BAC Information

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BAC

Clone NameB6Ng01-169I22
Chromosome18 (Build37)
Map Location 45,228,962 - 45,230,045
singlet/doubletsinglet
Overlap geneLOC626309
Upstream geneEG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
Downstream geneLOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169I22.bB6Ng01-169I22.g
ACCDH960505DH960506
length1,0781,218
definitionDH960505|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I22, 5' end.DH960506|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcaaccttgttcagtgccagtgattatgaagtggctcctcctg
agttccatcggaaagccgtgtgaggggtgtgctctccctctctccctcgt
gcttggatctctgtaaacagtttggttcttagtccttctcttgtacaaat
gatgtactttgaagaccgttagtgtataacagagttgtttgtttcctctt
tgattttaaacagagaaaataaaaggagtaactgctccttttttcttcct
ttttttttcatttcaaagtttctaccagtgtatcagtgatggacaccaga
gagatgctgtagagtgtttgcctagttgacaaagctgcttttgaatgctg
gtggttctgttcctttgacactacgcacttttataatatgtgttaatgct
ctatgacaaatgctctgattcctagtgccaaaggttcacttcagtgtata
taactgaacactcatccatctgtgctcttttttttcttaatggtgcttaa
agagcccatcctttgcaagtcatccatgtcattccttaggcatcttatct
ttgctcaactgttaaagaatggtggcttgttttcatgggttttgtatttg
tgtctaatgcatgttttaacatgatagacgcaatgcatcgtgtagctgca
gttttatggaaaagtcaatcttgtaggagttgtttttcagatcttcaata
aattttttctttaaatttcaaaaaaaaattgtgattggccatttatgttt
gtccttcgtaaactgtctattcatttcattgcccccatttgttgattgcc
agttttaccccttttgcatgaatttctacggttctttgtaaattctgaat
agcccctatctgaagtataagtagtaaaatggtcattgaaaagttagtaa
gattgacacaccattatccaatcaaagaaaagaaacttcagacacaaatt
aacattagagatttttttaaagtgctattacagtaagttccaataaaatt
cagaaacaataatagagaatgcttttaagacttgtacctctaaaacctag
aatttaaagaacagacaatttctaaaat
gaattctttctggaggaatctcaccatccctgatcacgagctgtactacc
aagcaatactgattaaaaaaaaaaaacaaaactgtatggcatttttataa
gaaacaggtaggttgatcaatggaattgaatttaagacccagaaataaac
ctacatacctatggacacttaatttttgacagagaagccaaaactatact
atgggggaaaaagcatcttcaataaatggtacttgcctaactggatgtct
gtatgaagaagaatgcaaatagatccatatttatcactctgcacaaaaca
caagtccaaatggttcaaagacctcaacataaaaacagatacactaaatc
taatagaacagaaagtgagggatagccttgaactcatgggtacaggagac
aatttcctgaacagaacaccaatggctcaggctgtaagatcaacaattga
taaatgggatctcataaaactgaaaagctttgtaaggcaaaggacacagt
caataggacaaagtggcagcctaccaattggatttcactaaccctatatc
tgatagaaggttaacattccaaatatataaagaactcaagaagttagact
ccgtgatggtttgtatattcttggaccagggagtggcaccatttggaggt
gtggccttgttggaataggtgtgacttggttggagtaggtgtgtcactgt
gggtgtgggcataagatcctcactgtagttgcctggaagtcagccttcca
ctagcagcctttggatgaagacgtagaactctcagctcctcctacaccat
gcctgcctggatgctgccatgctcccaccttgatggtaatggactgaacc
tctgaatctgtaagccagccccaattaaatgttgttttttataagacttg
ccttggtcatggtgtctgttcacagcagtaaacctctaactaatacagac
tccaacaaaccaactaacccaattttaaaatggggtgcaaagctaaacag
aattctcaacagagaattatagaatgccgagaagcactttaagaattggt
caattatcctaatcatcagggaaatgcaaatcaaggaacctatgtccatc
ttaccccaatcgaattggctaagatcaaaacctcaggaacggccatgctc
tgtcagaatcagaagacctccaaggtgtggtacaactgtaacccctgata
caatgcagttctcgcgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45228962_45230045
seq2: B6Ng01-169I22.b_45_1122 (reverse)

seq1  ATTTTAGAAATTTGTCTGTTTCTTTTAAATTTCTAGGTTTTTAGA-GTAC  49
      |||||||||| ||||||| ||||||  || ||||||| ||||||| ||||
seq2  ATTTTAGAAA-TTGTCTG-TTCTTT--AAATTCTAGG-TTTTAGAGGTAC  45

seq1  AAGTCTTTAAAGCATTCTCTATTATTG-TTCTGGATTTTATTGGAACTTA  98
      ||||||| ||||||||||||||||||| ||||| ||||||||||||||||
seq2  AAGTCTTAAAAGCATTCTCTATTATTGTTTCTGAATTTTATTGGAACTTA  95

seq1  CTGTAATAGCACTTTAAAAAAAATCTCTAATGTTAATTTGTGTCTGAAGT  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGTAATAGCACTTT-AAAAAAATCTCTAATGTTAATTTGTGTCTGAAGT  144

seq1  TTCTTTTTCTTTGATTGGATAATGGTGTGTCAATCTTACTAACTTTTTCA  198
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTC-TTTTCTTTGATTGGATAATGGTGTGTCAATCTTACTAAC-TTTTCA  192

seq1  ATGACCATTTTACTACTTATACTTCAGATAGGGGCTATTCAGAATTTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATTTTACTACTTATACTTCAGATAGGGGCTATTCAGAATTTACA  242

seq1  AAGAACCGTAGAAATTCATGCAAAAGGGGTAAAACTGGCAATCAACAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCGTAGAAATTCATGCAAAAGGGGTAAAACTGGCAATCAACAAAT  292

seq1  GGGGGCAATGAAATGAATAGACAGTTTACGAAGGACAAACATAAATGGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAATGAAATGAATAGACAGTTTACGAAGGACAAACATAAATGGCC  342

seq1  AATCACAATTTTTTTTTGAAATTTAAAGAAAAAATTTATTGAAGATCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATTTTTTTTTGAAATTTAAAGAAAAAATTTATTGAAGATCTGA  392

seq1  AAAACAACTCCTACAAGATTGACTTTTCCATAAAACTGCAGCTACACGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTCCTACAAGATTGACTTTTCCATAAAACTGCAGCTACACGAT  442

seq1  GCATTGCGTCTATCATGTTAAAACATGCATTAGACACAAATACAAAACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCGTCTATCATGTTAAAACATGCATTAGACACAAATACAAAACCC  492

seq1  ATGAAAACAAGCCACCATTCTTTAACAGTTGAGCAAAGATAAGATGCCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACAAGCCACCATTCTTTAACAGTTGAGCAAAGATAAGATGCCTA  542

seq1  AGGAATGACATGGATGACTTGCAAAGGATGGGCTCTTTAAGCACCATTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGACATGGATGACTTGCAAAGGATGGGCTCTTTAAGCACCATTAA  592

seq1  GAAAAAAAAGAGCACAGATGGATGAGTGTTCAGTTATATACACTGAAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGAGCACAGATGGATGAGTGTTCAGTTATATACACTGAAGTG  642

seq1  AACCTTTGGCACTAGGAATCAGAGCATTTGTCATAGAGCATTAACACATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGGCACTAGGAATCAGAGCATTTGTCATAGAGCATTAACACATA  692

seq1  TTATAAAAGTGCGTAGTGTCAAAGGAACAGAACCACCAGCATTCAAAAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGTGCGTAGTGTCAAAGGAACAGAACCACCAGCATTCAAAAGC  742

seq1  AGCTTTGTCAACTAGGCAAACACTCTACAGCATCTCTCTGGTGTCCATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCAACTAGGCAAACACTCTACAGCATCTCTCTGGTGTCCATCA  792

seq1  CTGATACACTGGTAGAAACTTTGAAATGAAAAAAAAAGGAAGAAAAAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACACTGGTAGAAACTTTGAAATGAAAAAAAAAGGAAGAAAAAAGG  842

seq1  AGCAGTTACTCCTTTTATTTTCTCTGTTTAAAATCAAAGAGGAAACAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTACTCCTTTTATTTTCTCTGTTTAAAATCAAAGAGGAAACAAAC  892

seq1  AACTCTGTTATACACTAACGGTCTTCAAAGTACATCATTTGTACAAGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTATACACTAACGGTCTTCAAAGTACATCATTTGTACAAGAGA  942

seq1  AGGACTAAGAACCAAACTGTTTACAGAGATCCAAGCACGAGGGAGAGAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAAGAACCAAACTGTTTACAGAGATCCAAGCACGAGGGAGAGAGG  992

seq1  GAGAGCACACCCCTCACACGGCTTTCCGATGGAACTCAGGAGGAGCCACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACACCCCTCACACGGCTTTCCGATGGAACTCAGGAGGAGCCACT  1042

seq1  TCATAATCACTGGCACTGAACAAGGTTGCAGAATTC  1084
      ||||||||||||||||||||||||||||||||||||
seq2  TCATAATCACTGGCACTGAACAAGGTTGCAGAATTC  1078