BAC Information

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BAC

Clone NameB6Ng01-176C05
Chromosome18 (Build37)
Map Location 56,200,643 - 56,201,771
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043089, LOC667401, LOC667409, LOC629043, LOC100043099, LOC629057
Downstream geneLOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176C05.bB6Ng01-176C05.g
ACCGA003753GA003754
length1,2321,116
definitionB6Ng01-176C05.b B6Ng01-176C05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttctcctagtggttgtcttatcttctttcttttataagacat
catggtcaatttatttaaaaaaagagtttaatttgggttactattccaga
gggtcagagtatatgatggagtgaaggtatgactggaacagtagctgaga
gaatacatctgatctacaggtaggtggcagagagcacactggcaatgcaa
gagatttttataactcaaagcccacccccagggacacaactcctaatcct
tcccaaatagttccacagaacatacagtgtagttggaaaagaggaattgg
ggcataagaggaaatactctaggaaagcaaaatcaaaacctagaaggtga
actccaaatcctgaaccttcaagtctgatgacagagggcttatttgactc
agcccatccagctttgctgcctgtaggatactatttctcttgggctggct
ccactccctgtctgtagttctctttgtcagctatctcattgctttggcat
tgccaacatcttgtggtctccagctcaactcaggcttcactgtcacagtt
tcacacaatggcctctttgggccttcacacagagacacctctgatgcaca
cctggcttcagtggtgtttttcaaccttggaaggagagcccagaaccttg
atagtcatgtatccttcaggactcttaagctaacaccacgtgaacaacac
tgccaagtttgtctgcatgcttgggatggtgcctgccactattgagtcac
attttcagatatttacttttattattgctttctaggaacagaaaattccc
taggccctttcttcttacaagttggcagcttagttgggtagggtcttgtc
tgagggcacccttctctttattgtaatttggatcagcctctccttcattt
cttaatctctttaccataagccttggttctaacattaagtttttggggtc
tctttttatcctcaaactgtatagtttgttattttattttgcccacttgg
tctttttcatgtagacctgtagaagagtgattgctaatatgaagtgacga
gtcatatagggctgtttgaaatctcctcaccagagaactagtccattgtt
tttccatttagcccagcaatctttagacagggccgaagcagcacacctct
gcacaatgttactggatggtctagcagtactggaagtccttgatgactct
gagctgggctcataggcccattttacttgacg
gaattcatttgttcggctttagcatgaggtatgcctccaggcaatatatg
aatgcaaatgctatattgctgctatatattttagaaacagccaacaacca
taaattcattggttgggcagctatattatgcagtatctaaaaactgtaag
actaagacatatcctttcctacccctaaaatacacggaattaattaaatc
agtattcttccaataatagagaaaagaaggacagatacacttttcaaaac
acaagtagtcaggtggcatagggcatatctttaacctcaacattcagaaa
gcagaagcaggaaaatctctgtgagttttaggcagtctagttcagataga
gagtttcagaccagccaaaactacatagtaagaccatgtctcaaaaaaaa
gaaaagtaattacttaaacttattatcatgataatttagtaacataaata
cttgtcaaaagtgaagcaatggctaacttccttgcaatcaactagctatt
gagccctaggaaactaacattgaattgcattcttttctgcagaaatctgc
aaagcatttaggatacttactgagactgttatccaaagataatagtctaa
ggcaataattaattaagtagtgtgtgtgtgtgtgtcccttccatagaaca
cccagtaacaaaatgctgaaaatctagatatgtgaaatatggaatttaaa
aaccttaattggaagtaatattagacaatgaaagtatagtaaaatcaaaa
tgaggataaagacctctttttgatggattgtgaattacaggcttgaaatt
tactaacatctcacataaacacacacatgcatgcacacacatacacagca
caatatatttgtacacacaaacaaataaagtagtcttagttaaggaacac
attcctttatgatgatacattgtccataaagccacatactttctctctgt
taacagtaactttagtatcataaagctaaacaaagtatcatataatgaat
gtgcatctagagactgatcatagagactcatccttgtaaaatgagtctga
agtccacatttgtaaatgacagtggtacatccttggagtcctctcaattc
cacctgctcagtgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56200643_56201771
seq2: B6Ng01-176C05.g_61_1176

seq1  GAATTCATTTGTTCGGCTTTAGCATGAGGTATGCCTCCAGGCAATATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTTCGGCTTTAGCATGAGGTATGCCTCCAGGCAATATATG  50

seq1  AATGCAAATGCTATATTGCTGCTATATATTTTAGAAACAGCCAACAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATGCTATATTGCTGCTATATATTTTAGAAACAGCCAACAACCA  100

seq1  TAAATTCATTGGTTGGGCAGCTATATTATGCAGTATCTAAAAACTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATTGGTTGGGCAGCTATATTATGCAGTATCTAAAAACTGTAAG  150

seq1  ACTAAGACATATCCTTTCCTACCCCTAAAATACACGGAATTAATTAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACATATCCTTTCCTACCCCTAAAATACACGGAATTAATTAAATC  200

seq1  AGTATTCTTCCAATAATAGAGAAAAGAAGGACAGATACACTTTTCAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTTCCAATAATAGAGAAAAGAAGGACAGATACACTTTTCAAAAC  250

seq1  ACAAGTAGTCAGGTGGCATAGGGCATATCTTTAACCTCAACATTCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGTCAGGTGGCATAGGGCATATCTTTAACCTCAACATTCAGAAA  300

seq1  GCAGAAGCAGGAAAATCTCTGTGAGTTTTAGGCAGTCTAGTTCAGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAGGAAAATCTCTGTGAGTTTTAGGCAGTCTAGTTCAGATAGA  350

seq1  GAGTTTCAGACCAGCCAAAACTACATAGTAAGACCATGTCTCAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAGACCAGCCAAAACTACATAGTAAGACCATGTCTCAAAAAAAA  400

seq1  GAAAAGTAATTACTTAAACTTATTATCATGATAATTTAGTAACATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAATTACTTAAACTTATTATCATGATAATTTAGTAACATAAATA  450

seq1  CTTGTCAAAAGTGAAGCAATGGCTAACTTCCTTGCAATCAACTAGCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAAAGTGAAGCAATGGCTAACTTCCTTGCAATCAACTAGCTATT  500

seq1  GAGCCCTAGGAAACTAACATTGAATTGCATTCTTTTCTGCAGAAATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGGAAACTAACATTGAATTGCATTCTTTTCTGCAGAAATCTGC  550

seq1  AAAGCATTTAGGATACTTACTGAGACTGTTATCCAAAGATAATAGTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTAGGATACTTACTGAGACTGTTATCCAAAGATAATAGTCTAA  600

seq1  GGCAATAATTAATTAAGTAGTGTGTGTGTGTGTGTCCCTTCCATAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAATTAATTAAGTAGTGTGTGTGTGTGTGTCCCTTCCATAGAACA  650

seq1  CCCAGTAACAAAATGCTGAAAATCTAGATATGTGAAATATGGAATTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAACAAAATGCTGAAAATCTAGATATGTGAAATATGGAATTTAAA  700

seq1  AACCTTAATTGGAAGTAATATTAGACAATGAAAGTATAGTAAAATCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAATTGGAAGTAATATTAGACAATGAAAGTATAGTAAAATCAAAA  750

seq1  TGAGGATAAAGACCTCTTTTTGATGGATTGTGAATTACAGGCTTGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATAAAGACCTCTTTTTGATGGATTGTGAATTACAGGCTTGAAATT  800

seq1  TACTAACATCTCACATAAACACACACATGCATGCACACACATACACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACATCTCACATAAACACACACATGCATGCACACACATACACAGCA  850

seq1  CAATATATTTGTACACACAAACAAATAAGGTAGTCTTAGTTAAGGAACAC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAATATATTTGTACACACAAACAAATAAAGTAGTCTTAGTTAAGGAACAC  900

seq1  ATTCCTTTATGATGATAACATTGTCCATAAGGCCACATACTTTCTCTCTG  950
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  ATTCCTTTATGATGAT-ACATTGTCCATAAAGCCACATACTTTCTCTCTG  949

seq1  TTAACAGTAACTTTAGTATCATAAAGCTAAACAAAGTTATCATTATAAAT  1000
      |||||||||||||||||||||||||||||||||||| ||||| ||| |||
seq2  TTAACAGTAACTTTAGTATCATAAAGCTAAACAAAG-TATCA-TAT-AAT  996

seq1  GAATGTGCATTCTTAGGAGA-ACTGAATCATAGAGACTTCCATCC-TGTA  1048
      ||||||||| |||    ||| |||| ||||||||||||  ||||| ||||
seq2  GAATGTGCA-TCT----AGAGACTG-ATCATAGAGACT--CATCCTTGTA  1038

seq1  AAATGAGGTCTGAAAGTCACATTTGTACAATGACAGTGGTTTACATCTCT  1098
      |||||| |||||||   |||||||||| |||||||||||  ||||||  |
seq2  AAATGA-GTCTGAAGTCCACATTTGTA-AATGACAGTGG--TACATCCTT  1084

seq1  GAGTTCCTCTC-ATTCCACCTGCTCAGTGAAC  1129
      |   ||||||| ||||||||||||||||||||
seq2  GGAGTCCTCTCAATTCCACCTGCTCAGTGAAC  1116