BAC Information

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BAC

Clone NameB6Ng01-170L19
Chromosome18 (Build37)
Map Location 53,006,685 - 53,141,976
singlet/doubletdoublet
Overlap geneSncaip, LOC667317
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L19.bB6Ng01-170L19.g
ACCDH961373DH961374
length9511,095
definitionDH961373|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L19, 5' end.DH961374|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,141,018 - 53,141,976)(53,006,685 - 53,007,779)
sequence
gaattccagattaagccgagtgtggtggcgcacgcctttaatcccagcac
ttgggaggcagaggcaggcggatttctgagttcgaggtcaacctggtcta
cagagtgagttccaggacagccagggctatacagagaaaccctgtctcaa
aacacaaaaacaaaaacaacaacaacaaaaagaattccagattacccaga
gcacactcaaactctacaaacctctgctgacgaggtttgaaatgacagaa
agctaggttagaaatgggaaaaatcaggtcttttctatgattgtcagaga
gttacaaactgctatatggtatgtatacacacacacacacacacacacac
acacatatatgagttctgatttgaatagttaacatggtggactttcaggc
cacaagtgacaataattattgcttgggatctatttccttcacagtcttta
cctataaaattgttacttagtttgtcagcttctatagcatcctttctagg
taactactcagggtcatggcatgggattcagaaagtcaagtgacccccat
agagagttactctaataaagttttgtgaatctgggaacagaaactttgga
attgagatggcttgcccaatattgcagttagcctatagtagtaactcaca
gtaaaactaagagactagaccccccctccccctgttaaataaccctattt
acagtaccaaaagtacaggaaagaagaaatggatattgaattgttttact
taaaaccctttgttgggtccttctgggagactggaatattccttctgtct
gttcttaagtagccatacaataaaccttgcttaggaaaatcagttcaggg
ctgggcaaggcttggtgatttccaatgtctcaaggttcacagtcaatctt
cagcatgtgggggaagtcaagttgagataaaatcttaaatgattccccaa
g
gaattcctggaaggcatgatgctactggtccagagagcatgctttgaatg
ctgacattcattctgtctgggagagtcagctgggatattacggagatgat
agccaggcaaggctggaagaatgaaagagtgttttcctgttgcagtggga
gggaggaatggcattctgggtagacagagtagcattcataaagacacaag
aaaaccaataggtgggggactataagacatgtgctgctgctgcaagaagt
gaatgcatgtaaacagtaaggctgattgtatgccatactaaggccatggt
cagtcctacgtacatcctgcagagtcactgaagggtttcaaacagagaca
tgctcgagtaaaatttgaactaaagaaagctgataaattctaatgccaat
atgaatgctcagaagaaatccctattaactacctaaactttaaagtttct
aaacgtttaaatattacaggatcatgccttggatgtgtacatgttgctat
ttcaggtagttaattgcccctagctgccatgtgtatactcaagtcaaaga
tattgtcctttcgctcctttgcatacgggaactgctagttcaacaggaag
gagccaaggtaaagacactacagacgtttactgagagcagaaaagagaaa
catcagtaagggctgacctggggcttccaggagaaggcagagcatatgct
gactttatgggacagtggcacttcataggagaaggatcttggataagaag
gaccccagcattaaagaaacagaggaagtagattgtgttccgcaggacca
ttgaagcagctggggaaatttggtcagcctttccaggagttcttgagaca
gaggagtagtaaagattaattaaagggagcagtttctccagccactaacc
tctggaaagattcaaggaaaggacgatgttaggagaaatagtaaaaagga
aagcaacgcctctccgataactgaaagccctctctcctttgcatcaccca
gggatagataacagatatggagaacaaaggcttccaagtccgggtttgga
ggataagcaaatggaagaacacattgtcttggttgttcagtctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53141018_53141976
seq2: B6Ng01-170L19.b_52_1001 (reverse)

seq1  TTGGGGAAATCACTTTAAGAATTTTAATCTCAACCTTGGCTTTCCCCCAC  50
      |||||| ||||| |||||||  ||| ||||||| |||| | |||||||||
seq2  TTGGGG-AATCA-TTTAAGA--TTTTATCTCAA-CTTGAC-TTCCCCCAC  44

seq1  AGTGCTGAGGATTGACTGTAGAGCCTTGAGGACATTGGGAAATCACCAAG  100
      | |||||| |||||||||| || |||||| |||||| |||||||||||||
seq2  A-TGCTGAAGATTGACTGT-GAACCTTGA-GACATT-GGAAATCACCAAG  90

seq1  CCCTGCCCCAGCCCTGAACCTGATTTTCCTAAGCAAGGTTTATTGTATGG  150
      || || |||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTTG-CCCAGCCCTGAA-CTGATTTTCCTAAGCAAGGTTTATTGTATGG  138

seq1  CTACTTAAGAACAGACAGAA-GAATATTCCAGTCT-CCAGAAGGACCC-A  197
      |||||||||||||||||||| |||||||||||||| |||||||||||| |
seq2  CTACTTAAGAACAGACAGAAGGAATATTCCAGTCTCCCAGAAGGACCCAA  188

seq1  CAAGGGGTTTTAAGTAAAACAATTCAATATCCATTTCTTCTTTCCTGTAC  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTTTTAAGTAAAACAATTCAATATCCATTTCTTCTTTCCTGTAC  238

seq1  TTTTGGTACTGTAAATAGGGTTATTTAACAGGGGGAGGGGGGGTCTAGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTACTGTAAATAGGGTTATTTAACAGGGGGAGGGGGGGTCTAGTC  288

seq1  TCTTAGTTTTACTGTGAGTTACTACTATAGGCTAACTGCAATATTGGGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTTTACTGTGAGTTACTACTATAGGCTAACTGCAATATTGGGCA  338

seq1  AGCCATCTCAATTCCAAAGTTTCTGTTCCCAGATTCACAAAACTTTATTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCAATTCCAAAGTTTCTGTTCCCAGATTCACAAAACTTTATTA  388

seq1  GAGTAACTCTCTTTGGGGGTCACTTGACTTTCTGAATCCCATGCCATGAC  447
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGTAACTCTCTATGGGGGTCACTTGACTTTCTGAATCCCATGCCATGAC  438

seq1  CCTGAGTAGTTACCTAGAAAGGATGCTATAGAAGCTGACAAACTAAGTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTAGTTACCTAGAAAGGATGCTATAGAAGCTGACAAACTAAGTAA  488

seq1  CAATTTTATAGGTAAAGACTGTGAAGGAAATAGATCCCAAGCAATAATTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATAGGTAAAGACTGTGAAGGAAATAGATCCCAAGCAATAATTA  538

seq1  TTGTCACTTGTGGCCTGAAAGTCCACCATGTTAACTATTCAAATCAGAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTTGTGGCCTGAAAGTCCACCATGTTAACTATTCAAATCAGAAC  588

seq1  TCATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACATACCATATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACATACCATATA  638

seq1  GCAGTTTGTAACTCTCTGACAATCATAGAAAAGACCTGATTTTTCCCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGTAACTCTCTGACAATCATAGAAAAGACCTGATTTTTCCCATT  688

seq1  TCTAACCTAGCTTTCTGTCATTTCAAACCTCGTCAGCAGAGGTTTGTAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTAGCTTTCTGTCATTTCAAACCTCGTCAGCAGAGGTTTGTAGA  738

seq1  GTTTGAGTGTGCTCTGGGTAATCTGGAATTCTTTTTGTTGTTGTTGTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTGTGCTCTGGGTAATCTGGAATTCTTTTTGTTGTTGTTGTTTT  788

seq1  TGTTTTTGTGTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTGTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  838

seq1  GAACTCACTCTGTAGACCAGGTTGACCTCGAACTCAGAAATCCGCCTGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGTTGACCTCGAACTCAGAAATCCGCCTGCC  888

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACACTCGGCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACACTCGGCTT  938

seq1  AATCTGGAATTC  959
      ||||||||||||
seq2  AATCTGGAATTC  950

seq1: chr18_53006685_53007779
seq2: B6Ng01-170L19.g_67_1161

seq1  GAATTCCTGGAAGGCATGATGCTACTGGTCCAGAGAGCATGCTTTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAGGCATGATGCTACTGGTCCAGAGAGCATGCTTTGAATG  50

seq1  CTGACATTCATTCTGTCTGGGAGAGTCAGCTGGGATATTACGGAGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTCATTCTGTCTGGGAGAGTCAGCTGGGATATTACGGAGATGAT  100

seq1  AGCCAGGCAAGGCTGGAAGAATGAAAGAGTGTTTTCCTGTTGCAGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAAGGCTGGAAGAATGAAAGAGTGTTTTCCTGTTGCAGTGGGA  150

seq1  GGGAGGAATGGCATTCTGGGTAGACAGAGTAGCATTCATAAAGACACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAATGGCATTCTGGGTAGACAGAGTAGCATTCATAAAGACACAAG  200

seq1  AAAACCAATAGGTGGGGGACTATAAGACATGTGCTGCTGCTGCAAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAATAGGTGGGGGACTATAAGACATGTGCTGCTGCTGCAAGAAGT  250

seq1  GAATGCATGTAAACAGTAAGGCTGATTGTATGCCATACTAAGGCCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGTAAACAGTAAGGCTGATTGTATGCCATACTAAGGCCATGGT  300

seq1  CAGTCCTACGTACATCCTGCAGAGTCACTGAAGGGTTTCAAACAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTACGTACATCCTGCAGAGTCACTGAAGGGTTTCAAACAGAGACA  350

seq1  TGCTCGAGTAAAATTTGAACTAAAGAAAGCTGATAAATTCTAATGCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGAGTAAAATTTGAACTAAAGAAAGCTGATAAATTCTAATGCCAAT  400

seq1  ATGAATGCTCAGAAGAAATCCCTATTAACTACCTAAACTTTAAAGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCTCAGAAGAAATCCCTATTAACTACCTAAACTTTAAAGTTTCT  450

seq1  AAACGTTTAAATATTACAGGATCATGCCTTGGATGTGTACATGTTGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTTAAATATTACAGGATCATGCCTTGGATGTGTACATGTTGCTAT  500

seq1  TTCAGGTAGTTAATTGCCCCTAGCTGCCATGTGTATACTCAAGTCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTAGTTAATTGCCCCTAGCTGCCATGTGTATACTCAAGTCAAAGA  550

seq1  TATTGTCCTTTCGCTCCTTTGCATACGGGAACTGCTAGTTCAACAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTTTCGCTCCTTTGCATACGGGAACTGCTAGTTCAACAGGAAG  600

seq1  GAGCCAAGGTAAAGACACTACAGACGTTTACTGAGAGCAGAAAAGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGGTAAAGACACTACAGACGTTTACTGAGAGCAGAAAAGAGAAA  650

seq1  CATCAGTAAGGGCTGACCTGGGGCTTCCAGGAGAAGGCAGAGCATATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAAGGGCTGACCTGGGGCTTCCAGGAGAAGGCAGAGCATATGCT  700

seq1  GACTTTATGGGACAGTGGCACTTCATAGGAGAAGGATCTTGGATAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATGGGACAGTGGCACTTCATAGGAGAAGGATCTTGGATAAGAAG  750

seq1  GACCCCAGCATTAAAGAAACAGAGGAAGTAGATTGTGTTCCGCAGGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCATTAAAGAAACAGAGGAAGTAGATTGTGTTCCGCAGGACCA  800

seq1  TTGAAGCAGCTGGGGAAA-TTGGTCAGCCTTTCCAGGAGTTCTTGAGACA  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGAAGCAGCTGGGGAAATTTGGTCAGCCTTTCCAGGAGTTCTTGAGACA  850

seq1  GAGGAGTAGTAAAGATTTAATCAAAGGAGCAGTTTCTCCAGCCACTAACC  899
      ||||||||||||||||| | | || |||||||||||||||||||||||||
seq2  GAGGAGTAGTAAAGATTAATTAAAGGGAGCAGTTTCTCCAGCCACTAACC  900

seq1  TCTGGAAAGATTCAAGGAAAGGACGATGTTAGGAGAAAATAGTAAAAAGG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGGAAAGATTCAAGGAAAGGACGATGTTAGGAG-AAATAGTAAAAAGG  949

seq1  AAAGCAAACGCCTCTCCGATAACTGAAAGCCCTCTCTCCTTTGCATCACC  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGC-AACGCCTCTCCGATAACTGAAAGCCCTCTCTCCTTTGCATCACC  998

seq1  CAGGGATAGATAACAG-TATGGAGACAACAGGCTACACAGTCTGGG-TTG  1047
      |||||||||||||||| ||||||||  | ||||| |  |||| ||| |||
seq2  CAGGGATAGATAACAGATATGGAGAACAAAGGCTTCCAAGTCCGGGTTTG  1048

seq1  GAGGATAAGCAGATGGAAG-ACACATTGGTCTTGGTTTGTTCAGTCTAA  1095
      ||||||||||| ||||||| ||||||| ||||||| |||||||||||||
seq2  GAGGATAAGCAAATGGAAGAACACATT-GTCTTGG-TTGTTCAGTCTAA  1095