BAC Information

Click to search

BAC

Clone NameB6Ng01-163I06
Chromosome18 (Build37)
Map Location 68,049,700 - 68,183,231
singlet/doubletdoublet
Overlap geneLOC667939, D18Ertd653e
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
Downstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163I06.bB6Ng01-163I06.g
ACCDH956082DH956083
length4281,065
definitionDH956082|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I06, 5' end.DH956083|Mus musculus domesticus DNA, BAC clone: B6Ng01-163I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,049,700 - 68,050,133)(68,182,161 - 68,183,231)
sequence
acatctgggacctgcaaagtcagccaaagaaaccctattactgggcagtg
cgaatccctacaggagaacggagttttggttacctaaattgatacagcat
caactgccttgtaaacatatttctattcataaacaaaggccttaaccaga
ggagcttctctgtgcagtcaagcgcttcaccttggttaatgtttctaacc
cagctggcaacaatgtaatcttgccaccaccaaagtgttttcctctactg
ggacattataaaactcttctatgaaattaagctctacagttctctctctc
tctctctctctctctctctctctctctctctctccctccctccccccttc
tcctcctcctcctcctcctcttcttcttcttcttcttcttcttcctcttc
ctcctcctcctccgcttcctcctcctcc
gaattccatatcaacccttaacatgacatagaacttgcactgtacaagat
tgggtccaaattcttccacagaattttgcctttaaaaattccagagataa
tttcccttggtgacaaactacatggtccaacagcacctcatgtcacagtt
tttgtataactgcttggattctctgcaatcaatctgattccctcttgaca
ttgtgtcttgacaccagggctgcctgtataaaagatggtttattctagaa
ctaaatatgagagtccatggcccaggaactcaggtcacccccaaatacca
tgttccaatgtgatagcagcttcaatacttattcatgctatttttaattt
tatacaatatatttcaatcatattctttccccccacaccaactccttcca
gattctctccacttagtaataaaggagcgggaagtgatgaattcaggcac
tttttaaatgcattggcagaaacattaggcacacaagcaacagcaaagta
gagaggtctgtgctggaagtctcgtgctagctgacaacattctgagcctt
tcttttggccacaaattttgggagagtcccttcatggtcgccagataata
ctgagaaaattgggatcccctgttggaattctaactctcactaataaaat
ttaagaatggccacaaatataagtcgaagggaaactcttattcaagtaaa
aaaaaataaaatccgaaaactgctagggcaggcaaccagtaaatctccgc
agctgcccggaagagtccaatggagaagagaaaaagcagcagcagccaca
cttttctgagttaagctagcacgatgtccagcgacatggtggacaagcaa
atggcaagcacaatgaggaagcgcatagctagagccttataagctactac
actaggggacaggaattctaggaggaaaagtcccatatctcattaaaggg
tcattgtactcttaccatttagcatggcttaggcatgctcaccttcctgg
ggtgatccgtctgcctgggggtagtacttggactagtactgatccaccca
atctggaatgaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68049700_68050133
seq2: B6Ng01-163I06.b_45_478

seq1  GAATTCACATCTGGGACCTGCAAAGTCAGCCAAAGAAACCCTATTACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTGGGACCTGCAAAGTCAGCCAAAGAAACCCTATTACTGG  50

seq1  GCAGTGCGAATCCCTACAGGAGAACGGAGTTTTGGTTACCTAAATTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCGAATCCCTACAGGAGAACGGAGTTTTGGTTACCTAAATTGATA  100

seq1  CAGCATCAACTGCCTTGTAAACATATTTCTATTCATAAACAAAGGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAACTGCCTTGTAAACATATTTCTATTCATAAACAAAGGCCTTA  150

seq1  ACCAGAGGAGCTTCTCTGTGCAGTCAAGCGCTTCACCTTGGTTAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGAGCTTCTCTGTGCAGTCAAGCGCTTCACCTTGGTTAATGTTT  200

seq1  CTAACCCAGCTGGCAACAATGTAATCTTGCCACCACCAAAGTGTTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCAGCTGGCAACAATGTAATCTTGCCACCACCAAAGTGTTTTCCT  250

seq1  CTACTGGGACATTATAAAACTCTTCTATGAAATTAAGCTCTACAGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGGACATTATAAAACTCTTCTATGAAATTAAGCTCTACAGTTCTC  300

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCC  350

seq1  CCCTTCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTC  400

seq1  CTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCC  434
      ||||||||||||||||||| ||||||||||||||
seq2  CTCTTCCTCCTCCTCCTCCGCTTCCTCCTCCTCC  434

seq1: chr18_68182161_68183231
seq2: B6Ng01-163I06.g_69_1132 (reverse)

seq1  GCCTCATTCCAG-TTGGGTGGATCAGTCACTTGTCCAAGGTACTAACCCC  49
      |||||||||||| |||||||||||||| ||| |||||| ||||| |||||
seq2  GCCTCATTCCAGATTGGGTGGATCAGT-ACTAGTCCAA-GTACT-ACCCC  47

seq1  CAGGCAGGACGGATCACCCCAGGAAGGTGAGCATGCCTTAAGCCATGCTA  99
      |||||| |||||||||||||||||||||||||||||| ||||||||||| 
seq2  CAGGCA-GACGGATCACCCCAGGAAGGTGAGCATGCC-TAAGCCATGCT-  94

seq1  AAATGGTAAGAGGTACAATGACCCCTTTAATGAGATATGGGACTTTTCCT  149
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AAATGGTAAGA-GTACAATGA-CCCTTTAATGAGATATGGGACTTTTCCT  142

seq1  CCTAGAATTCCTGTCCCCTAGTGTAGTAGCTTATAAGGCTCTAGCTATGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTCCTGTCCCCTAGTGTAGTAGCTTATAAGGCTCTAGCTATGC  192

seq1  GCTTCCTCATTGTGCTTGCCATTTGCTTGTCCACCATGTCGCTGGACATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCATTGTGCTTGCCATTTGCTTGTCCACCATGTCGCTGGACATC  242

seq1  GTGCTAGCTTAACTCAGAAAAGTGTGGCTGCTGCTGCTTTTTCTCTTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCTTAACTCAGAAAAGTGTGGCTGCTGCTGCTTTTTCTCTTCTC  292

seq1  CATTGGACTCTTCCGGGCAGCTGCGGAGATTTACTGGTTGCCTGCCCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACTCTTCCGGGCAGCTGCGGAGATTTACTGGTTGCCTGCCCTAG  342

seq1  CAGTTTTCGGATTTTATTTTTTTTTACTTGAATAAGAGTTTCCCTTCGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCGGATTTTATTTTTTTTTACTTGAATAAGAGTTTCCCTTCGAC  392

seq1  TTATATTTGTGGCCATTCTTAAATTTTATTAGTGAGAGTTAGAATTCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGTGGCCATTCTTAAATTTTATTAGTGAGAGTTAGAATTCCAA  442

seq1  CAGGGGATCCCAATTTTCTCAGTATTATCTGGCGACCATGAAGGGACTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATCCCAATTTTCTCAGTATTATCTGGCGACCATGAAGGGACTCT  492

seq1  CCCAAAATTTGTGGCCAAAAGAAAGGCTCAGAATGTTGTCAGCTAGCACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATTTGTGGCCAAAAGAAAGGCTCAGAATGTTGTCAGCTAGCACG  542

seq1  AGACTTCCAGCACAGACCTCTCTACTTTGCTGTTGCTTGTGTGCCTAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCAGCACAGACCTCTCTACTTTGCTGTTGCTTGTGTGCCTAATG  592

seq1  TTTCTGCCAATGCATTTAAAAAGTGCCTGAATTCATCACTTCCCGCTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCAATGCATTTAAAAAGTGCCTGAATTCATCACTTCCCGCTCCT  642

seq1  TTATTACTAAGTGGAGAGAATCTGGAAGGAGTTGGTGTGGGGGGAAAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTAAGTGGAGAGAATCTGGAAGGAGTTGGTGTGGGGGGAAAGAA  692

seq1  TATGATTGAAATATATTGTATAAAATTAAAAATAGCATGAATAAGTATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGAAATATATTGTATAAAATTAAAAATAGCATGAATAAGTATTG  742

seq1  AAGCTGCTATCACATTGGAACATGGTATTTGGGGGTGACCTGAGTTCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTATCACATTGGAACATGGTATTTGGGGGTGACCTGAGTTCCTG  792

seq1  GGCCATGGACTCTCATATTTAGTTCTAGAATAAACCATCTTTTATACAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGACTCTCATATTTAGTTCTAGAATAAACCATCTTTTATACAGG  842

seq1  CAGCCCTGGTGTCAAGACACAATGTCAAGAGGGAATCAGATTGATTGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGGTGTCAAGACACAATGTCAAGAGGGAATCAGATTGATTGCAG  892

seq1  AGAATCCAAGCAGTTATACAAAAACTGTGACATGAGGTGCTGTTGGACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAAGCAGTTATACAAAAACTGTGACATGAGGTGCTGTTGGACCA  942

seq1  TGTAGTTTGTCACCAAGGGAAATTATCTCTGGAATTTTTAAAGGCAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTGTCACCAAGGGAAATTATCTCTGGAATTTTTAAAGGCAAAAT  992

seq1  TCTGTGGAAGAATTTGGACCCAATCTTGTACAGTGCAAGTTCTATGTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAAGAATTTGGACCCAATCTTGTACAGTGCAAGTTCTATGTCAT  1042

seq1  GTTAAGGGTTGATATGGAATTC  1071
      ||||||||||||||||||||||
seq2  GTTAAGGGTTGATATGGAATTC  1064