BAC Information

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BAC

Clone NameB6Ng01-168M18
Chromosome18 (Build37)
Map Location 64,970,695 - 65,107,225
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M18.bB6Ng01-168M18.g
ACCDH959943DH959944
length1,1711,212
definitionDH959943|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M18, 5' end.DH959944|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,970,695 - 64,971,883)(65,106,017 - 65,107,225)
sequence
gaattccttcactgaaatgccttctcagattgcatgttcatttttgcagc
tacctatgaaacctcttggtcaaaggaggaagccaatggaaggaagatgc
ctagcaacagcagaagggtgggatgcggatggtttccaagtaactggcag
catccaccatgtgagcagccatgttttccatagtccttcctacagacccc
accctggctgagatttagtggaaccagggagtaaccccagcatctccact
tgaagccaccttgaggaagctgtcaggcagcgctcacactacactcagca
agtacagtgctagtgagtctcttctcagagcgaagagaaacatgttctgc
atgatgggccaccatttgaactatggctcccttgttgctaactccaggta
gtctgtcatgggaaggtttctttttcccccagaggcgtccatctgtcaca
aatcatgatgcgcacatgcctcttgggttgtgtgggagagccttcactgc
ttttgtgtgtgtgtgttgcatgtatatgcattgctatggggttgtctact
agcgcacagccaacctaacaggggtcattcttattaatcagcacaccgag
ccaaatcagtgtcctttttttttttttcaaaacactggaatggtaaacat
tgagaataagtgtttattttggggatatatgaagtgactccccccccagg
aggtcactttaactaccaaactgaaaatgcactgcgcaccccaagacaga
gcaatatgataaacccttggaagactgaccactaagatcattaaatgttg
aaatggctggattagggctatgaagctgattttacaggaccccaatggga
tcctttcaacccttcaaatttagggcaaaaggaatgaccaactactaact
atacacccatgagtctttccaaattcatgagtctaagacactacaaataa
tattggttgacttgggctgcgagatggctcagcgggtaagagcactgatt
gctcttctgaagtctgagtcaaatcccagcaaccacatggtgctccacca
cccgtaatgaaaatctgaccccttcttctggttagtctgagaaagctaca
gtgacttatttatataataaatatcttgggccagagacagtgggacagac
cggacagttggtgaccagagc
gaattccatggaggcccccatttccagaaggaaatctaattctgtgagct
ttaagttcataccgtgtgactagactagaaaaagaggaagcgagagaaag
agacagactgatagaccaaggccaataaactaaataaatttaaaatgtaa
acagattaaaattaagtctaccactacaggagacagaacattggcccgga
gagatgcccacatcctgagccagactccgcggctctgttgggttacatgg
agaagggacattcagtctgcagttgaaattaaagtcgctagtcggctgat
cttaaaatagaaagatcatccttgattatgcaggtgagcatgaagtaatc
acaacagttctttcttgagagtagaaaagaggcctgagtaaagggggcgg
agacggccgcagccatgagcatgcgcagagagatggctgagcacgcgcag
agagatggctcagctgccattaaattggaaagggggaccttggaaagcag
gcacccccagaagctggacacggcaggatgtgatctcctagaacctcagg
aaggaatgcagccccccaaagcacatgattttagctcagtgaacacttac
tggaatatacaccacacccatacaaacacacacacacacacacacagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagaagagcgcaaaataacagatctgtattgttttcaagc
tgctgcatctgtatacatgtgtccccaggcagaggaacccatctgggtgt
ccacacaatgtcttgggatcctttctccaccaaccagaatgatttctgca
aatccatgtcaaatgctacgcaaaaaaacaaaacaaaaaaacaaaaaaaa
accaccacatactgcatttttataatcctaacaagaaaaatattacaggc
tttttaagattttctgatgatgcaacagtggaattcatctctcctacatt
ttgtgagtactttacatagtcgacctgaccagagaattctgccgtttcta
atgtaaccgggacaggaaacaactgtgagaacacatttttctggttcagt
tgctggaatttttcatttgcgaaaagttcctttcaaacaggtcatttgag
aatttattcttgccaactctgaaaaggttctgccttgccttaccaaaaga
caacacgccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_64970695_64971883
seq2: B6Ng01-168M18.b_46_1216

seq1  GAATTCCTTCACTGAAATGCCTTCTCAGATTGCATGTTCATTTTTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCACTGAAATGCCTTCTCAGATTGCATGTTCATTTTTGCAGC  50

seq1  TACCTATGAAACCTCTTGGTCAAAGGAGGAAGCCAATGGAAGGAAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATGAAACCTCTTGGTCAAAGGAGGAAGCCAATGGAAGGAAGATGC  100

seq1  CTAGCAACAGCAGAAGGGTGGGATGCGGATGGTTTCCAAGTAACTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACAGCAGAAGGGTGGGATGCGGATGGTTTCCAAGTAACTGGCAG  150

seq1  CATCCACCATGTGAGCAGCCATGTTTTCCATAGTCCTTCCTACAGACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCATGTGAGCAGCCATGTTTTCCATAGTCCTTCCTACAGACCCC  200

seq1  ACCCTGGCTGAGATTTAGTGGAACCAGGGAGTAACCCCAGCATCTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCTGAGATTTAGTGGAACCAGGGAGTAACCCCAGCATCTCCACT  250

seq1  TGAAGCCACCTTGAGGAAGCTGTCAGGCAGCGCTCACACTACACTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCACCTTGAGGAAGCTGTCAGGCAGCGCTCACACTACACTCAGCA  300

seq1  AGTACAGTGCTAGTGAGTCTCTTCTCAGAGCGAAGAGAAACATGTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTGCTAGTGAGTCTCTTCTCAGAGCGAAGAGAAACATGTTCTGC  350

seq1  ATGATGGGCCACCATTTGAACTATGGCTCCCTTGTTGCTAACTCCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGCCACCATTTGAACTATGGCTCCCTTGTTGCTAACTCCAGGTA  400

seq1  GTCTGTCATGGGAAGGTTTCTTTTTCCCCCAGAGGCGTCCATCTGTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATGGGAAGGTTTCTTTTTCCCCCAGAGGCGTCCATCTGTCACA  450

seq1  AATCATGATGCGCACATGCCTCTTGGGTTGTGTGGGAGAGCCTTCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGATGCGCACATGCCTCTTGGGTTGTGTGGGAGAGCCTTCACTGC  500

seq1  TTTTGTGTGTGTGTGTTGCATGTATATGCATTGCTATGGGGTTGTCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTGTGTGTTGCATGTATATGCATTGCTATGGGGTTGTCTACT  550

seq1  AGCGCACAGCCAACCTAACAGGGGTCATTCTTATTAATCAGCACACCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCACAGCCAACCTAACAGGGGTCATTCTTATTAATCAGCACACCGAG  600

seq1  CCAAATCAGTGTCCTTTTTTTTTTTTTCAAAACACTGGAATGGTAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAGTGTCCTTTTTTTTTTTTTCAAAACACTGGAATGGTAAACAT  650

seq1  TGAGAATAAGTGTTTATTTTGGGGATATATGAAGTGACTCCCCCCCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAAGTGTTTATTTTGGGGATATATGAAGTGACTCCCCCCCCAGG  700

seq1  AGGTCACTTTAACTACCAAACTGAAAATGCACTGCGCACCCCAAGACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTTAACTACCAAACTGAAAATGCACTGCGCACCCCAAGACAGA  750

seq1  GCAATATGATAAACCCTTGGAAGACTGACCACTAAGATCATTAAATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGATAAACCCTTGGAAGACTGACCACTAAGATCATTAAATGTTG  800

seq1  AAATGGCTGGATTAGGGCTATGAAGCTGATTTTACAGGACCCCAATGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGGATTAGGGCTATGAAGCTGATTTTACAGGACCCCAATGGGA  850

seq1  TCCTTTCAACCCTTCAAATTTAGGGCAAAAGGAATGACCAACTACTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAACCCTTCAAATTTAGGGCAAAAGGAATGACCAACTACTAACT  900

seq1  ATACACCCATGAGTCTTTCCAAATTCATGAGTCTAAGAACACTACAAATA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATACACCCATGAGTCTTTCCAAATTCATGAGTCTAAG-ACACTACAAATA  949

seq1  ATATTGGTTGACTTGGGGCTGGCGAGATGGCTCAGCGGGTAAGAGCACTG  1000
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  ATATTGGTTGACTT-GGGCT-GCGAGATGGCTCAGCGGGTAAGAGCACTG  997

seq1  ATTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC  1050
      |||||||||||||||   ||||| ||||||||||||||||||||||||  
seq2  ATTGCTCTTCTGAAG--TCTGAG-TCAAATCCCAGCAACCACATGGTG--  1042

seq1  TCACAACCACCCGTAATG-AGATCTGACACCCTCTTCTGGTAAGTCTGAA  1099
       | | ||||||||||||| | ||||||| || ||||||||| |||||| |
seq2  -CTCCACCACCCGTAATGAAAATCTGACCCCTTCTTCTGGTTAGTCTG-A  1090

seq1  GAAAGCTACAGTGAACTTATTTATAATAATAAATAAATCTTTGGGCCAGA  1149
      ||||||||||||| |||||||||| |||||||||  ||| ||||||||||
seq2  GAAAGCTACAGTG-ACTTATTTAT-ATAATAAAT--ATC-TTGGGCCAGA  1135

seq1  GCAAGTGGGACAGACCGGAGCAAGTGGGGTTGACCAGAGC  1189
      |  ||||||||||||||||   ||| ||  ||||||||||
seq2  GACAGTGGGACAGACCGGA--CAGTTGG--TGACCAGAGC  1171

seq1: chr18_65106017_65107225
seq2: B6Ng01-168M18.g_72_1283 (reverse)

seq1  AAAGACGTGTTGTCTTTTGGTAAGGGCCAGGCAGAAACCTTTTTAGAGTT  50
      |||| |||||||||||||||||| ||| |||||| |||||||| ||||||
seq2  AAAGGCGTGTTGTCTTTTGGTAA-GGCAAGGCAG-AACCTTTTCAGAGTT  48

seq1  TGCAGAGATATA-TCTCAAATGA-CTGTTTG-AGGGAACTTCT-GC-AAT  95
       |||   ||| | |||||||||| ||||||| | ||||||| | || |||
seq2  GGCAAGAATAAATTCTCAAATGACCTGTTTGAAAGGAACTTTTCGCAAAT  98

seq1  GAAAAA-TCCAGCAACTGAACGAG-AAAATGTGGTCTCACAGGTTGTTCC  143
      |||||| |||||||||||||| || |||||||| |||||||| |  ||||
seq2  GAAAAATTCCAGCAACTGAACCAGAAAAATGTGTTCTCACAGTTGTTTCC  148

seq1  TGT-CCGGGTACATTTAGAAACGGCAGGATTTCTCTGGGTCAGGTCGGCT  192
      ||| |||| |||| |||||||||||| || |||||| |||||||||| ||
seq2  TGTCCCGGTTACA-TTAGAAACGGCA-GAATTCTCT-GGTCAGGTCGACT  195

seq1  ATGTATGGTACTCACAGATTGTAGGGAGAGATG-ATTCCACTGTTGGCAT  241
      |||||  ||||||||| | |||| ||||||||| ||||||||||| ||||
seq2  ATGTAAAGTACTCACAAAATGTA-GGAGAGATGAATTCCACTGTT-GCAT  243

seq1  CATCAGAAGATCTTAGAAAGCCTGT-ATATTTTTCTTGTTAGGATTAT-A  289
      |||||||| |||||| ||||||||| |||||||||||||||||||||| |
seq2  CATCAGAAAATCTTAAAAAGCCTGTAATATTTTTCTTGTTAGGATTATAA  293

seq1  GAATGCAGTATGTGGTGGTTTTTTTTTGTTTTTTTGTTTTTGTTTTTTTG  339
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATGCAGTATGTGGTGGTTTTTTTTTGTTTTTTTG-TTTTGTTTTTTTG  342

seq1  CGTAGCATTTGACATGGATTTGCAGAAATCATTCTGGTTGGTGGAGAAAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCATTTGACATGGATTTGCAGAAATCATTCTGGTTGGTGGAGAAAG  392

seq1  GATCCCAAGACATTGTGTGGACACCCAGATGGGTTCCTCTGCCTGGGGAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAAGACATTGTGTGGACACCCAGATGGGTTCCTCTGCCTGGGGAC  442

seq1  ACATGTATACAGATGCAGCAGCTTGAAAACAATACAGATCTGTTATTTTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATACAGATGCAGCAGCTTGAAAACAATACAGATCTGTTATTTTG  492

seq1  CGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  542

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTTTGTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTTTGTA  592

seq1  TGGGTGTGGTGTATATTCCAGTAAGTGTTCACTGAGCTAAAATCATGTGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGGTGTATATTCCAGTAAGTGTTCACTGAGCTAAAATCATGTGC  642

seq1  TTTGGGGGGCTGCATTCCTTCCTGAGGTTCTAGGAGATCACATCCTGCCG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGCTGCATTCCTTCCTGAGGTTCTAGGAGATCACATCCTGCCG  692

seq1  TGTCCAGCTTCTGGGGGTGCCTGCTTTCCAAGGTCCCCCTTTCCAATTTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCTTCTGGGGGTGCCTGCTTTCCAAGGTCCCCCTTTCCAATTTA  742

seq1  ATGGCAGCTGAGCCATCTCTCTGCGCGTGCTCAGCCATCTCTCTGCGCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTGAGCCATCTCTCTGCGCGTGCTCAGCCATCTCTCTGCGCAT  792

seq1  GCTCATGGCTGCGGCCGTCTCCGCCCCCTTTACTCAGGCCTCTTTTCTAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGCTGCGGCCGTCTCCGCCCCCTTTACTCAGGCCTCTTTTCTAC  842

seq1  TCTCAAGAAAGAACTGTTGTGATTACTTCATGCTCACCTGCATAATCAAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAAAGAACTGTTGTGATTACTTCATGCTCACCTGCATAATCAAG  892

seq1  GATGATCTTTCTATTTTAAGATCAGCCGACTAGCGACTTTAATTTCAACT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTTCTATTTTAAGATCAGCCGACTAGCGACTTTAATTTCAACT  942

seq1  GCAGACTGAATGTCCCTTCTCCATGTAACCCAACAGAGCCGCGGAGTCTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGAATGTCCCTTCTCCATGTAACCCAACAGAGCCGCGGAGTCTG  992

seq1  GCTCAGGATGTGGGCATCTCTCCGGGCCAATGTTCTGTCTCCTGTAGTGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGATGTGGGCATCTCTCCGGGCCAATGTTCTGTCTCCTGTAGTGG  1042

seq1  TAGACTTAATTTTAATCTGTTTACATTTTAAATTTATTTAGTTTATTGGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAATTTTAATCTGTTTACATTTTAAATTTATTTAGTTTATTGGC  1092

seq1  CTTGGTCTATCAGTCTGTCTCTTTCTCTCGCTTCCTCTTTTTCTAGTCTA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTATCAGTCTGTCTCTTTCTCTCGCTTCCTCTTTTTCTAGTCTA  1142

seq1  GTCACACGGTATGAACTTAAAGCTCACAGAATTAGATTTCCTTCTGGAAA  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACGGTATGAACTTAAAGCTCACAGAATTAGATTTCCTTCTGGAAA  1192

seq1  TGGGGGCCTCCATGGAATTC  1209
      ||||||||||||||||||||
seq2  TGGGGGCCTCCATGGAATTC  1212