcataatatttcacacgtcaaatacctaaggcaa
ctgagatatctcaagataacaacagggtattgggccgcaaaaggtgacag
tggccttcttctgacggaaccaagctttgctagtgtaaaactaagattca
tggcttttcagcagacactgcacactgtctgagaacagctttaaggacca
cagttcctcaaccttgatggaatcctctgtctttttcattcctttcctca
gggcttggcaactcttgattgatgagtctggactcagtctcatcagggaa
aattccagagcaaaagcgtctttaagagatattcaagacgactgcaggta
ttaccagtagacatgcatacaaaacccacagtggctgcctgtcaagccca
cgtcataacctcttattttagccttgttcctcctattgctttgaaggatg
agctcaaagagttgtgagtctctgtgactgaaacagtgggcagccttcca
ggagggagtgggtctccgtggggattctgaacacagttctatattgggtg
gtcagctttatactcttcaaacatcaaatggcagtgttctccattccgga
gacatctgaacctatcacagcattgtaggcaccgaagggaaccacatgaa
cgaagcttctcttgaccaggctaggttggccaacctgctagttgtttttc
atgctgtttcctttagacttttcggattcaagctcgtgccggattgattt
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3804871_3806032
seq2: B6Ng01-162P07.b_43_1222

seq1  GAATTCTGTTATTTCTTCTTTCAGAATAGTTTCTACTTCATCTCTAATAT  50
      ||||||||||||||||||||| | |||| ||||||| |||||||||||||
seq2  GAATTCTGTTATTTCTTCTTTGA-AATATTTTCTACGTCATCTCTAATAT  49

seq1  TCTCTGCTTTCAACATCTTCAACAGTTTGCTATTGTATTTTTTCCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTCAACATCTTCAACAGTTTGCTATTGTATTTTTTCCTGTGG  99

seq1  TCCTGGCACCAGAACATCCTGCTTGCTTCTTAGGTTTTATATGGTAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCACCAGAACATCCTGCTTGCTTCTTAGGTTTTATATGGTAGTTC  149

seq1  CTTCTCAGTCCAATGTCACCTTTCAGCCATGTCTTTGGAGAGGTCTTCTC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGACCAATGTCACCTTTCAGCCATGTCTTTGGAGAGGTCTTCTC  199

seq1  CTAACCTCTCTGTCCAAAGTAACCTTTCTTCAACCTCAGTCTTTTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCTCTGTCCAAAGTAACCTTTCTTCAACCTCAGTCTTTTTTTCC  249

seq1  ATTATTCTGTTTTTCAGAAAATTTAGCATAACTTCAAGGAAGTAGCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGTTTTTCAGAAAATTTAGCATAACTTCAAGGAAGTAGCTAAT  299

seq1  GTGTCAAACTTGTCTATCCAATTTACAGTGATGTCCCTAACATCTGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAACTTGTCTATCCAATTTACAGTGATGTCCCTAACATCTGACAC  349

seq1  AGGAGATGTCTAATAAATAAGTGCCAAGGTGATTAAGCAATGAGTGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGTCTAATAAATAAGTGCCAAGGTGATTAAGCAATGAGTGCCTA  399

seq1  TATGGACATGAGGAAGACTATGTTTAGGCTGTGCCAAAACAAAAAGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATGAGGAAGACTATGTTTAGGCTGTGCCAAAACAAAAAGCATC  449

seq1  AGTGGCTGCTGAGCAGGTGTATTTACAGACCAAGAAGATGTAACTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCTGAGCAGGTGTATTTACAGACCAAGAAGATGTAACTGTGTA  499

seq1  CATGCAGGTACATGCACATGTACACAGTATACACATGTCTACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGTACATGCACATGTACACAGTATACACATGTCTACACACACAC  549

seq1  ACACACACACACACACACACACACTGTTTGGGTCAAGTTTTCTTCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACTGTTTGGGTCAAGTTTTCTTCTGAAA  599

seq1  GAAGAAGTGCCTTCTTTGGAAGGCCCTCACTGGTACCACCTTTGTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTGCCTTCTTTGGAAGGCCCTCACTGGTACCACCTTTGTCTTTG  649

seq1  AGGTTCAGCTGCCTCATTCACAGGCAGTGTGGATCCTTATTCTCTAACTC  700
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGCTGCCTCATTCACAGGCAGTGTGGATCCTTATTCTCTAACTC  699

seq1  TTCTTATGGACTCTGCTCCTCAGCACAGATTACACAGTCTCTCCACCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGGACTCTGCTCCTCAGCACAGATTACACAGTCTCTCCACCAAT  749

seq1  C-TTTCAGCATCTAAGCATGACTATCCCATCCCCCACCCCCACTCATGGC  799
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTTCAGCATCTAAGCATGACTATCCCATCCCCCACCCCCACTCATGGG  799

seq1  CATTCATTGATTTATCTC-AGGTTTTTCCCACCAGATTGAGTTCATAGTC  848
      |||||||||||||||||| || |||||||||||||||||||||||||| |
seq2  CATTCATTGATTTATCTCAAGTTTTTTCCCACCAGATTGAGTTCATAGGC  849

seq1  ATGGTGTCTCACCTCCAGTCATT-TCTC-TGGACATAAGTCTCCAACCTC  896
      ||||||||||| ||||||||||| ||||  |||||| ||||||||| |||
seq2  ATGGTGTCTCAGCTCCAGTCATTATCTCAGGGACAT-AGTCTCCAAGCTC  898

seq1  C-TCAA-TTCCGGTCTACCCGACTTATGACTTTGTAGCTGTCCCT-GAAG  943
      | |||| |||||||||||| |||||  || ||||||||||||||| ||||
seq2  CATCAATTTCCGGTCTACCGGACTTTAGATTTTGTAGCTGTCCCTAGAAG  948

seq1  ATACCT-TTCTGGGGGGATGTGGAACAAGGGTTCCTTGGACTATGATTCT  992
      ||| || |||| |||||||||||| ||| | |||||||||| ||||||||
seq2  ATATCTGTTCT-GGGGGATGTGGACCAATGTTTCCTTGGACAATGATTCT  997

seq1  AGTGAC-TCTA-TCTTATC-TCCCAAATACAAATGGGACTTCAATC-TTG  1038
      |||||| |||| ||| ||| |||||||||| |||||||||||| || |||
seq2  AGTGACTTCTATTCTGATCATCCCAAATACCAATGGGACTTCAGTCTTTG  1047

seq1  TACCATTTCCACT-CTGGAGATACTCCTGAGTGTAAAAATCCTCAGTCTC  1087
      ||| |||| |||| |||||    |||||||  | | || ||||||| |||
seq2  TACTATTT-CACTCCTGGATTACCTCCTGAAAGAAGAATTCCTCAGACTC  1096

seq1  TGTTTC-TTTCACTCCCCGGGAGC---TGCTTTATAAAAGAACCCCTA-A  1132
      |||||| ||||| |||||||||||   |  |||||  ||||| ||||| |
seq2  TGTTTCTTTTCATTCCCCGGGAGCATGTCTTTTATGTAAGAAACCCTAGA  1146

seq1  GAGCATT--GAGTGGGA-CTC-AGGTGAACACAT  1162
        |||||  |||||||| ||| ||| ||||||||
seq2  ATGCATTGGGAGTGGGACCTCAAGGGGAACACAT  1180


seq1: chr18_3970800_3971958
seq2: B6Ng01-162P07.g_66_1217 (reverse)

seq1  CCAAAACCAATCCAGCAACGAGCTTTGATACCGAAAAGTATTAAAAGAAA  50
       | ||| |||||| || |||||| ||||  ||||||||| |  |||| ||
seq2  -CCAAATCAATCCGGC-ACGAGC-TTGAATCCGAAAAGTCT--AAAGGAA  45

seq1  ACAGCATGAAAAAACAAACAAGCAGGTTGGCCCAACCTAGCCTGGGTTCA  100
      |||||||||||||   ||| |||||||||| ||||||||||||||  |||
seq2  ACAGCATGAAAAA--CAACTAGCAGGTTGG-CCAACCTAGCCTGG--TCA  90

seq1  AGAG-AGCTTCGTTTCATGTGGTTCCCTTC-GTGCCTAC-ATGCTGTGAT  147
      |||| ||||||| ||||||||||||||||| |||||||| ||||||||||
seq2  AGAGAAGCTTCG-TTCATGTGGTTCCCTTCGGTGCCTACAATGCTGTGAT  139

seq1  AGGTTCAGGATGTCTCCGG-ATGGAGAACACTGCCATTTGATGTTTGAAG  196
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGTTCA-GATGTCTCCGGAATGGAGAACACTGCCATTTGATGTTTGAAG  188

seq1  AGTATAAAGCTGACCACCCAATATAGAACTGTGTTCAGAATCCCCACGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAGCTGACCACCCAATATAGAACTGTGTTCAGAATCCCCACGGA  238

seq1  GACCCACTCCCTCCTGGAAGGCTGCCCACTGTTTCAGTCACAGAGACTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTCCCTCCTGGAAGGCTGCCCACTGTTTCAGTCACAGAGACTCA  288

seq1  CAACTCTTTGAGCTCATCCTTCAAAGCAATAGGAGGAACAAGGCTAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTTGAGCTCATCCTTCAAAGCAATAGGAGGAACAAGGCTAAAAT  338

seq1  AAGAGGTTATGACGTGGGCCTGACAGGCAGCCACTGTGGG-TTTGTATGC  395
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  AAGAGGTTATGACGTGGGCTTGACAGGCAGCCACTGTGGGTTTTGTATGC  388

seq1  ATGTCTACTGGTAATACCTGCAGTCGTCTTGAATATCTCTTAAAGACGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACTGGTAATACCTGCAGTCGTCTTGAATATCTCTTAAAGACGCT  438

seq1  TTTGCTCTGGAATTTTCCCTGATGAGACTGAGTCCAGACTCATCAATCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTGGAATTTTCCCTGATGAGACTGAGTCCAGACTCATCAATCAA  488

seq1  GAGTTGCCAAGCCCTGAGGAAAGGAATGAAAAAGACAGAGGATTCCATCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCAAGCCCTGAGGAAAGGAATGAAAAAGACAGAGGATTCCATCA  538

seq1  AGGTTGAGGAACTGTGGTCCTTAAAGCTGTTCTCAGACAGTGTGCAGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGGAACTGTGGTCCTTAAAGCTGTTCTCAGACAGTGTGCAGTGT  588

seq1  CTGCTGAAAAGCCATGAATCTTAGTTTTACACTAGCAAAGCTTGGTTCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAAAGCCATGAATCTTAGTTTTACACTAGCAAAGCTTGGTTCCG  638

seq1  TCAGAAGAAGGCCACTGTCACCTTTTGCGGCCCAATACCCTGTTGTTATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAAGGCCACTGTCACCTTTTGCGGCCCAATACCCTGTTGTTATC  688

seq1  TTGAGATATCTCAGTTGCCTTAGGTATTTGACGTGTGAAATATTATGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATATCTCAGTTGCCTTAGGTATTTGACGTGTGAAATATTATGCTG  738

seq1  TTAAATGCTCATGAAAGGCAGCAGGGCATCTGTAGTGTCTGCAGAACCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTCATGAAAGGCAGCAGGGCATCTGTAGTGTCTGCAGAACCAG  788

seq1  GCATGCATTCTTTTGTAGGTCTGCCTTCTGGAAATTGTTAGGTAGTTAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTCTTTTGTAGGTCTGCCTTCTGGAAATTGTTAGGTAGTTAAG  838

seq1  AGACCTTCAGGTAGGGAGCAGCTTACCTACTTGGGTAGAGTCATGAGTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCAGGTAGGGAGCAGCTTACCTACTTGGGTAGAGTCATGAGTCA  888

seq1  ATGAGACAGGAGGTTCTGCGGTCGATGTTCTCTACTTGAACCTGCACACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGGAGGTTCTGCGGTCGATGTTCTCTACTTGAACCTGCACACT  938

seq1  CTTCTAACCTGCCAATATACCAGGAATTATCAGTCCTGACAGTCCCTCTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACCTGCCAATATACCAGGAATTATCAGTCCTGACAGTCCCTCTG  988

seq1  AAGCACCAGCTCTTACAGTCACATCAGACAATTATACTCTGGCTCACAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAGCTCTTACAGTCACATCAGACAATTATACTCTGGCTCACAGT  1038

seq1  ACAGGGTTAGAGCCAAAGGTTGTCACAAAAATTCTACTCTGCAAATGCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTAGAGCCAAAGGTTGTCACAAAAATTCTACTCTGCAAATGCAA  1088

seq1  ACATCGCTGACTGGTCATGTTGTTCCCATGTTCTAGGAAACTCTAAGCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGCTGACTGGTCATGTTGTTCCCATGTTCTAGGAAACTCTAAGCTT  1138

seq1  GTATGGGGGAATTC  1159
      ||||||||||||||
seq2  GTATGGGGGAATTC  1152


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