BAC Information

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BAC

Clone NameB6Ng01-180D14
Chromosome18 (Build37)
Map Location 10,993,764 - 11,128,067
singlet/doubletdoublet
Overlap gene1010001N08Rik, Gata6
Upstream geneThoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296
Downstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180D14.bB6Ng01-180D14.g
ACCGA006721GA006722
length4271,004
definitionB6Ng01-180D14.b B6Ng01-180D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,993,764 - 10,994,197)(11,127,070 - 11,128,067)
sequence
ctgcagataactgtatacaaggggagagactgggtttctttattctcctt
catttaccaatgtcattattcatcccttctttacttctttagattttttt
ctttttgggtgttgttgttttttatttttttattttttttattttttgtt
tttttttttttgtgctggtattaaaggcttgagccaccacgtccggctgt
ttttgttttttaaaggcaaagtttctttgtgtagctttggccttcctaga
acttgctctatagatcaagctggccttgaactcacagagatcctcttatc
tctgcctcccaagtgctgggattaaagatgtatgtcactactacactgct
acttcactccttctatatttaagtaatgtacttactttctctctctctct
ctctcctctccctctccctctccctct
gaattcatctaagtgggaaggagacacaatgaaggttcagcctggcacac
tgtaagcattaaacaaacgtttacttagtggattatcaaaccaataacta
cctggctgaatacgggatgtgagtatcacagacacatttttttaaggtgg
aattacagtagttgctttgggaagatttattcagtcaacatgcatcctac
caaagctggctttttgaagggtgcactattaattcacttccctaagactg
gaaactgagtagattgatctaaggttcagcactctgcatttgaatgttaa
atcacacccaaagacaggaggggaatcatcacagctcacggcatatcctt
ctggttgataaaaattgacacgttcaaaacccaggttcttagagaaacgg
caatgagatttctggtgagggattttctgtagtgagtattggagaagatg
ctcagaaaagccttctgccatctcactgctgtgaaaggagagctctgggc
atttctacacccacgacgacctttctgcctcctcccggggagccctggtt
tccagtgtcaggactctccttcatcaattcttcactgaagaatcaatgag
ggtgtggagagctgccttctttttctctgacctgcctcttctgctggtgc
caactccatttggaggagagtcacagggaactgtttgtgcagggagtggc
cctgccttccctttcagtccctgcagccaccccctcacctctgatcttca
ccacctaattcccagcagcctgctgtgttgctgcaacaagtgagaactct
ttcttaatgcagcacagaggtgtctgtaggcagccaatgatgggcaccac
tggccacagctggttagatgtggttttccagacttgttgtacccctttgt
gactaatacttacctactagttggctgggaatgagacctcttctcctact
catctggcactttggaacactattcagcccggcttcccaaaccactggcc
aaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10993764_10994197
seq2: B6Ng01-180D14.b_42_474

seq1  GAATTCCTGCAGATAACTGTATACAAGGGGAGAGACTGGGTATTCTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTCCTGCAGATAACTGTATACAAGGGGAGAGACTGGGT-TTCTTTAT  49

seq1  TCTCCTTCATTTACCAATGTCATTATTCATCCCTTCTTTACTTCTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATTTACCAATGTCATTATTCATCCCTTCTTTACTTCTTTAGA  99

seq1  TTTTTTTCTTTTTGGGTGTTGTTGTTTTTTATTTTTTTATTTTTTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTGGGTGTTGTTGTTTTTTATTTTTTTATTTTTTTTATT  149

seq1  TTTTGTTTTTTTTTTTTTGTGCTGGTATTAAAGGCTTGAGCCACCACGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTTTTTTTGTGCTGGTATTAAAGGCTTGAGCCACCACGTC  199

seq1  CGGCTGTTTTTGTTTTTTAAAGGCAAAGTTTCTTTGTGTAGCTTTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGTTTTTGTTTTTTAAAGGCAAAGTTTCTTTGTGTAGCTTTGGCCT  249

seq1  TCCTAGAACTTGCTCTATAGATCAAGCTGGCCTTGAACTCACAGAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAACTTGCTCTATAGATCAAGCTGGCCTTGAACTCACAGAGATCC  299

seq1  TCTTATCTCTGCCTCCCAAGTGCTGGGATTAAAGATGTATGTCACTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCTGCCTCCCAAGTGCTGGGATTAAAGATGTATGTCACTACTA  349

seq1  CACTGCTACTTCACTCCTTCTATATTTAAGTAATGTACTTACTTTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTACTTCACTCCTTCTATATTTAAGTAATGTACTTACTTTCTCTC  399

seq1  TCTCTCTCTCTCCTCTCCCTCTCCCTCTCCCTCT  434
      ||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCCTCTCCCTCTCCCTCTCCCTCT  433

seq1: chr18_11127070_11128067
seq2: B6Ng01-180D14.g_67_1070 (reverse)

seq1  GTTTGG-CAGT-GTTTGGGAAGCC-GGCTG-ATAGTGTTCC-AAGTGCCA  45
      |||||| |||| |||||||||||| ||||| |||||||||| ||||||||
seq2  GTTTGGCCAGTGGTTTGGGAAGCCGGGCTGAATAGTGTTCCAAAGTGCCA  50

seq1  GATGAGTAGGAG-AGAGGTCTCA-TCCCAGCCAACTAGTAGGTAAGTATT  93
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GATGAGTAGGAGAAGAGGTCTCATTCCCAGCCAACTAGTAGGTAAGTATT  100

seq1  AGTCACAAAGGGGTACAAACAAGTCTGGAAAACCACATCTAACCAGCTGT  143
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTCACAAAGGGGTAC-AACAAGTCTGGAAAACCACATCTAACCAGCTGT  149

seq1  GGCCAGTGGTGCCCATCATTGGCTGCCTACAGACACCTCTGTGCTGCATT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGGTGCCCATCATTGGCTGCCTACAGACACCTCTGTGCTGCATT  199

seq1  AAGAAAGAGTTCTCACTTGTTGCAGCAACACAGCAGGCTGCTGGGAATTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGTTCTCACTTGTTGCAGCAACACAGCAGGCTGCTGGGAATTA  249

seq1  GGTGGTGAAGATCAGAGGTGAGGGGGTGGCTGCAGGGACTGAAAGGGAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAAGATCAGAGGTGAGGGGGTGGCTGCAGGGACTGAAAGGGAAG  299

seq1  GCAGGGCCACTCCCTGCACAAACAGTTCCCTGTGACTCTCCTCCAAATGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCACTCCCTGCACAAACAGTTCCCTGTGACTCTCCTCCAAATGG  349

seq1  AGTTGGCACCAGCAGAAGAGGCAGGTCAGAGAAAAAGAAGGCAGCTCTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCACCAGCAGAAGAGGCAGGTCAGAGAAAAAGAAGGCAGCTCTCC  399

seq1  ACACCCTCATTGATTCTTCAGTGAAGAATTGATGAAGGAGAGTCCTGACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCATTGATTCTTCAGTGAAGAATTGATGAAGGAGAGTCCTGACA  449

seq1  CTGGAAACCAGGGCTCCCCGGGAGGAGGCAGAAAGGTCGTCGTGGGTGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCAGGGCTCCCCGGGAGGAGGCAGAAAGGTCGTCGTGGGTGTA  499

seq1  GAAATGCCCAGAGCTCTCCTTTCACAGCAGTGAGATGGCAGAAGGCTTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCAGAGCTCTCCTTTCACAGCAGTGAGATGGCAGAAGGCTTTT  549

seq1  CTGAGCATCTTCTCCAATACTCACTACAGAAAATCCCTCACCAGAAATCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCTTCTCCAATACTCACTACAGAAAATCCCTCACCAGAAATCT  599

seq1  CATTGCCGTTTCTCTAAGAACCTGGGTTTTGAACGTGTCAATTTTTATCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCGTTTCTCTAAGAACCTGGGTTTTGAACGTGTCAATTTTTATCA  649

seq1  ACCAGAAGGATATGCCGTGAGCTGTGATGATTCCCCTCCTGTCTTTGGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGGATATGCCGTGAGCTGTGATGATTCCCCTCCTGTCTTTGGGT  699

seq1  GTGATTTAACATTCAAATGCAGAGTGCTGAACCTTAGATCAATCTACTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTAACATTCAAATGCAGAGTGCTGAACCTTAGATCAATCTACTCA  749

seq1  GTTTCCAGTCTTAGGGAAGTGAATTAATAGTGCACCCTTCAAAAAGCCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGTCTTAGGGAAGTGAATTAATAGTGCACCCTTCAAAAAGCCAG  799

seq1  CTTTGGTAGGATGCATGTTGACTGAATAAATCTTCCCAAAGCAACTACTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAGGATGCATGTTGACTGAATAAATCTTCCCAAAGCAACTACTG  849

seq1  TAATTCCACCTTAAAAAAATGTGTCTGTGATACTCACATCCCGTATTCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACCTTAAAAAAATGTGTCTGTGATACTCACATCCCGTATTCAG  899

seq1  CCAGGTAGTTATTGGTTTGATAATCCACTAAGTAAACGTTTGTTTAATGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGTTATTGGTTTGATAATCCACTAAGTAAACGTTTGTTTAATGC  949

seq1  TTACAGTGTGCCAGGCTGAACCTTCATTGTGTCTCCTTCCCACTTAGATG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTGCCAGGCTGAACCTTCATTGTGTCTCCTTCCCACTTAGATG  999

seq1  AATTC  998
      |||||
seq2  AATTC  1004