BAC Information

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BAC

Clone NameB6Ng01-178L02
Chromosome18 (Build37)
Map Location 38,219,754 - 38,349,938
singlet/doubletdoublet
Overlap genenone
Upstream genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Downstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178L02.bB6Ng01-178L02.g
ACCGA005607GA005608
length5051,048
definitionB6Ng01-178L02.b B6Ng01-178L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,349,428 - 38,349,938)(38,219,754 - 38,220,802)
sequence
catgattgaacctgtctggagacaggtgagggtttgtaggtgagctgttt
gcgcacctgtctgaaggcagattcggtgtgtgagagagaagagtgctggg
gagtgaagctgaaagaactgcacctactttagggagttggggggggactg
tcctagagggcagcagaatagtgacagcgggccacaggtgggtaaggaag
gctgtgcttgcctgaggggcgtgtgcttctgagctcgcacctcaggtcag
aagcagaatgtgtatgctaaggagaggccatagagcagagatttttgagg
gtgccatccctaatggctgttcctgctcttctgcagacctccgccctttg
cccgacgtcgccatgacgggcacatgtacccgggagtgcagcgagtttgg
tcactctgacacatgctggatgcctggccagtcgtctcccagccgccgga
ccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccga
ggagg
gaattctttgacatgttgtatatccagggacaacttgctgatctctctga
gctttggtctccatatccttcaaatgggggaagatattgccatgggatta
tgtggggatcccatatagttatcagggcttgtgagggacagtgtggacca
gtggtagccactgctctggaatgccagccatcatttacagcttctcttcc
tgctgtgccatgagctgtgtctgctccacactggccacatgttcagtttg
ataggctggtagttggactgtttctgatagtatcagtaagccacaacagc
caagctctaattctggagccagagacaggagttcaaatcccagtgtggca
tcggacactgaacttttcaaagttttgatttcttcacttctaaaaaggaa
gcgggttttatggagattaaataggacggtgctcagcattttccaggccc
ttcctggacattgctataaaaggttttatgctgtaatggggaaagcctct
gatttgagatcaagagatctaggttaaatccacctccatctcttatttac
tgtactatctttaggcaattgttgcacctctagttcccaatatatagaaa
aaaacatgtcaagtgcggctctaaggctcgcacttgctatcccagcactt
agcaggtcaaggcagagagggtgcaatgagttttaggtctgtctgggcta
cagagtgaggtacagtctcaaaaccaaccaaccaacaaccaacaacactc
cagaaagaaagcacatgacagtgtaaaatcatccggtcttaagtcgccat
gaagaaaactgagaacccagcatgatgcttactgcctatagaatgaataa
cagcagtgacgagatctcagatctggattgagaagaacctagctttgtat
ttgctttgtgtgtgacttgggacaatgacttcacctctatgaacctttga
attctcttgctataaaagtaggatatatgtatccccagcatcatcatgga
attaaatagacaggtaatattaaaacacctcataaaccataggacgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38349428_38349938
seq2: B6Ng01-178L02.b_42_552 (reverse)

seq1  CCTCCTCGGTCCTGGTAAGGCACGAAGGTGGAGAGTTTGAGGGCGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCGGTCCTGGTAAGGCACGAAGGTGGAGAGTTTGAGGGCGCTGCT  50

seq1  CTTGGTCCGGCGGCTGGGAGACGACTGGCCAGGCATCCAGCATGTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCGGCGGCTGGGAGACGACTGGCCAGGCATCCAGCATGTGTCAG  100

seq1  AGTGACCAAACTCGCTGCACTCCCGGGTACATGTGCCCGTCATGGCGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAAACTCGCTGCACTCCCGGGTACATGTGCCCGTCATGGCGACG  150

seq1  TCGGGCAAAGGGCGGAGGTCTGCAGAAGAGCAGGAACAGCCATTAGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCAAAGGGCGGAGGTCTGCAGAAGAGCAGGAACAGCCATTAGGGAT  200

seq1  GGCACCCTCAAAAATCTCTGCTCTATGGCCTCTCCTTAGCATACACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTCAAAAATCTCTGCTCTATGGCCTCTCCTTAGCATACACATTC  250

seq1  TGCTTCTGACCTGAGGTGCGAGCTCAGAAGCACACGCCCCTCAGGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGACCTGAGGTGCGAGCTCAGAAGCACACGCCCCTCAGGCAAGC  300

seq1  ACAGCCTTCCTTACCCACCTGTGGCCCGCTGTCACTATTCTGCTGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTCCTTACCCACCTGTGGCCCGCTGTCACTATTCTGCTGCCCTC  350

seq1  TAGGACAGTCCCCCCCCAACTCCCTAAAGTAGGTGCAGTTCTTTCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTCCCCCCCCAACTCCCTAAAGTAGGTGCAGTTCTTTCAGCTT  400

seq1  CACTCCCCAGCACTCTTCTCTCTCACACACCGAATCTGCCTTCAGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCAGCACTCTTCTCTCTCACACACCGAATCTGCCTTCAGACAGG  450

seq1  TGCGCAAACAGCTCACCTACAAACCCTCACCTGTCTCCAGACAGGTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAAACAGCTCACCTACAAACCCTCACCTGTCTCCAGACAGGTTCAA  500

seq1  TCATGGAATTC  511
      |||||||||||
seq2  TCATGGAATTC  511

seq1: chr18_38219754_38220802
seq2: B6Ng01-178L02.g_62_1109

seq1  GAATTCTTTGACATGTTGTATATCCAGGGACAACTTGCTGATCTCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACATGTTGTATATCCAGGGACAACTTGCTGATCTCTCTGA  50

seq1  GCTTTGGTCTCCATATCCTTCAAATGGGGGAAGATATTGCCATGGGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTCTCCATATCCTTCAAATGGGGGAAGATATTGCCATGGGATTA  100

seq1  TGTGGGGATCCCATATAGTTATCAGGGCTTGTGAGGGACAGTGTGGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGATCCCATATAGTTATCAGGGCTTGTGAGGGACAGTGTGGACCA  150

seq1  GTGGTAGCCACTGCTCTGGAATGCCAGCCATCATTTACAGCTTCTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCCACTGCTCTGGAATGCCAGCCATCATTTACAGCTTCTCTTCC  200

seq1  TGCTGTGCCATGAGCTGTGTCTGCTCCACACTGGCCACATGTTCAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCCATGAGCTGTGTCTGCTCCACACTGGCCACATGTTCAGTTTG  250

seq1  ATAGGCTGGTAGTTGGACTGTTTCTGATAGTATCAGTAAGCCACAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGGTAGTTGGACTGTTTCTGATAGTATCAGTAAGCCACAACAGC  300

seq1  CAAGCTCTAATTCTGGAGCCAGAGACAGGAGTTCAAATCCCAGTGTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTAATTCTGGAGCCAGAGACAGGAGTTCAAATCCCAGTGTGGCA  350

seq1  TCGGACACTGAACTTTTCAAAGTTTTGATTTCTTCACTTCTAAAAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACACTGAACTTTTCAAAGTTTTGATTTCTTCACTTCTAAAAAGGAA  400

seq1  GCGGGTTTTATGGAGATTAAATAGGACGGTGCTCAGCATTTTCCAGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTTTTATGGAGATTAAATAGGACGGTGCTCAGCATTTTCCAGGCCC  450

seq1  TTCCTGGACATTGCTATAAAAGGTTTTATGCTGTAATGGGGAAAGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGACATTGCTATAAAAGGTTTTATGCTGTAATGGGGAAAGCCTCT  500

seq1  GATTTGAGATCAAGAGATCTAGGTTAAATCCACCTCCATCTCTTATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGATCAAGAGATCTAGGTTAAATCCACCTCCATCTCTTATTTAC  550

seq1  TGTACTATCTTTAGGCAATTGTTGCACCTCTAGTTCCCAATATATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATCTTTAGGCAATTGTTGCACCTCTAGTTCCCAATATATAGAAA  600

seq1  AAAACATGTCAAGTGCGGCTCTAAGGCTCGCACTTGCTATCCCAGCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTCAAGTGCGGCTCTAAGGCTCGCACTTGCTATCCCAGCACTT  650

seq1  AGCAGGTCAAGGCAGAGAGGGTGCAATGAGTTTTAGGTCTGTCTGGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCAAGGCAGAGAGGGTGCAATGAGTTTTAGGTCTGTCTGGGCTA  700

seq1  CAGAGTGAGGTACAGTCTCAAAACCAACCAACCAACAACCAACAACACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGGTACAGTCTCAAAACCAACCAACCAACAACCAACAACACTC  750

seq1  CAGAAAGAAAGCACATGACAGTGTAAAATCATCCGGTCTTAAGTCGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAGCACATGACAGTGTAAAATCATCCGGTCTTAAGTCGCCAT  800

seq1  GAAGAAAACTGAGAACCCAGCATGATGCTTACTGCCTATAGAATGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACTGAGAACCCAGCATGATGCTTACTGCCTATAGAATGAATAA  850

seq1  CAGCAGTGACGAGATCTCAGATCTGGATTGAG-AGAACCTAGCTTTGTAT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGCAGTGACGAGATCTCAGATCTGGATTGAGAAGAACCTAGCTTTGTAT  900

seq1  TTGCTTTGTGTGTGACTTGGGACAAATGACTTCACCTCTATGAACC-TTG  948
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TTGCTTTGTGTGTGACTTGGGAC-AATGACTTCACCTCTATGAACCTTTG  949

seq1  AATTCTCTTGCTATAAAAGTAGGATAATATGTATCCCCAGCATCATCATG  998
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTCTCTTGCTATAAAAGTAGGAT-ATATGTATCCCCAGCATCATCATG  998

seq1  GAATTAAATTAGACAGTTAATATTAAAACACCTCATAAACCATAGGACGT  1048
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTAAA-TAGACAGGTAATATTAAAACACCTCATAAACCATAGGACGT  1047

seq1  C  1049
      |
seq2  C  1048