BAC Information

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BAC

Clone NameB6Ng01-182F13
Chromosome18 (Build37)
Map Location 88,695,180 - 88,843,388
singlet/doubletdoublet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182F13.bB6Ng01-182F13.g
ACCGA008263GA008264
length1,0701,176
definitionB6Ng01-182F13.b B6Ng01-182F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,695,180 - 88,696,253)(88,842,205 - 88,843,388)
sequence
gaattctaggcaaaaaaaaaaaaaaaaaaacctgtctttcacatgaaaat
gaaacaaattatgaaacaccatagtaaaatttaattttttcatggcttgc
aaccacctgctgattaaaaaccattaagtcaactgagtaaatgcatcaaa
caagtatattaaagttgataatttttctttaattttaaggaacttacatc
tggtttgctagtcaaatgagtgttggattgaaactgcaaagataatgtta
gacatggccaaatttagttaaactgaaaaaccagtatatttgcatatact
tccaaggggccatctgtcatttaattcaagcacagatcatacagctttat
aaacactatgacaaaatgaaaacactaaccaaaacgtcaacaagcttgaa
aaattagtataatcaatgctcacattacggtttatttctgttcaatccac
aatcttatatacacacatctattaatttattcaatgaagatttattcaat
taattatgttagagacacactgctgagtattaagaaaacaacattaaaca
ggaagcacatgttctatatcctcctggagactaaattcacaaacctgctg
gtgatcaaagagttttcacagcagtagaactaatttgctgaattcaccaa
tttactgagtctccaaagtatacataaatttatttcacattcagcaaatt
gaatgccttattaaggatattaaagctttgttctacagtttggtatcaat
cctattaaaactacttaaagatgaacattttgctgtcattccattttgct
gattggttgtgttttgtcattgtcaacctagtcatccagtgaccttgttt
tgggacactgagcatcaatcattgcctttacctaaagctgtttctacctg
cccttactgatgtcaacacctaggactaacatggcacagcattctcagaa
aaatctcacctcaaagctgtatgcaactgtgcaggaagactgggaatact
ctgtagatgatactgagtttaacttatttcattcatgttgtacatgtgta
ctttaatctttgactcaaat
gaattctgtacttttcccaccaactatttagtagagggcaaaggggctac
taagacagaaaccagtcatttgaaagtgtttacgtccacataacagtcaa
gtaaaataaattcatcctctctctttctccctctctctctctccctctct
ctctctcctcatctcaagagagtatcttagaattttcttttcttgctaaa
gaaaatttaaaaaaaatcacaacccagcattaccttgtagagcagaattg
gtagtcgtgtgttaatcccgtccagagtgcttaggtctagaagcaaattt
ttagtgaaaaaagaattttttttttgttctcattgccattacattatttg
aaatcaaagggtaagttagacttaatcttgcttttactttgtgtggtctc
agggctatttgcttgctggagtctgacaggcatctagaaaagcagctgtg
aaagaaccagctttgtactctccatattcattaccctaccttaaaaaatg
aatgtgacaagacacccttaaacaacaaggccattataggaactcctctg
aggagctttaataattcaaacgtgagtcgagcagtttttgtaagacaaaa
ccactctggtgtactttagaaacacatatagaggcaggataaaaatttac
ctttatatttatatgttaaaccaagaaaacaaaatcaaattcaatctaag
ctggaaggtaatgggtattatctcggtttacaaaggcaaagaacaataaa
aacatcctctttcctaggcactttacagataatgcaaataagtctccaaa
gagaagcatgaaatatttattgatgagtacacagcacactcccgaattac
acagggccatgacagtgattaaatgtgtggtggcccgtgaagagagatgc
tgaggttttaatgtacaaggtattgattaactgatgaatcttcaacagtt
tgtttccctgcagttacttgcaacatagggagaagatgaaaataatgtga
attatttgaagactaccatttcatgtaaatggagctagtgagctaaatgg
aagagtgattttcttgtccattcataggtgtggagtatgctatatgactg
aatcatttggaattggagaaatataggtcagatggtgatatttaagtgcc
aatgaatgacatttttccagtcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88695180_88696253
seq2: B6Ng01-182F13.b_43_1112

seq1  GAATTCTAGGCAAAAAAAAAAAAAAAAAAACCTGTCTTTCACATGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCAAAAAAAAAAAAAAAAAAACCTGTCTTTCACATGAAAAT  50

seq1  GAAACAAATTATGAAACACCATAGTAAAATTTAATTTTTTCATGGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTATGAAACACCATAGTAAAATTTAATTTTTTCATGGCTTGC  100

seq1  AACCACCTGCTGATTAAAAACCATTAAGTCAACTGAGTAAATGCATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGCTGATTAAAAACCATTAAGTCAACTGAGTAAATGCATCAAA  150

seq1  CAAGTATATTAAAGTTGATAATTTTTCTTTAATTTTAAGGAACTTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATATTAAAGTTGATAATTTTTCTTTAATTTTAAGGAACTTACATC  200

seq1  TGGTTTGCTAGTCAAATGAGTGTTGGATTGAAACTGCAAAGATAATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCTAGTCAAATGAGTGTTGGATTGAAACTGCAAAGATAATGTTA  250

seq1  GACATGGCCAAATTTAGTTAAACTGAAAAACCAGTATATTTGCATATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCCAAATTTAGTTAAACTGAAAAACCAGTATATTTGCATATACT  300

seq1  TCCAAGGGGCCATCTGTCATTTAATTCAAGCACAGATCATACAGCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGGCCATCTGTCATTTAATTCAAGCACAGATCATACAGCTTTAT  350

seq1  AAACACTATGACAAAATGAAAACACTAACCAAAACGTCAACAAGCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTATGACAAAATGAAAACACTAACCAAAACGTCAACAAGCTTGAA  400

seq1  AAATTAGTATAATCAATGCTCACATTACGGTTTATTTCTGTTCAATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTATAATCAATGCTCACATTACGGTTTATTTCTGTTCAATCCAC  450

seq1  AATCTTATATACACACATCTATTAATTTATTCAATGAAGATTTATTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATATACACACATCTATTAATTTATTCAATGAAGATTTATTCAAT  500

seq1  TAATTATGTTAGAGACACACTGCTGAGTATTAAGAAAACAACATTAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGTTAGAGACACACTGCTGAGTATTAAGAAAACAACATTAAACA  550

seq1  GGAAGCACATGTTCTATATCCTCCTGGAGACTAAATTCACAAACCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACATGTTCTATATCCTCCTGGAGACTAAATTCACAAACCTGCTG  600

seq1  GTGATCAAAGAGTTTTCACAGCAGTAGAACTAATTTGCTGAATTCACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAAAGAGTTTTCACAGCAGTAGAACTAATTTGCTGAATTCACCAA  650

seq1  TTTACTGAGTCTCCAAAGTATACATAAATTTATTTCACATTCAGCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAGTCTCCAAAGTATACATAAATTTATTTCACATTCAGCAAATT  700

seq1  GAATGCCTTATTAAGGATATTAAAGCTTTGTTCTACAGTTTGGTATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTTATTAAGGATATTAAAGCTTTGTTCTACAGTTTGGTATCAAT  750

seq1  CCTATTAAAACTACTTAAAGATGAACATTTTGCTGTCATTCCATTTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAAACTACTTAAAGATGAACATTTTGCTGTCATTCCATTTTGCT  800

seq1  GATTGGTTGTGTTTTGTCATTGTCAACCTAGTCATCCAGTGACCTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTGTGTTTTGTCATTGTCAACCTAGTCATCCAGTGACCTTGTTT  850

seq1  TGGGACACTGAGCATCAATCATTGCCTTTACCTAAAGCTGTTTCTACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACACTGAGCATCAATCATTGCCTTTACCTAAAGCTGTTTCTACCTG  900

seq1  CCCTTACTGATGTTCAACACCTAGGACTAACATGGCACAGCA-TCTCAG-  948
      |||||||||||| ||||||||||||||||||||||||||||| |||||| 
seq2  CCCTTACTGATG-TCAACACCTAGGACTAACATGGCACAGCATTCTCAGA  949

seq1  AAAATCTCACCTCAAAGCTGTATGCAACTGTTGCAAGAAGACCTGGGAAT  998
      |||||||||||||||||||||||||||||| |||| ||||| ||||||||
seq2  AAAATCTCACCTCAAAGCTGTATGCAACTG-TGCAGGAAGA-CTGGGAAT  997

seq1  ACTCTGTAGATGATACTGAGTTTAACTTTATTTTCATTTCATG-TGTACA  1047
      ||||||||||||||||||||||||||||   ||||| |||||| ||||||
seq2  ACTCTGTAGATGATACTGAGTTTAACTT--ATTTCA-TTCATGTTGTACA  1044

seq1  TGTGTACTTTAATCTTTTGACTCAAAT  1074
      |||||||||||||| ||||||||||||
seq2  TGTGTACTTTAATC-TTTGACTCAAAT  1070

seq1: chr18_88842205_88843388
seq2: B6Ng01-182F13.g_64_1239 (reverse)

seq1  AGTTGACCTGGAAAAAAAATCTTCATTTTTCATTGGCACTTTAAATAATC  50
      |||||| |||||||||      |||   ||||||||||| |||||| |||
seq2  AGTTGA-CTGGAAAAA----TGTCA---TTCATTGGCAC-TTAAAT-ATC  40

seq1  ACATTCTGACCTTATATTT-TCTCATTTCAAATGGATCAGGTCATTATAC  99
      ||  ||||||| ||||||| ||  ||| ||||||  ||| |||| |||| 
seq2  ACCATCTGACC-TATATTTCTCCAATTCCAAATGATTCA-GTCA-TATAG  87

seq1  AATACT-CACACCTATGAATGGGACAAGAAAAATCACTCTT-CATTTAGC  147
       ||||| ||||||||||||| ||||||| |||||||||||| ||||||||
seq2  CATACTCCACACCTATGAAT-GGACAAG-AAAATCACTCTTCCATTTAGC  135

seq1  TCACTAGCTCCATTTTTACATGAAAT-GTAGTCTTCAAAT-ATTCACATT  195
      ||||||||||||  |||||||||||| ||||||||||||| |||||||||
seq2  TCACTAGCTCCA--TTTACATGAAATGGTAGTCTTCAAATAATTCACATT  183

seq1  ATTTTCATC-TCTCCCTATGTTGCAAGTAACTGCA-GGAAACAAACTGTT  243
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTTCATCTTCTCCCTATGTTGCAAGTAACTGCAGGGAAACAAACTGTT  233

seq1  G-AGATTCATCAGTTAATCAATACCTTGTACATTAAAACCTCAGCATCTC  292
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCATCAGTTAATCAATACCTTGTACATTAAAACCTCAGCATCTC  283

seq1  TCTTCAC-GGCCACCACACATTTAATCACTGTCATGGCCCTGTGTAATTC  341
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACGGGCCACCACACATTTAATCACTGTCATGGCCCTGTGTAATTC  333

seq1  GGGAGTGTGCTGTGTACTCATCAATAAATATTTCATGCTTCTCTTTGGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTGCTGTGTACTCATCAATAAATATTTCATGCTTCTCTTTGGAG  383

seq1  ACTTATTTGCATTATCTGTAAAGTGCCTAGGAAAGAGGATGTTTTTATTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTGCATTATCTGTAAAGTGCCTAGGAAAGAGGATGTTTTTATTG  433

seq1  TTCTTTGCCTTTGTAAACCGAGATAATACCCATTACCTTCCAGCTTAGAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCCTTTGTAAACCGAGATAATACCCATTACCTTCCAGCTTAGAT  483

seq1  TGAATTTGATTTTGTTTTCTTGGTTTAACATATAAATATAAAGGTAAATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGATTTTGTTTTCTTGGTTTAACATATAAATATAAAGGTAAATT  533

seq1  TTTATCCTGCCTCTATATGTGTTTCTAAAGTACACCAGAGTGGTTTTGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGCCTCTATATGTGTTTCTAAAGTACACCAGAGTGGTTTTGTC  583

seq1  TTACAAAAACTGCTCGACTCACGTTTGAATTATTAAAGCTCCTCAGAGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAACTGCTCGACTCACGTTTGAATTATTAAAGCTCCTCAGAGGA  633

seq1  GTTCCTATAATGGCCTTGTTGTTTAAGGGTGTCTTGTCACATTCATTTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATAATGGCCTTGTTGTTTAAGGGTGTCTTGTCACATTCATTTTT  683

seq1  TAAGGTAGGGTAATGAATATGGAGAGTACAAAGCTGGTTCTTTCACAGCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGGGTAATGAATATGGAGAGTACAAAGCTGGTTCTTTCACAGCT  733

seq1  GCTTTTCTAGATGCCTGTCAGACTCCAGCAAGCAAATAGCCCTGAGACCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTAGATGCCTGTCAGACTCCAGCAAGCAAATAGCCCTGAGACCA  783

seq1  CACAAAGTAAAAGCAAGATTAAGTCTAACTTACCCTTTGATTTCAAATAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTAAAAGCAAGATTAAGTCTAACTTACCCTTTGATTTCAAATAA  833

seq1  TGTAATGGCAATGAGAACAAAAAAAAAATTCTTTTTTCACTAAAAATTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGCAATGAGAACAAAAAAAAAATTCTTTTTTCACTAAAAATTTG  883

seq1  CTTCTAGACCTAAGCACTCTGGACGGGATTAACACACGACTACCAATTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGACCTAAGCACTCTGGACGGGATTAACACACGACTACCAATTCT  933

seq1  GCTCTACAAGGTAATGCTGGGTTGTGATTTTTTTTAAATTTTCTTTAGCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACAAGGTAATGCTGGGTTGTGATTTTTTTTAAATTTTCTTTAGCA  983

seq1  AGAAAAGAAAATTCTAAGATACTCTCTTGAGATGAGGAGAGAGAGAGAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAATTCTAAGATACTCTCTTGAGATGAGGAGAGAGAGAGAGG  1033

seq1  GAGAGAGAGAGAGGGAGAAAGAGAGAGGATGAATTTATTTTACTTGACTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGGGAGAAAGAGAGAGGATGAATTTATTTTACTTGACTG  1083

seq1  TTATGTGGACGTAAACACTTTCAAATGACTGGTTTCTGTCTTAGTAGCCC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGACGTAAACACTTTCAAATGACTGGTTTCTGTCTTAGTAGCCC  1133

seq1  CTTTGCCCTCTACTAAATAGTTGGTGGGAAAAGTACAGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCTCTACTAAATAGTTGGTGGGAAAAGTACAGAATTC  1176