BAC Information

Click to search

BAC

Clone NameB6Ng01-187B06
Chromosome18 (Build37)
Map Location 55,123,118 - 55,296,459
singlet/doubletdoublet
Overlap geneZfp608, LOC100043089
Upstream geneEG433184, LOC667360, EG545257, LOC100042489
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187B06.bB6Ng01-187B06.g
ACCGA011753GA011754
length1,075847
definitionB6Ng01-187B06.b B6Ng01-187B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,123,118 - 55,124,224)(55,295,614 - 55,296,459)
sequence
gaattcaggcaagcattgcgccactttctccttacagtgcacactctaat
tgcttccaggcagacacaatgtcccccacctttaatcctagcattcagga
agcagaggctggtcgatctctgtaaatatgaggccagcctggtctacata
gtgacaaccaggactacagaaagaaaacaagacttaaaaaaatttttttt
aaaggatctctttctagaccagggttctgacattcatacaaaacctgagt
ttctttgtcagcaaaccaggtatataataataacatctttgaaggttatc
ttaaaaccaataggactttgaaagtccttaaacataactgaagatgctac
tgaaatcaagaaacattcctcaggcaacaagattaaagattagtgtatca
aaatcaaaaaataattgatgacttttacttatgccaaaggtaaaaagaaa
agaaaaaagaaatcactgttcaactctttttttcaggcaggttgcctctg
cctctctgcctctctgcctctctgcctctctgcctctctgcctctctgcc
tctctgcctctctgcctctctgcctctctgcctctctgcctctctgcctc
tctgcctctgcctcctgaatgctgtgcaccacaaagatctgccaaaacca
ctgtcctcttccacaccagttatgggcaatgattgattacagatgagtac
aaacaatgatggcatacagaaaccctcagacaccgtcatgtttcaagttc
tttcatgaattttagcatagagagaaagggcaaattccatgcttgagttc
ctaagagctcatcacactccaaacacataggctgaccctttttatgcatg
tgcagatatgcacacgtttgggtgcacatatatgtgctctggtgtccaca
tgtgaactgacgttggatgtctcatgatattttcaccttatttttgagat
actttgtcactaacccagagcctcactctgctagatgggctgcagcatcc
cagagatcctgtctatacatccagcagatatggggaatgtttcaactgag
tttacgtgtgccatgatcgcaggcc

gaattcaatatgcctgctcaccaagtagggttgaattcactgaaagggaa
tgaccaggcttcctattctgggtttccatctggacaatccgaagcctctc
ttatccccagcaagaactccattaatgaatattcaacggaaagtattact
tcattgtcagcgctaattgctagttttaccttattagtagaagcttttct
gcggctgagcctgacatgcatttgtttgcacactgttattagccaagact
cggtgaagtcttgcaattaacacctctacattatctcatgccgggaaagc
aaagacagaaccagatgactcactttgtttcagctttgctcttgttgtct
gatatagaggcacttaaagagaagtgtacgctcctcagaatgccatatgg
agccaacagagaccataaaaggcttttcagggactggtgcatgaaagttc
attaagtccacagcaccatcctcaaatcctgatttaaaccctaccacggt
gcaggtacagcacctgtgtccctctcgctcggccaacagtccagttgctg
atggaggatccatcttcccaggaagcagaggaaataacattttcttctct
aaacattatgaagttaatgattcacaggacagttaaatagcttccagaac
tcctatcactttggagataaagcagacaaggcaataactgtattttattt
atttcttaacgctgctcccagcagcttatcactgatatttctgtaaagaa
tagggatggagggaggaggaatgtcaacagatcatatttcagttttatat
ttgggaaagagatcttttctctcagcacttggtcaaagtcgttcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55123118_55124224
seq2: B6Ng01-187B06.b_47_1121

seq1  GAATTCAGGCAAGCATTGCGCCACTTTCTCCTTACAGTGCACACTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAAGCATTGCGCCACTTTCTCCTTACAGTGCACACTCTAAT  50

seq1  TGCTTCCAGGCAGACACAATGTCCCCCACCTTTAATCCTAGCATTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAGGCAGACACAATGTCCCCCACCTTTAATCCTAGCATTCAGGA  100

seq1  AGCAGAGGCTGGTCGATCTCTGTAAATATGAGGCCAGCCTGGTCTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCTGGTCGATCTCTGTAAATATGAGGCCAGCCTGGTCTACATA  150

seq1  GTGACAACCAGGACTACAGAAAGAAAACAAGACTTAAAAAAATTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAACCAGGACTACAGAAAGAAAACAAGACTTAAAAAAATTTTTTTT  200

seq1  AAAGGATCTCTTTCTAGACCAGGGTTCTGACATTCATACAAAACCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTCTTTCTAGACCAGGGTTCTGACATTCATACAAAACCTGAGT  250

seq1  TTCTTTGTCAGCAAACCAGGTATATAATAATAACATCTTTGAAGGTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCAGCAAACCAGGTATATAATAATAACATCTTTGAAGGTTATC  300

seq1  TTAAAACCAATAGGACTTTGAAAGTCCTTAAACATAACTGAAGATGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAATAGGACTTTGAAAGTCCTTAAACATAACTGAAGATGCTAC  350

seq1  TGAAATCAAGAAACATTCCTCAGGCAACAAGATTAAAGATTAGTGTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAAGAAACATTCCTCAGGCAACAAGATTAAAGATTAGTGTATCA  400

seq1  AAATCAAAAAATAATTGATGACTTTTACTTATGCCAAAGGTAAAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAAATAATTGATGACTTTTACTTATGCCAAAGGTAAAAAGAAA  450

seq1  AGAAAAAAGAAATCACTGTTCAACTCTTTTTTTCAGGCAGGTTGCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGAAATCACTGTTCAACTCTTTTTTTCAGGCAGGTTGCCTCTG  500

seq1  CCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCC  550

seq1  TCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTC  600

seq1  TCTGCCTCTGCCTCCTGAATGCTGTGCACCACAAAGATCTGCCAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCCTGAATGCTGTGCACCACAAAGATCTGCCAAAACCA  650

seq1  CTGTCCTCTTCCACACCAGTTATGGGCAATGATTGATTACAGATGAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTTCCACACCAGTTATGGGCAATGATTGATTACAGATGAGTAC  700

seq1  AAACAATGATGGCATACAGAAACCCTCAGACACCGTCATGTTTCAAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGATGGCATACAGAAACCCTCAGACACCGTCATGTTTCAAGTTC  750

seq1  TTTCATGAATTTTAGCATAGAGAGAAAGGGCAAATTCCATGCTTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAATTTTAGCATAGAGAGAAAGGGCAAATTCCATGCTTGAGTTC  800

seq1  CTAAGAGCTCATCACACTCCAAACACATAGGCTGACCCTTTTTATGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCTCATCACACTCCAAACACATAGGCTGACCCTTTTTATGCATG  850

seq1  TGCAGATATGCACACGTTTGGGTGCACATATATGTGCTCTGGTGTCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATATGCACACGTTTGGGTGCACATATATGTGCTCTGGTGTCCACA  900

seq1  TGTGAAACTGACGTTGGATGTCTTCCTTGATTATTTTTCACCTTATTTTT  950
      |||| ||||||||||||||||||  | ||||   ||||||||||| ||||
seq2  TGTG-AACTGACGTTGGATGTCT--CATGAT--ATTTTCACCTTA-TTTT  944

seq1  TGAGATAACCTTTGTCACTAAACCCAGAGCCCTCCACTTCTGCTAGATGG  1000
      |||||||  |||||||||| |||||||||||   ||| ||||||||||||
seq2  TGAGATA--CTTTGTCACT-AACCCAGAGCC--TCAC-TCTGCTAGATGG  988

seq1  GCTGGCCAGCAATCCCCAGAGAATTCTGTCTATACCATCCCAGGCCAGAA  1050
      ||||  |||||   ||||||| || ||||||||| ||| ||||  |||| 
seq2  GCTG--CAGCA--TCCCAGAG-ATCCTGTCTATA-CAT-CCAG--CAGA-  1028

seq1  TTATGGGGGAATGTTTTTCCAACTGAGTTTTTAACGTGTGCCAATGATCT  1100
       ||| |||||||||||   |||||||||||   ||||||||| |||||| 
seq2  -TAT-GGGGAATGTTT---CAACTGAGTTT---ACGTGTGCC-ATGATC-  1068

seq1  GCAGGCC  1107
      |||||||
seq2  GCAGGCC  1075


seq1: chr18_55295614_55296459
seq2: B6Ng01-187B06.g_63_909 (reverse)

seq1  GGGGAACGACTTTGACCAAGTGCTGAGAG-AAAGATCTCTTTCCCAAATA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGGAACGACTTTGACCAAGTGCTGAGAGAAAAGATCTCTTTCCCAAATA  50

seq1  TAAAACTGAAATATGATCTGTTGACATTCCTCCTCCCTCCATCCCTATTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAATATGATCTGTTGACATTCCTCCTCCCTCCATCCCTATTC  100

seq1  TTTACAGAAATATCAGTGATAAGCTGCTGGGAGCAGCGTTAAGAAATAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAATATCAGTGATAAGCTGCTGGGAGCAGCGTTAAGAAATAAA  150

seq1  TAAAATACAGTTATTGCCTTGTCTGCTTTATCTCCAAAGTGATAGGAGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAGTTATTGCCTTGTCTGCTTTATCTCCAAAGTGATAGGAGTT  200

seq1  CTGGAAGCTATTTAACTGTCCTGTGAATCATTAACTTCATAATGTTTAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCTATTTAACTGTCCTGTGAATCATTAACTTCATAATGTTTAGA  250

seq1  GAAGAAAATGTTATTTCCTCTGCTTCCTGGGAAGATGGATCCTCCATCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATGTTATTTCCTCTGCTTCCTGGGAAGATGGATCCTCCATCAG  300

seq1  CAACTGGACTGTTGGCCGAGCGAGAGGGACACAGGTGCTGTACCTGCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGACTGTTGGCCGAGCGAGAGGGACACAGGTGCTGTACCTGCACC  350

seq1  GTGGTAGGGTTTAAATCAGGATTTGAGGATGGTGCTGTGGACTTAATGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGGTTTAAATCAGGATTTGAGGATGGTGCTGTGGACTTAATGAA  400

seq1  CTTTCATGCACCAGTCCCTGAAAAGCCTTTTATGGTCTCTGTTGGCTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGCACCAGTCCCTGAAAAGCCTTTTATGGTCTCTGTTGGCTCCA  450

seq1  TATGGCATTCTGAGGAGCGTACACTTCTCTTTAAGTGCCTCTATATCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCATTCTGAGGAGCGTACACTTCTCTTTAAGTGCCTCTATATCAGA  500

seq1  CAACAAGAGCAAAGCTGAAACAAAGTGAGTCATCTGGTTCTGTCTTTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAGCAAAGCTGAAACAAAGTGAGTCATCTGGTTCTGTCTTTGCT  550

seq1  TTCCCGGCATGAGATAATGTAGAGGTGTTAATTGCAAGACTTCACCGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGGCATGAGATAATGTAGAGGTGTTAATTGCAAGACTTCACCGAGT  600

seq1  CTTGGCTAATAACAGTGTGCAAACAAATGCATGTCAGGCTCAGCCGCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAATAACAGTGTGCAAACAAATGCATGTCAGGCTCAGCCGCAGA  650

seq1  AAAGCTTCTACTAATAAGGTAAAACTAGCAATTAGCGCTGACAATGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTACTAATAAGGTAAAACTAGCAATTAGCGCTGACAATGAAGT  700

seq1  AATACTTTCCGTTGAATATTCATTAATGGAGTTCTTGCTGGGGATAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTCCGTTGAATATTCATTAATGGAGTTCTTGCTGGGGATAAGAG  750

seq1  AGGCTTCGGATTGTCCAGATGGAAACCCAGAATAGGAAGCCTGGTCATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCGGATTGTCCAGATGGAAACCCAGAATAGGAAGCCTGGTCATTC  800

seq1  CCTTTCAGTGAATTCAACCCTACTTGGTGAGCAGGCATATTGAATTC  846
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGTGAATTCAACCCTACTTGGTGAGCAGGCATATTGAATTC  847


| Home | SequenceCutter | Blast | Download |