BAC Information

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BAC

Clone NameB6Ng01-181A02
Chromosome18 (Build37)
Map Location 90,489,131 - 90,490,237
singlet/doubletsinglet
Overlap genenone
Upstream geneDok6, LOC383320, LOC620693, Eif3s6-ps2
Downstream geneLOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181A02.bB6Ng01-181A02.g
ACCGA007286GA007287
length1,1361,199
definitionB6Ng01-181A02.b B6Ng01-181A02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaccgaggaataccaaagggctgagaagcacttgaaaaaatg
ttcaacatccttaatcatcaaggaaatgcaaatcaaaacagccctgagat
tccacatcacaccagtcaaaatggctaggatcaaaaattcaagtgacagc
agatgcttttcgaggatgtggagaaagaggaacactcctccattgctggt
gggattgcaagcttgcacaaccactctggaaatcaatctggcggttcctc
agaaaactggacatagtattaccggtacatacagcaatacctctcctggg
catatacccagaagatgttccaactggtaataaggacacatgctccactg
tgctcatagcagccctatttataatagccagaagctggaaagaagccaga
tgtccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtattactcagctattaaaaagaatgattttatgaaattcctagcca
aatggatggacctggagggcattcagatgtcagagtgactggagtgacaa
caacataacacacagctcagtcacaggaccacacgctgcctgcttggctc
aacctgatctctcagatctctatgctaccacaaagtgacagcacagaaca
ctagaaaaacatgcttaactgatattcttagctattcccccccccccaaa
tcaaatcctattctagcattattaatgcaaggactatttcccagtgttgg
actaacatgccattagagggcatctatagttataaattatgctacaaatg
ttttcatacaaaaaattaggtgccaaaagaaagcacacacatacacatct
catattatacatacatacatacatacatacatacatacatacatacatat
atatgtttctgacccatgaaaactacaacatgctctgcatgatcctggag
aagatttgggcattcctctttatcaattaaaagaacactacatctggaaa
catccagattcaacatttttttttcttttctttttttttttttaataaga
ataatttttcttctagctgggctgccttgtctgcctcagtgggagaagag
tgacttaattctcacaagagttcctgaagtgtcatg
gaattctcacctgaggagtaccgaatggctgagaagcacctggaaaaatg
ttcaacatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcacaccagtcagaatggctaatatcaaaacttcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccattgtgggtg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacgtagtactaccagaggatcccacaatacctctcctgggca
tatatccagaagatgttccaaccggtaagaaggatgtttatagctacgtt
tatagcagccttatttataatagccagaatctggaaagtacccagttgcc
cctcaacagaggaatggatacagaaaatgtggtacatctacacaatggag
tactactcaactattaaaaagagtgaatttgtgaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgaggtaacccaatcacaaaaga
actcacacagtatgtactcagtgataagtggatattagcccaaaaactta
ggattcccaagatataagatacaatttgctaaacgtgtgaaactcaagaa
gaatgaagatcaaagtgtggacactttgccccttcttagaattgggaaca
aaacacccatggaaagagttacagagacaaagtttggtgctctgacaaaa
ggatggaccatctagagactgccatacccggggatccatcccataatcag
cttccaaacgctgacaccattgcatacactagcaagcttttgctgaaaga
acccagatagagctgtctcttgtgagactatgccggggcctagcaaaaca
cagaagtggatgctcatagtcagcttattggatggatcacatgggccccc
aatggaggagctagagaaaagtacccaggagctaaagggatctgcaaccc
tataggtggaacacattatgaactacaagtaccccgagttctgactctag
ctgcatattgtatcaaaggatgcttagtcagccattcacctggaagaaga
ggccatgaacttgctactttatatgtcccagtacaggaatgccagcctac
atatgggggatggtaggtggatacaggacgcatcgctgaagctacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_90489131_90490237
seq2: B6Ng01-181A02.b_70_1182

seq1  AAGGGCTGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAAGG  50

seq1  AAATGCAAATCAAAACAGCCCTGAGATTCCACATCACACCAGTCAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATCAAAACAGCCCTGAGATTCCACATCACACCAGTCAAAATG  100

seq1  GCTAGGATCAAAAATTCAAGTGACAGCAGATGCTTTTCGAGGATGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGATCAAAAATTCAAGTGACAGCAGATGCTTTTCGAGGATGTGGAG  150

seq1  AAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGCACAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGCACAACCA  200

seq1  CTCTGGAAATCAATCTGGCGGTTCCTCAGAAAACTGGACATAGTATTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAATCAATCTGGCGGTTCCTCAGAAAACTGGACATAGTATTACC  250

seq1  GGTACATACAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATACAGCAATACCTCTCCTGGGCATATACCCAGAAGATGTTCCAA  300

seq1  CTGGTAATAAGGACACATGCTCCACTGTGCTCATAGCAGCCCTATTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATAAGGACACATGCTCCACTGTGCTCATAGCAGCCCTATTTATA  350

seq1  ATAGCCAGAAGCTGGAAAGAAGCCAGATGTCCCTCAACAGAGGAATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGAAGCTGGAAAGAAGCCAGATGTCCCTCAACAGAGGAATGGAT  400

seq1  ACAGAAAATGTGGTACATTTACACAATGGAGTATTACTCAGCTATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGTGGTACATTTACACAATGGAGTATTACTCAGCTATTAAAA  450

seq1  AGAATGATTTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATTTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATT  500

seq1  CAGATGTCAGAGTGACTGGAGTGACAACAACATAACACACAGCTCAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCAGAGTGACTGGAGTGACAACAACATAACACACAGCTCAGTCA  550

seq1  CAGGACCACACGCTGCCTGCTTGGCTCAACCTGATCTCTCAGATCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCACACGCTGCCTGCTTGGCTCAACCTGATCTCTCAGATCTCTAT  600

seq1  GCTACCACAAAGTGACAGCACAGAACACTAGAAAAACATGCTTAACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCACAAAGTGACAGCACAGAACACTAGAAAAACATGCTTAACTGAT  650

seq1  ATTCTTAGCTATTCCCCCCCCCCCAAATCAAATCCTATTCTAGCATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGCTATTCCCCCCCCCCCAAATCAAATCCTATTCTAGCATTATT  700

seq1  AATGCAAGGACTATTTCCCAGTGTTGGACTAACATGCCATTAGAGGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGGACTATTTCCCAGTGTTGGACTAACATGCCATTAGAGGGCAT  750

seq1  CTATAGTTATAAATTATGCTACAAATGTTTTCATACAAAAAATTAGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTATAAATTATGCTACAAATGTTTTCATACAAAAAATTAGGTGC  800

seq1  CAAAAGAAAGCACACACATACACATCTCATATTATACATACATACATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAGCACACACATACACATCTCATATTATACATACATACATACA  850

seq1  TACATACATACATACATACATACATATATATGTTTCTGACCCATGAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACATACATACATACATATATATGTTTCTGACCCATGAAAAC  900

seq1  TACAACATGCTCTGCATGATCCTGGAGAAGATTTGGGCATTCCTCTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATGCTCTGCATGATCCTGGAGAAGATTTGGGCATTCCTCTTTAT  950

seq1  CAATTAAAAGAACACTACATCTGGAAACATCCAGATTC-ACATTTTTTTT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAATTAAAAGAACACTACATCTGGAAACATCCAGATTCAACATTTTTTTT  1000

seq1  CTTTTTCCTTTTTTTTTTTTTATTAG-ATA--TTTTCTTCTAGCTGGGCT  1046
        ||||| |||||||||||| || || |||  ||||||||||||||||||
seq2  TCTTTTCTTTTTTTTTTTTTAATAAGAATAATTTTTCTTCTAGCTGGGCT  1050

seq1  GCCTTGTCTGGCCTCAGTGGGAGAGGAAGTGACT--AATCTCAC-AGAG-  1092
      ||||||||| |||||||||||||| | |||||||  | |||||| |||| 
seq2  GCCTTGTCT-GCCTCAGTGGGAGAAG-AGTGACTTAATTCTCACAAGAGT  1098

seq1  TCCTGAAGTGTCATG  1107
      |||||||||||||||
seq2  TCCTGAAGTGTCATG  1113