BAC Information

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BAC

Clone NameB6Ng01-168C17
Chromosome11 (Build37)18 (Build37)
Map Location 72,914,209 - 72,915,44455,698,516 - 55,699,006
singlet/doubletsingletsinglet
Overlap geneItgae
Upstream genePitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik
Downstream geneGsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C17.bB6Ng01-168C17.g
ACCDH959479DH959480
length1,201657
definitionDH959479|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C17, 5' end.DH959480|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,914,209 - 72,915,444)(55,698,516 - 55,699,006)
sequence
gaattctgtctatatgagcctgttgttcattgttcaaatattttggagat
tttatcagtgaggccttgtgcctagtgttctttctgaggttcttggtaat
gaattaaaaaaaacaaaaacaaaaacaaaaaaaaaaccctctgattcatc
ttgtatatttcttttttggccagttttgaggggttgtttttggttttttg
ttttgtttttgaaggaatttctctatctcatcgaaattatcaaggttact
ggcataacatttggtatagtatcctctcgtttagactgcatctaaggcca
gacatggtggcgcacgcctttagtcccagagacagaaggatctctgaact
ggatgccagcctggtctacagagtaagttccatgataggtaggactatac
agagaagcactctcaaaacaaaacaaaacaagcaaaaacaaaaacaaaaa
caaaaaaacaatccaaacaaataaaataagcctacaaaaatctccaaaac
taaaatatcaagtaaaaaatggccaacactcaaacatgcaattagcataa
agaccatatcatctaatgttaaaaacattattcagttttagttacatatc
aatgaactaatatttccacttaccaacaagatattaacattttacactgt
tttatcactataaaatgtataatataaactatgctatcttagccacccca
cccaacacgtcctctaagaactgcagttcaattggagcctaaattggtaa
caacccagagtcacagaggaaatcacagaggaaacgctgagtgcttagat
taagatatgagaaatcagaacctgcagactcacttaaagcagtgattcca
ggaaacgcagtcacatctcacacacactcaaagaggctgagcatggtggc
acaggcctggaaactaggcctggaagatggaaacgggagaaccaggagtt
cagttcatcttcagctacattaggagttcaagatcagcctatgctgcaga
aaccccaccctaaacgacaaaaacaacacaaaacaaacaaacaaaaaacc
cactatatgcacacaatctattctcccattttctcatgtcttctctttaa
tttcacttatatatactactctcttacattcaaatgcaatctctccatcg
ttccgtcctgcctgacaaatcctaccacaatttcttctcctcccttttct
c
gaattcactgactataaactgaccctttcaggaaacaaataggaatggaa
tctgaggccattctgatcctacttacatcatcttccaacagagtccactg
tctttaattcattgcatttgttttaaaggtatgtttgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtttcttctcttcttgctggaagggttcaaaccctt
tctttagaagtgattctaggagcaagttaatgctgcaaaattacatataa
gaatgatgcatatttaccttcttctggtctctgcatgtatcactgacatt
gaaagttcaagatcctgtttgtattacaacaaatggatgtcactttttaa
tatgcttttaagatttttatacaatggtgcactttaaaaactcagcaatt
gctgtcacttgtgcaatgtcaggacaagcttttggcattgttaaagctca
ccaaaaaggctgaattaaccatcttgactattgagaaatttagagaaaga
gaaaaatctttccatgtggtgacagttcaaaggaacacagagacagatgg
atagagtgttatcactagtcagacattctcaccattcaggaagctcaaag
aaaaagagagaccaggagccagctaccaacagcaagctctctctctctct
ctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72914209_72915444
seq2: B6Ng01-168C17.b_47_1247

seq1  GAATTCTGTCTATATGAGCCTGTTGTTCATTGTTCAAATATTTTGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTATATGAGCCTGTTGTTCATTGTTCAAATATTTTGGAGAT  50

seq1  TTTATCAGTGAGGCCTTGTGCCTAGTGTTCTTTCTGAGGTTCTTGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGTGAGGCCTTGTGCCTAGTGTTCTTTCTGAGGTTCTTGGTAAT  100

seq1  GAATTAAAAAAAACAAAAACAAAAACAAAAAAAAAACCCTCTGATTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAAAAAACAAAAACAAAAACAAAAAAAAAACCCTCTGATTCATC  150

seq1  TTGTATATTTCTTTTTTGGCCAGTTTTGAGGGGTTGTTTTTGGTTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTTCTTTTTTGGCCAGTTTTGAGGGGTTGTTTTTGGTTTTTTG  200

seq1  TTTTGTTTTTGAAGGAATTTCTCTATCTCATCGAAATTATCAAGGTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGAAGGAATTTCTCTATCTCATCGAAATTATCAAGGTTACT  250

seq1  GGCATAACATTTGGTATAGTATCCTCTCGTTTAGACTGCATCTAAGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAACATTTGGTATAGTATCCTCTCGTTTAGACTGCATCTAAGGCCA  300

seq1  GACATGGTGGCGCACGCCTTTAGTCCCAGAGACAGAAGGATCTCTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTGGCGCACGCCTTTAGTCCCAGAGACAGAAGGATCTCTGAACT  350

seq1  GGATGCCAGCCTGGTCTACAGAGTAAGTTCCATGATAGGTAGGACTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAGCCTGGTCTACAGAGTAAGTTCCATGATAGGTAGGACTATAC  400

seq1  AGAGAAGCACTCTCAAAACAAAACAAAACAAGCAAAAACAAAAACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCACTCTCAAAACAAAACAAAACAAGCAAAAACAAAAACAAAAA  450

seq1  CAAAAAAACAATCCAAACAAATAAAATAAGCCTACAAAAATCTCCAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAATCCAAACAAATAAAATAAGCCTACAAAAATCTCCAAAAC  500

seq1  TAAAATATCAAGTAAAAAATGGCCAACACTCAAACATGCAATTAGCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCAAGTAAAAAATGGCCAACACTCAAACATGCAATTAGCATAA  550

seq1  AGACCATATCATCTAATGTTAAAAACATTATTCAGTTTTAGTTACATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATATCATCTAATGTTAAAAACATTATTCAGTTTTAGTTACATATC  600

seq1  AATGAACTAATATTTCCACTTACCAACAAGATATTAACATTTTACACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTAATATTTCCACTTACCAACAAGATATTAACATTTTACACTGT  650

seq1  TTTATCACTATAAAATGTATAATATAAACTATGCTATCTTAGCCACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACTATAAAATGTATAATATAAACTATGCTATCTTAGCCACCCCA  700

seq1  CCCAACACGTCCTCTAAGAACTGCAGTTCAATTGGAGCCTAAATTGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACGTCCTCTAAGAACTGCAGTTCAATTGGAGCCTAAATTGGTAA  750

seq1  CAACCCAGAGTCACAGAGGAAATCACAGAGGAAACGCTGAGTGCTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGAGTCACAGAGGAAATCACAGAGGAAACGCTGAGTGCTTAGAT  800

seq1  TAAGATATGAGAAATCAGAACCTGCAGACTCACTTAAAGCAGTGATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATGAGAAATCAGAACCTGCAGACTCACTTAAAGCAGTGATTCCA  850

seq1  GGAAACGCAGTCACATCTCACACACACTCAAAGAGGCTGAGCATGGTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGCAGTCACATCTCACACACACTCAAAGAGGCTGAGCATGGTGGC  900

seq1  ACAGGCCTGGAAACTAGGCCTGGAAGATGGAAACGGGAGAACCAGGAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGGAAACTAGGCCTGGAAGATGGAAACGGGAGAACCAGGAGTT  950

seq1  CAGTTCATCTTCAGCTACATTAGGAGTTCAAGATCAGCCTATGCTGCAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGTTCATCTTCAGCTACATTAGGAGTTCAAGATCAGCCTATGCTGCA-G  999

seq1  AAACCCCACCCTAAAACAAACAAAAAACAAACACCAAAAACAAAAACAAA  1050
      |||||||||||||||    |||||||   |||||  |||||  |||||||
seq2  AAACCCCACCCTAAA--CGACAAAAA--CAACAC--AAAAC--AAACAAA  1041

seq1  ACAAAAAAACCCACATATATGCACACAATTCTATTCTCCCCATTTTTCTC  1100
         ||||||||||| ||||||||||||| |||||||||||   |||||||
seq2  --CAAAAAACCCAC-TATATGCACACAA-TCTATTCTCCC--ATTTTCTC  1085

seq1  AATGTTCCTTCTTCTTTTATTTTCTACTTAATTAATTAATTAATTTACTC  1150
       ||||  |||| ||||| ||||   |||||      ||  ||   |||||
seq2  -ATGT--CTTC-TCTTTAATTT--CACTTA------TA--TATACTACTC  1121

seq1  TCTTTACAATTCAATTGCAATACTTCCTCCTCTCCTTCCTGTCCTGCTCT  1200
      || |||| |||||| |||||| ||  ||||  || |||| ||||||| ||
seq2  TC-TTAC-ATTCAAATGCAAT-CT--CTCC-ATCGTTCC-GTCCTGC-CT  1163

seq1  TACAAATTCCTACCACAATTTC--CTCCTCCC-CTTCTC  1236
       ||||| |||||||||||||||  ||||||||  |||||
seq2  GACAAA-TCCTACCACAATTTCTTCTCCTCCCTTTTCTC  1201

seq1: chr18_55698516_55699006
seq2: B6Ng01-168C17.g_232_723

seq1  TTTCTTCTCTTCTTGCTGGAAGGGTTCAAACCCTTTCTTTAGAAGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTTCTTGCTGGAAGGGTTCAAACCCTTTCTTTAGAAGTGATT  50

seq1  CTAGGAGCAAGTTAATGCTGCAAAATTACATATAAGAATGATGCATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCAAGTTAATGCTGCAAAATTACATATAAGAATGATGCATATTT  100

seq1  ACCTTCTTCTGGTCTCTGCATGTATCACTGACATTGAAAGTTCAAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTCTGGTCTCTGCATGTATCACTGACATTGAAAGTTCAAGATCC  150

seq1  TGTTTGTATTACAACAAATGGATGTCACTTTTTAATATGCTTTTAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATTACAACAAATGGATGTCACTTTTTAATATGCTTTTAAGATT  200

seq1  TTTATACAATGGTGCACTTTAAAAACACAGCAATTGCTGTCACTTGTGCA  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTATACAATGGTGCACTTTAAAAACTCAGCAATTGCTGTCACTTGTGCA  250

seq1  ATGTCAGGACAAGCTTTTGGCATTGTTAAAGCTCACCAAAAAGGCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGACAAGCTTTTGGCATTGTTAAAGCTCACCAAAAAGGCTGAAT  300

seq1  TAACCATCTTGACTATTGAGAAATTTAGAGAAAGAGAAAAATCTTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCTTGACTATTGAGAAATTTAGAGAAAGAGAAAAATCTTTCCAT  350

seq1  GTGGTGACAGTTCAAAGGAACACAGAGACAGATGGATAGAGTGTTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACAGTTCAAAGGAACACAGAGACAGATGGATAGAGTGTTATCAC  400

seq1  TAGACAGACATTCCCACCATTCAGGAAGCTCAAAG-AAAAGAGAGACCAG  449
      ||| ||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TAGTCAGACATTCTCACCATTCAGGAAGCTCAAAGAAAAAGAGAGACCAG  450

seq1  GAGCCAGCTACCAACAGCAAGCTCTCTCTCTCTCTCTCTCTC  491
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTACCAACAGCAAGCTCTCTCTCTCTCTCTCTCTC  492