BAC Information

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BAC

Clone NameB6Ng01-172N24
Chromosome18 (Build37)
Map Location 6,489,559 - 6,490,387
singlet/doubletsinglet
Overlap geneEpc1
Upstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152
Downstream geneLOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172N24.bB6Ng01-172N24.g
ACCGA001377GA001378
length1,166834
definitionB6Ng01-172N24.b B6Ng01-172N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacttgaagaataccgaagggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat
tccatctcacaccaatcagaatggctaagatcaaaaattcaggtgacagc
agatgctgacgaggatgtggagaaagaagaacactcctccattgttagtg
ggattgcaagcttgtacagccactctggaaatcattctggccgttcctca
gaaaactggacatagtagtgccggaaaattcagcaatacctctcctgagc
attaccaagattttccaactggtaataaggacacatgctccactatgctt
atagcagccttttttttttttttaatagccagaagctgaaagatcccaga
tgtccctcaacagacgaatggatacagaaaatgtggtacatttacacaat
ggatgtgatggtttgtatattcttggaccggggagtggcaccatctggag
gtgtggccttgatggaataggtgtgacctggttggaataggtgtgtcact
atgggtgtggtctaaagactctcaccccagttgcctggaagtcagtcttc
cactagcagcctttggatgaagacatagaactctcagctctgcctgtgcc
atgacagcctggatgctgccatgctcccaccttgatgataatagactgaa
cctctgaacctgtaagccagccccaattaaatggtgtttttttataagac
ttgccttggtcatggtttctgttcacagcagtaaaaccctaactaagaca
atgaagtactactcagctattaaaaacaaatgaattcatgaaattctttg
gacaaattgatgtatctggaggatatcatcctgagtgaggtaacccaatc
acaaaagaactcacatgatatgcactcactgataagtggatattagccca
gaaacataaaccacccaagaatacatttggaaacactagaaatcaagaga
ttgaagaccaaaggtgtggatatacttcatctctcttagaataggaacaa
actactcaatggaagagttaaggaacaaggtttgaagctagattatgaat
ggacatatccagaaaattctcactcctggaatcattctatatccgtcccc
atagccggaacctatg
gaattcattcaacgttagctacgtaagctattaatacaaaaggaccttag
agctttaacattcattgagaagtttattctctatctcttctcctgaaaac
aggcgaacctaaataatttacaaagaactaaaaagttgcagactttagaa
cagagttacttactgtaaacaaatctgcaacattgtctcaaagatcaaaa
aagtaggagacaggtttttttcttcccaccagcactgcgggtggaagcaa
gaatatacccggagtttcaaaatcttctataaatgtaatggcgtctgggc
agaccccgagcaccctcgccatttcctttcaggaaggggagagaaatcag
cctgagccccgtagtcagcatgacaggcccctcggaggctccacgtgggg
accgcaccgagcccacgggcaaacacgctcccagcctgagcccgcagccg
ctgccaggccccgacggccccggagcgccacctagcggccctcagaggga
cctgcaggcgcggcccactcccggctcgcggcacccccaccgccgcccag
cccgcttccctctccggatgtgcacaaggcccaacccaagaactgagacc
acaaaatggctgccggcggctttcgtcacgtgacccctttgtgcctttcg
ggcccccgaactccgcgggacccaggtaccagtggccgaggacggcggga
ggccttcgagggggctccgccgggccttagcgcccgggaccgagcacccg
ggaggcgggggggtaccggcctggctcggcgaccgagagtcggccgcgga
gatgaagatgtgcggcaattttggtgtgggtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_6489559_6490387
seq2: B6Ng01-172N24.g_68_901

seq1  GAATTCATTCAACGTTAGCTACGTAAGCTATTAATACAAAAGGACCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAACGTTAGCTACGTAAGCTATTAATACAAAAGGACCTTAG  50

seq1  AGCTTTAACATTCATTGAGAAGTTTATTCTCTATCTCTTCTCCTGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAACATTCATTGAGAAGTTTATTCTCTATCTCTTCTCCTGAAAAC  100

seq1  AGGCGAACCTAAATAATTTACAAAGAACTAAAAAGTTGCAGACTTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAACCTAAATAATTTACAAAGAACTAAAAAGTTGCAGACTTTAGAA  150

seq1  CAGAGTTACTTACTGTAAACAAATCTGCAACATTGTCTCAAAGATCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTACTTACTGTAAACAAATCTGCAACATTGTCTCAAAGATCAAAA  200

seq1  AAGTAGGAGACAGGTTTTTTTCTTCCCACCAGCACTGCGGGTGGAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAGACAGGTTTTTTTCTTCCCACCAGCACTGCGGGTGGAAGCAA  250

seq1  GAATATACCCGGAGTTTCAAAATCTTCTATAAATGTAATGGCGTCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACCCGGAGTTTCAAAATCTTCTATAAATGTAATGGCGTCTGGGC  300

seq1  AGACCCCGAGCACCCTCGCCATTTCCTTTCAGGAAGGGGAGAGAAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCGAGCACCCTCGCCATTTCCTTTCAGGAAGGGGAGAGAAATCAG  350

seq1  CCTGAGCCCCGTAGTCAGCATGACAGGCCCCTCGGAGGCTCCACGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCCCGTAGTCAGCATGACAGGCCCCTCGGAGGCTCCACGTGGGG  400

seq1  ACCGCACCGAGCCCACGGGCAAACACGCTCCCAGCCTGAGCCCGCAGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACCGAGCCCACGGGCAAACACGCTCCCAGCCTGAGCCCGCAGCCG  450

seq1  CTGCCAGGCCCCGACGGCCCCGGAGCGCCACCTAGCGGCCCTCAGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGCCCCGACGGCCCCGGAGCGCCACCTAGCGGCCCTCAGAGGGA  500

seq1  CCTGCAGGCGCGGCCCACTCCCGGCTCGCGGCACCCCCACCGCCGCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGCGCGGCCCACTCCCGGCTCGCGGCACCCCCACCGCCGCCCAG  550

seq1  CCCGCTTCCCTCTCCGGATGTGCACAAGGCCCAACCCAAGAACTGAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTCCCTCTCCGGATGTGCACAAGGCCCAACCCAAGAACTGAGACC  600

seq1  ACAAAATGGCTGCCGGCGGC-TTCGTCACGTGACCCCTTTGTGCCTTTCG  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAAAATGGCTGCCGGCGGCTTTCGTCACGTGACCCCTTTGTGCCTTTCG  650

seq1  GGCCCCCGAACTCCGCGGGACCCAGGTACCAGTGGCCGAGGACGGCGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCGAACTCCGCGGGACCCAGGTACCAGTGGCCGAGGACGGCGGGA  700

seq1  GGCCTTCGAGGGGGCTCCGCCGGGCCTTAGCGCCCGGGACCGAGCACCCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCCTTCGAGGGGGCTCCGCCGGGCCTTAGCGCCCGGGACCGAGCACCC-  749

seq1  GGGAGGCGGGGGGG-ACCGGCCGGGC-CGGCGACCGAGAGTCGGCGGCGG  797
      |||||||||||||| ||||||| ||| |||||||||||||||||| ||||
seq2  GGGAGGCGGGGGGGTACCGGCCTGGCTCGGCGACCGAGAGTCGGCCGCGG  799

seq1  AGA-GAAGATG-GCGGCCATTTT-GTGTGGGTCTG  829
      ||| ||||||| ||||| ||||| |||||||||||
seq2  AGATGAAGATGTGCGGCAATTTTGGTGTGGGTCTG  834