BAC Information

Click to search

BAC

Clone NameB6Ng01-175J08
Chromosome18 (Build37)
Map Location 88,445,230 - 88,446,404
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961
Downstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175J08.bB6Ng01-175J08.g
ACCGA003349GA003350
length1,1801,017
definitionB6Ng01-175J08.b B6Ng01-175J08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagttgtagacccacaatacagcagagtccaacaactctgatg
taaagttccatctcattcactcttctaggatatatcccagtctagagaag
gtgggaacactagttggttaaatgacacataccccactcctcacctagga
accagaagtgaccttctaatgtataacctgaacctttataagtccctgtt
ttgagtactccaggatatcaagctgacttacttaaaaaaaaacaaataaa
caaacaaaaaccaaagcaacaacaaaacagtcgtcaaggtctcttttgtg
tagctgcagctgccaaatccctatccttccctatcccattcgcagagcaa
tgtgctatagtccttgataacccaagctgccatcgcatgtcacagctcct
atcagctgttatacctgtgcttgtccttcctaggatgcattttcctgtta
atccttcaaaactcaatttgtacagaagaaattccctcattaaaaattga
atttagatgatcttttttttttgatccacatttaacacaaccttctccag
gaatcacaacactaatcatgctgtaatatagccatggcttctttctcact
agacctggacttctctcaggaaagttttttaacctgtaacttatctactc
acatataattctcacatacaaattcaaaaaatgattgtcaaagtgggaaa
taagcatgcaaaataactggtttattgctccatactagacaaactaattt
ttctgataaaaaaaaaaaaacaaaaaaaaaaacatgcccatgtgatgaat
gctgatatctagtgggagagggtctaccataggaactgcccccaagattc
cagagcccttttccaagtgacagacccaatagaaataaacagcattattg
ggacctgttttctgttgtctcttccccatctacctcaacactgccaaaag
ctgacacattaattgaaatttatttcagaacatcttgtcttcaagatgtt
gaagatgtcatgaaaattccagagattaatcggcctctgcagaacagaat
aataatggtttcttgaaagacatctgagaaagcattcaattagaaatctg
caagcatttcattaatttatactatcagaagattgcctgtgctcactcat
tataaggaaattaatactgcagccatggta

gaattctttgtttagctctgagcctcatttttttaatggcgttatttgat
tttctggagttcaccttctcttgagttctttatatatattgcatattagt
cccctatctgatttaggataggtaaggatcctttcccaatctgttggtgg
cctttttgttttattgatggtgtcttttgccttgcagaagctttgcgatt
ttatgaggttccatttgtggattcatgatcatataaaaacaagctattgc
tgttctattcaggaatttttcccctttacccatatcttcgaggcttttcc
ctactttctcctctataagtttcagtgtctctggttttatgtgaagttcc
ttaatccacttacatttgaccttagtacaaggagatggatcaatttgcat
tctcctacatgataactgccagttgtgccagcaccatttgttgaaaatgc
tttcttttttccagtggatggtttgagctcccttgtcaaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcaattttattccattggtc
tacttgtctgttgctataccagtaccatgcagtttttatcacaactgctc
tgtagtacagcattaggtcaggcatggtgatacaacaggaggtattttta
tccttgagcagagtttttgccatcctaggttttttgttattccagatgaa
tttgcagattaccctttctaattcgttgaagaatttgagttggaattttc
ccctattttttttctaagcctgtttatcttttgtgtataggaaggctcct
gattttctttgagttaattttatatctggacccattgatgaagttgttta
ttagctttaggagttctctggtggagtttttgggggtgtttaagtatact
aaccacttcatcctgccaaaagggataatttggacttcttccctttccca
tttggatccctttggatctcctttggtttcctaatttctctagctttgta
tctttcatggacttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88445230_88446404
seq2: B6Ng01-175J08.b_44_1223 (reverse)

seq1  TACCATGGCTTGCAGTTTATGTAATTCCTTTATTATTGAGGTTGAGCACA  50
      ||||||||| |||||| |   ||||| | ||| || ||||  ||||||||
seq2  TACCATGGC-TGCAGTAT---TAATTTCCTTA-TAATGAG--TGAGCACA  43

seq1  -GCAATCCTCTTGATAGTATAAATTAATGAAATGC-TGCAGAATTCTAAT  98
       |||||| || |||||||||||||||||||||||| |||||| |||||||
seq2  GGCAATCTTC-TGATAGTATAAATTAATGAAATGCTTGCAGATTTCTAAT  92

seq1  TGATGGCTTTCTCAGATGTC-TTCA--GAACCATTATTATTCTG-TCTGC  144
      |||  ||||||||||||||| ||||   |||||||||||||||| |||||
seq2  TGAATGCTTTCTCAGATGTCTTTCAAGAAACCATTATTATTCTGTTCTGC  142

seq1  AGAGGCCGA-TAATCTCTGGAAATTTCATGACATCTTC-ACATCTTG-AG  191
      ||||||||| |||||||||||| ||||||||||||||| |||||||| ||
seq2  AGAGGCCGATTAATCTCTGGAATTTTCATGACATCTTCAACATCTTGAAG  192

seq1  AC-AGATGTTCTGAAATAATTTTCAATT-ATGTGTCAGCTTTTGGCAGTG  239
      || |||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ACAAGATGTTCTGAAATAAATTTCAATTAATGTGTCAGCTTTTGGCAGTG  242

seq1  -TGAGGTAGATGGGGAAGAGACAACAGAAAACAGGTTCCAAT-ATGCTGT  287
       ||||||||||||||||||||||||||||||||||| ||||| |||||| 
seq2  TTGAGGTAGATGGGGAAGAGACAACAGAAAACAGGTCCCAATAATGCTG-  291

seq1  TTTATTTCTATTGGGTCTGTCACTTGG-AAAGGGCTCTGGAATCTTGGGG  336
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTATTTCTATTGGGTCTGTCACTTGGAAAAGGGCTCTGGAATCTTGGGG  341

seq1  GCAGTTCCTATGGTAGACCCTCTCCCACTAGATATCAGCATTCATCACAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCTATGGTAGACCCTCTCCCACTAGATATCAGCATTCATCACAT  391

seq1  GGGCATGTTTTTTTTTTTGTTTTTTTTTTTTTATCAGAAAAATTAGTTTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTTTTTTTTTTTGTTTTTTTTTTTTTATCAGAAAAATTAGTTTG  441

seq1  TCTAGTATGGAGCAATAAACCAGTTATTTTGCATGCTTATTTCCCACTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTATGGAGCAATAAACCAGTTATTTTGCATGCTTATTTCCCACTTT  491

seq1  GACAATCATTTTTTGAATTTGTATGTGAGAATTATATGTGAGTAGATAAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCATTTTTTGAATTTGTATGTGAGAATTATATGTGAGTAGATAAG  541

seq1  TTACAGGTTAAAAAACTTTCCTGAGAGAAGTCCAGGTCTAGTGAGAAAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTTAAAAAACTTTCCTGAGAGAAGTCCAGGTCTAGTGAGAAAGA  591

seq1  AGCCATGGCTATATTACAGCATGATTAGTGTTGTGATTCCTGGAGAAGGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGCTATATTACAGCATGATTAGTGTTGTGATTCCTGGAGAAGGT  641

seq1  TGTGTTAAATGTGGATCAAAAAAAAAAGATCATCTAAATTCAATTTTTAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAATGTGGATCAAAAAAAAAAGATCATCTAAATTCAATTTTTAA  691

seq1  TGAGGGAATTTCTTCTGTACAAATTGAGTTTTGAAGGATTAACAGGAAAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAATTTCTTCTGTACAAATTGAGTTTTGAAGGATTAACAGGAAAA  741

seq1  TGCATCCTAGGAAGGACAAGCACAGGTATAACAGCTGATAGGAGCTGTGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTAGGAAGGACAAGCACAGGTATAACAGCTGATAGGAGCTGTGA  791

seq1  CATGCGATGGCAGCTTGGGTTATCAAGGACTATAGCACATTGCTCTGCGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGATGGCAGCTTGGGTTATCAAGGACTATAGCACATTGCTCTGCGA  841

seq1  ATGGGATAGGGAAGGATAGGGATTTGGCAGCTGCAGCTACACAAAAGAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAGGGAAGGATAGGGATTTGGCAGCTGCAGCTACACAAAAGAGA  891

seq1  CCTTGACGACTGTTTTGTTGTTGCTTTGGTTTTTGTTTGTTTATTTGTTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACGACTGTTTTGTTGTTGCTTTGGTTTTTGTTTGTTTATTTGTTT  941

seq1  TTTTTTAAGTAAGTCAGCTTGATATCCTGGAGTACTCAAAACAGGGACTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTAAGTCAGCTTGATATCCTGGAGTACTCAAAACAGGGACTT  991

seq1  ATAAAGGTTCAGGTTATACATTAGAAGGTCACTTCTGGTTCCTAGGTGAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGTTCAGGTTATACATTAGAAGGTCACTTCTGGTTCCTAGGTGAG  1041

seq1  GAGTGGGGTATGTGTCATTTAACCAACTAGTGTTCCCACCTTCTCTAGAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGTATGTGTCATTTAACCAACTAGTGTTCCCACCTTCTCTAGAC  1091

seq1  TGGGATATATCCTAGAAGAGTGAATGAGATGGAACTTTACATCAGAGTTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATATCCTAGAAGAGTGAATGAGATGGAACTTTACATCAGAGTTG  1141

seq1  TTGGACTCTGCTGTATTGTGGGTCTACAACTGTGAATTC  1175
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTCTGCTGTATTGTGGGTCTACAACTGTGAATTC  1180


| Home | SequenceCutter | Blast | Download |