BAC Information

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BAC

Clone NameB6Ng01-182K11
Chromosome18 (Build37)
Map Location 90,615,615 - 90,713,280
singlet/doubletdoublet
Overlap geneLOC665526, Txndc10, LOC666779
Upstream geneDok6, LOC383320, LOC620693, Eif3s6-ps2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182K11.bB6Ng01-182K11.g
ACCGA008487GA008488
length1,1511,186
definitionB6Ng01-182K11.b B6Ng01-182K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,615,615 - 90,616,761)(90,712,116 - 90,713,280)
sequence
gaattcaggatcagaaagccctttctcttaaatatcagtggattttttta
caatttatctatcaataacaattaatagtaccaaaagcaacattttaggt
aatgtattaatatgatttcatattataactattgctatataggatatatg
tcaatttacatatcaactatttgtccaagtgaattctaaatacttagatg
gttagataacccacttgaacttattttccaaaactataaaaatatgcatc
gttgtgccagtgagcactcacaggagttttaagggaggaaacaacttgca
ctgcctgaaccatataacttatccctgcctgatctttctttattttcctt
ctctgacttaatacctcttatcccagttagtgaactcttgagcattcagg
gaacaaaagtgtcagtgaagtgagggggaaaactgccatccaaatgcacg
tagatattgtacataagtgaaaaataattgcctaccaggcactctttact
gaattttgttattgcctgttggagcaattcatgtagaaatgaatgccaac
attgctgagcatccatcaactgttgatagccattgattagcttggtagac
atgaattttctggtgctttaacttacttggaaagtagctgttactctagg
cacaggaaagtaattggaatgcttcaaggaaggagattatatgaactaat
ttaaagttttagaaacatcaccctggttggtaggcaggaaatgagttaag
tagattaactgcggtacttaaagggactggagagtaaaccaaagtaaaaa
attataatggttgtgctggagaaacagcaaaacttgaaaagagtgatagg
agatggagtttagagagatgattgaaaggctgctgtactgactagttttg
agtcaacttgacacagatggagttgtcacagagaaaggagcttcagttga
ggaaatgcctccatgagatccaactgtaaggcatttctcaattagtgatc
aagggggaaaggcccttgtgggttggaaccatccactgggctggtaatct
tggttctataagaaggagcaagctgagcagccaggggaagcaagcccagg
taaagaacatccctccatgacctctgcatcagctcttgcttccctgacct
g

gaattctaaatgaagtgagaaatcagttaagtttaaactgtaaatgtcag
ttagagctgtgggtgtgtgccagtcatgaattcatctaaccttcataatc
tagagataggtggtattatcctcaagctataggtaattcagaagtgggag
aggttagttgtataaaagatgttgccaaaataattaaaaagcaaatgcaa
acagtgccttccacctggaccccaaaggctttaaattccctgttcattaa
taatgaaagtgagaggttagaagagtatggtgtccaggatcataatttat
taatacaaaactcaaatccaccacactttaaattttgtagaaaagctgag
gtatccttttaaaaataatatttaaaaaacatattaggtcttataaaatt
aaaattaaccaagtgatgttggggttctgggtataaggaattaatctaca
attcacttccaagcctgcttaaaatctaaaattgtgtttctgtaattata
aataaactatgtcttaataaaaggaaagtactgtgtggaatattattagt
tgtagcttctgattttgtttagagattagtcatgtggcaaatttctgaaa
aacacatattaaaggtagcaattatgcaatgatgtttttaattactttat
tttagaaaaacaaaggtttccaactggtgtcataaagcagagtatcacaa
ttaaacaagttagtagtaataaagtctttcaaaaacttttatagcttagc
ccaaactagaacattatttattattattattctcattcttggggacttag
actcattcagaaaaaatatatatttgtaaaaataaaattgcaaactcagt
cctgttatttaagtcttaatatctcacacttgttttaacaatttctacat
aagaatagctgagtgatccccccccccgttcatttcctcatgaaacactg
gataaaaaaatgtataatattttttttgtaaatatttggtctgtagccct
tgggctgacctcggaactcacaggagattcaccttgtctctggtgtcccc
aatgcttggaaatggattcttttctaaattaggaggctacctaacaaggc
caaaacattaggaaaccttcatgggccaataaaaacctgaaataacggaa
caacattaatggaatgcgctcaggctcttcaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_90615615_90616761
seq2: B6Ng01-182K11.b_44_1194

seq1  GAATTCAGGATCAGAAAGCCCTTTCTCTTAAATATCAGTGGATTTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATCAGAAAGCCCTTTCTCTTAAATATCAGTGGATTTTTTTA  50

seq1  CAATTTATCTATCAATAACAATTAATAGTACCAAAAGCAACATTTTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATCTATCAATAACAATTAATAGTACCAAAAGCAACATTTTAGGT  100

seq1  AATGTATTAATATGATTTCATATTATAACTATTGCTATATAGGATATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTAATATGATTTCATATTATAACTATTGCTATATAGGATATATG  150

seq1  TCAATTTACATATCAACTATTTGTCCAAGTGAATTCTAAATACTTAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTACATATCAACTATTTGTCCAAGTGAATTCTAAATACTTAGATG  200

seq1  GTTAGATAACCCACTTGAACTTATTTTCCAAAACTATAAAAATATGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATAACCCACTTGAACTTATTTTCCAAAACTATAAAAATATGCATC  250

seq1  GTTGTGCCAGTGAGCACTCACAGGAGTTTTAAGGGAGGAAACAACTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCCAGTGAGCACTCACAGGAGTTTTAAGGGAGGAAACAACTTGCA  300

seq1  CTGCCTGAACCATATAACTTATCCCTGCCTGATCTTTCTTTATTTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGAACCATATAACTTATCCCTGCCTGATCTTTCTTTATTTTCCTT  350

seq1  CTCTGACTTAATACCTCTTATCCCAGTTAGTGAACTCTTGAGCATTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTTAATACCTCTTATCCCAGTTAGTGAACTCTTGAGCATTCAGG  400

seq1  GAACAAAAGTGTCAGTGAAGTGAGGGGGAAAACTGCCATCCAAATGCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAGTGTCAGTGAAGTGAGGGGGAAAACTGCCATCCAAATGCACG  450

seq1  TAGATATTGTACATAAGTGAAAAATAATTGCCTACCAGGCACTCTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTGTACATAAGTGAAAAATAATTGCCTACCAGGCACTCTTTACT  500

seq1  GAATTTTGTTATTGCCTGTTGGAGCAATTCATGTAGAAATGAATGCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTTATTGCCTGTTGGAGCAATTCATGTAGAAATGAATGCCAAC  550

seq1  ATTGCTGAGCATCCATCAACTGTTGATAGCCATTGATTAGCTTGGTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGAGCATCCATCAACTGTTGATAGCCATTGATTAGCTTGGTAGAC  600

seq1  ATGAATTTTCTGGTGCTTTAACTTACTTGGAAAGTAGCTGTTACTCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTTCTGGTGCTTTAACTTACTTGGAAAGTAGCTGTTACTCTAGG  650

seq1  CACAGGAAAGTAATTGGAATGCTTCAAGGAAGGAGATTATATGAACTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAAGTAATTGGAATGCTTCAAGGAAGGAGATTATATGAACTAAT  700

seq1  TTAAAGTTTTAGAAACATCACCCTGGTTGGTAGGCAGGAAATGAGTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTTAGAAACATCACCCTGGTTGGTAGGCAGGAAATGAGTTAAG  750

seq1  TAGATTAACTGCGGTACTTAAAGGGACTGGAGAGTAAACCAAAGTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAACTGCGGTACTTAAAGGGACTGGAGAGTAAACCAAAGTAAAAA  800

seq1  ATTATAATGGTTGTGCTGGAGAAACAGCAAAACTTGAAAAGAGTGATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGGTTGTGCTGGAGAAACAGCAAAACTTGAAAAGAGTGATAGG  850

seq1  AGATGGAGTTTAGAGAGATGATTGAAAGGCTGCTGTACTGACTAGTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGTTTAGAGAGATGATTGAAAGGCTGCTGTACTGACTAGTTTTG  900

seq1  AGTCAACTTGACACAGATGGAGTTGTCACAGAGAAAGGAGCTTCAGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTTGACACAGATGGAGTTGTCACAGAGAAAGGAGCTTCAGTTGA  950

seq1  GGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGAT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAAATGCCTCCATGAGATCCAACTGTAAGGCA-TTTCTCAATTAGTGAT  999

seq1  CAAGGGGGAAAGGCCCCTTGTGGG-TGGGACCAT-CACTGGGCTGGTAAT  1048
      ||||||||||||| |||||||||| ||| ||||| |||||||||||||||
seq2  CAAGGGGGAAAGG-CCCTTGTGGGTTGGAACCATCCACTGGGCTGGTAAT  1048

seq1  CTTGGTTCTATAAGA--GAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCC-  1095
      |||||||||||||||  ||||| ||||||| |||||||||||||||||| 
seq2  CTTGGTTCTATAAGAAGGAGCAAGCTGAGC-AGCCAGGGGAAGCAAGCCC  1097

seq1  -AGTAAAGAACATCCCTCCATGACCTCTGCATCAGCTCCTGC-TCCCTGA  1143
        |||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  AGGTAAAGAACATCCCTCCATGACCTCTGCATCAGCTCTTGCTTCCCTGA  1147

seq1  CCTG  1147
      ||||
seq2  CCTG  1151


seq1: chr18_90712116_90713280
seq2: B6Ng01-182K11.g_66_1251 (reverse)

seq1  TCTCTTGAAGAGCTGAAGCG-AT--CATTTATGTTGTTTCTGTTTATTCA  47
      |||| ||||||||   |||| ||  |||| |||||| ||| |||  ||||
seq2  TCTCCTGAAGAGCCTGAGCGCATTCCATTAATGTTG-TTCCGTTATTTCA  49

seq1  G--TTTTATT-GCCCATGATG--TTTCTAATGTTTTGG-CTTGGTAGGTA  91
      |  ||||||| |||||||| |  || |||||||||||| |||| ||||||
seq2  GGTTTTTATTGGCCCATGAAGGTTTCCTAATGTTTTGGCCTTGTTAGGTA  99

seq1  G-CTCTAAATTTTAAGAAAAGAAT-CATTTCC-AGCATTGGGGACA-CAG  137
      | |||  |||||  |||||||||| ||||||| ||||||||||||| |||
seq2  GCCTCCTAATTT--AGAAAAGAATCCATTTCCAAGCATTGGGGACACCAG  147

seq1  AGACAA-GTGAATCT-CTGTGAGTT-CGAGGTCAGCC--AGGGCTACAGA  182
      |||||| |||||||| ||||||||| |||||||||||  |||||||||||
seq2  AGACAAGGTGAATCTCCTGTGAGTTCCGAGGTCAGCCCAAGGGCTACAGA  197

seq1  -CAAATATATAC-AAAAAAATA-TATACA-TTTTTTAT-CAGTGTTTCAT  227
       ||||||| ||| ||||||||| |||||| |||||||| |||||||||||
seq2  CCAAATATTTACAAAAAAAATATTATACATTTTTTTATCCAGTGTTTCAT  247

seq1  GAGGAAATGAACGGGGGGGGGGATCACTCAGCTATTCTTATGTAGAAATT  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGAACGGGGGGGGGGATCACTCAGCTATTCTTATGTAGAAATT  297

seq1  GTTAAAACAAGTGTGAGATATTAAGACTTAAATAACAGGACTGAGTTTGC  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACAAGTGTGAGATATTAAGACTTAAATAACAGGACTGAGTTTGC  347

seq1  AATTTTATTTTTACAAATATATATTTTTTCTGAATGAGTCTAAGT-CCCA  376
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTTTATTTTTACAAATATATATTTTTTCTGAATGAGTCTAAGTCCCCA  397

seq1  AGAATGAGAATAATAATAATAAATAATGTTCTAGTTTGGGCTAAGCTATA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAATAATAATAATAAATAATGTTCTAGTTTGGGCTAAGCTATA  447

seq1  AAAGTTTTTGAAAGACTTTATTACTACTAACTTGTTTAATTGTGATACTC  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTGAAAGACTTTATTACTACTAACTTGTTTAATTGTGATACTC  497

seq1  TGCTTTATGACACCAGTTGGAAACCTTTGTTTTTCTAAAATAAAGTAATT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATGACACCAGTTGGAAACCTTTGTTTTTCTAAAATAAAGTAATT  547

seq1  AAAAACATCATTGCATAATTGCTACCTTTAATATGTGTTTTTCAGAAATT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCATTGCATAATTGCTACCTTTAATATGTGTTTTTCAGAAATT  597

seq1  TGCCACATGACTAATCTCTAAACAAAATCAGAAGCTACAACTAATAATAT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATGACTAATCTCTAAACAAAATCAGAAGCTACAACTAATAATAT  647

seq1  TCCACACAGTACTTTCCTTTTATTAAGACATAGTTTATTTATAATTACAG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAGTACTTTCCTTTTATTAAGACATAGTTTATTTATAATTACAG  697

seq1  AAACACAATTTTAGATTTTAAGCAGGCTTGGAAGTGAATTGTAGATTAAT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATTTTAGATTTTAAGCAGGCTTGGAAGTGAATTGTAGATTAAT  747

seq1  TCCTTATACCCAGAACCCCAACATCACTTGGTTAATTTTAATTTTATAAG  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATACCCAGAACCCCAACATCACTTGGTTAATTTTAATTTTATAAG  797

seq1  ACCTAATATGTTTTTTAAATATTATTTTTAAAAGGATACCTCAGCTTTTC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATATGTTTTTTAAATATTATTTTTAAAAGGATACCTCAGCTTTTC  847

seq1  TACAAAATTTAAAGTGTGGTGGATTTGAGTTTTGTATTAATAAATTATGA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTTAAAGTGTGGTGGATTTGAGTTTTGTATTAATAAATTATGA  897

seq1  TCCTGGACACCATACTCTTCTAACCTCTCACTTTCATTATTAATGAACAG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACACCATACTCTTCTAACCTCTCACTTTCATTATTAATGAACAG  947

seq1  GGAATTTAAAGCCTTTGGGGTCCAGGTGGAAGGCACTGTTTGCATTTGCT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAAAGCCTTTGGGGTCCAGGTGGAAGGCACTGTTTGCATTTGCT  997

seq1  TTTTAATTATTTTGGCAACATCTTTTATACAACTAACCTCTCCCACTTCT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATTTTGGCAACATCTTTTATACAACTAACCTCTCCCACTTCT  1047

seq1  GAATTACCTATAGCTTGAGGATAATACCACCTATCTCTAGATTATGAAGG  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACCTATAGCTTGAGGATAATACCACCTATCTCTAGATTATGAAGG  1097

seq1  TTAGATGAATTCATGACTGGCACACACCCACAGCTCTAACTGACATTTAC  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGAATTCATGACTGGCACACACCCACAGCTCTAACTGACATTTAC  1147

seq1  AGTTTAAACTTAACTGATTTCTCACTTCATTTAGAATTC  1165
      |||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAACTTAACTGATTTCTCACTTCATTTAGAATTC  1186


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