BAC Information

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BAC

Clone NameB6Ng01-188H01
Chromosome18 (Build37)
Map Location 31,319,813 - 31,438,526
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188H01.bB6Ng01-188H01.g
ACCGA012738GA012739
length1,1431,156
definitionB6Ng01-188H01.b B6Ng01-188H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,319,813 - 31,320,958)(31,437,380 - 31,438,526)
sequence
gaattcaagtcagaaatctttccccaatgatgcagatacaatgaaatgct
cacaatgacggagtgactctgaatagctaggcttccctctcactctcacg
gaatcagggcaaatgcttgtcttaaacatcctcagatgctgatggaacaa
ggaatattgagtgtaagctctgtagctatgtgccatcttagtaacatgat
atagaaatctcttcacagcggaagcttgtatttaacatatcatgcctgtt
ctcattagcccatgaattaaagactctgaaacattctgttgtctgcactt
tatctgttaatgtcaatatcttcctgctctaaatgaaacttgttgcttaa
ttattcaggaatattactagtttccatttgctactcatcagcatcaaagc
acttatgaaaaaagactctaaaaatgttatctgaacaaaattttctagca
tcttcaatggaatttgagtatatattacagtttgattccttttctttgac
atcttcccttgaactaattaatagtgtgggaattttatgaattctgaaac
aaataaataatctctgataaatatcactgtggtgatttggatgaagtgtc
cccataacacaaagatatttaaatacttggtccccatttggtagtcattt
gaagatgaggaggcatggccatgctggagaaaatacagcattggggggcc
agcgttgaggtttcaaaagatttgttccatttggggctcatgttctctaa
tccttatttttgtgtaaagatgagagctttgagctgctatttcagcacca
ttctttcctgcctgcgaccatgttcccttaccctcaggataaaggactct
cttccctctggaaccagaagctccaaataacttcttttcctgcaagttgc
tttggccatggtgttttatcacagcaatagaaaagtaactaattcaggca
cactcgaggttcttaatagacagagttaggattttttgcagaggtttagg
aaaaggcatggaccatctcctttctgtgcccacctggtagaagtatgaaa
tatctttgcctcatgttaataataaatgacagacgacgaccacactattc
ttgactagtattttaggtgctcctgtataacaagtaacataga
gaattcacttattgatataaagagtcaattgacatatttttctccactat
aacctccattcacagagcagcatggaaaagcaatcctccatgactcttct
agtatgttatagatggctgtaaatgctgattaagaaatgaatgaggcagg
acttctgttttaacaatgaaaggtattgggagaatagaaggattcttact
cagtgagtatatacaaagtaagatatattttaaagttaccaccaatggca
acaacagtaagattgataaatagttcaagacataccagtgctgtaagaac
aaaagcaaagcaaggaacaaactacatagcaagttagattagatacagga
gcatcttggctaagcaaatgaaatataaagggtatttgggggaaatctga
atatattctgaattttaagtaacataaaaattttattaaagtcgtaatag
aggaactattagctaaaaagtaattacagctcagtatgcatgtctttaaa
tatgttccatacatgtacctattaaataagttatgaaaaagtgttcaatt
atgacaatgacatgcataaatatatatgcacattaaaaagctaaaggagc
catgtgacattttcatccaaatatcgaatgaacttagtttttatctattt
tttttttttttagttcttgctacttccaaacaggacatgatcagataaga
aatatttacttcttagtaatcatttatttaaaaatgcccagaaaaacagg
cctatgggccacctgaagtttggcgagaggcccataattctcttcccatg
acacagagtttgcttcagcccacccgagatttattatctcctcaagtccc
ttccctctgtggcagagacagacagctttccccgtctctcctccatggct
gtcaaatactcatttatgtcctcctactcatttttcttttcccaccctct
tctatgaggccttcttggcaggcccacaaattattttcagatttttccaa
gggtacatcagtagttctccaaacacccattggggtggtttcttaccctt
ttatgggtagttaccttatgatgcctttctaggctaatagtggtatgggg
agtcctaaaagtgtcataaaacaaccaataagttaaggtgcattccttgg
cctacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31319813_31320958
seq2: B6Ng01-188H01.b_45_1187

seq1  GAATTCAAGTCAGAAATCTTTCCCCAATGATGCAGATACAATGAAATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCAGAAATCTTTCCCCAATGATGCAGATACAATGAAATGCT  50

seq1  CACAATGACGGAGTGACTCTGAATAGCTAGGCTTCCCTCTCACTCTCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACGGAGTGACTCTGAATAGCTAGGCTTCCCTCTCACTCTCACG  100

seq1  GAATCAGGGCAAATGCTTGTCTTAAACATCCTCAGATGCTGATGGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGGCAAATGCTTGTCTTAAACATCCTCAGATGCTGATGGAACAA  150

seq1  GGAATATTGAGTGTAAGCTCTGTAGCTATGTGCCATCTTAGTAACATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTGAGTGTAAGCTCTGTAGCTATGTGCCATCTTAGTAACATGAT  200

seq1  ATAGAAATCTCTTCACAGCGGAAGCTTGTATTTAACATATCATGCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCTCTTCACAGCGGAAGCTTGTATTTAACATATCATGCCTGTT  250

seq1  CTCATTAGCCCATGAATTAAAGACTCTGAAACATTCTGTTGTCTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGCCCATGAATTAAAGACTCTGAAACATTCTGTTGTCTGCACTT  300

seq1  TATCTGTTAATGTCAATATCTTCCTGCTCTAAATGAAACTTGTTGCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTAATGTCAATATCTTCCTGCTCTAAATGAAACTTGTTGCTTAA  350

seq1  TTATTCAGGAATATTACTAGTTTCCATTTGCTACTCATCAGCATCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGAATATTACTAGTTTCCATTTGCTACTCATCAGCATCAAAGC  400

seq1  ACTTATGAAAAAAGACTCTAAAAATGTTATCTGAACAAAATTTTCTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGAAAAAAGACTCTAAAAATGTTATCTGAACAAAATTTTCTAGCA  450

seq1  TCTTCAATGGAATTTGAGTATATATTACAGTTTGATTCCTTTTCTTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATGGAATTTGAGTATATATTACAGTTTGATTCCTTTTCTTTGAC  500

seq1  ATCTTCCCTTGAACTAATTAATAGTGTGGGAATTTTATGAATTCTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCTTGAACTAATTAATAGTGTGGGAATTTTATGAATTCTGAAAC  550

seq1  AAATAAATAATCTCTGATAAATATCACTGTGGTGATTTGGATGAAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAATCTCTGATAAATATCACTGTGGTGATTTGGATGAAGTGTC  600

seq1  CCCATAACACAAAGATATTTAAATACTTGGTCCCCATTTGGTAGTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAACACAAAGATATTTAAATACTTGGTCCCCATTTGGTAGTCATTT  650

seq1  GAAGATGAGGAGGCATGGCCATGCTGGAGAAAATACAGCATTGGGGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGGAGGCATGGCCATGCTGGAGAAAATACAGCATTGGGGGGCC  700

seq1  AGCGTTGAGGTTTCAAAAGATTTGTTCCATTTGGGGCTCATGTTCTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGAGGTTTCAAAAGATTTGTTCCATTTGGGGCTCATGTTCTCTAA  750

seq1  TCCTTATTTTTGTGTAAAGATGAGAGCTTTGAGCTGCTATTTCAGCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTTTTGTGTAAAGATGAGAGCTTTGAGCTGCTATTTCAGCACCA  800

seq1  TTCTTTCCTGCCTGCGACCATGTTCCCTTACCCTCAGGATAAAGGACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTGCCTGCGACCATGTTCCCTTACCCTCAGGATAAAGGACTCT  850

seq1  CTTCCCTCTGGAACCAGAAGCTCCAAATAACTTCTTTTCCTGCAAGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTGGAACCAGAAGCTCCAAATAACTTCTTTTCCTGCAAGTTGC  900

seq1  TTTGGCCATGGTGTTTTATCACAGCAATAGAAAAGTAACTAATTCAGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCATGGTGTTTTATCACAGCAATAGAAAAGTAACTAATTCAGGCA  950

seq1  CACTCGAGGTTCTTAATAGACAGAGTTAGGATTTTTTGCAGAGGTTTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGAGGTTCTTAATAGACAGAGTTAGGATTTTTTGCAGAGGTTTAGG  1000

seq1  AAAAGGCATGGACCATCTCCTTTCTGTGCCCACCTGGTAGAAGTATGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCATGGACCATCTCCTTTCTGTGCCCACCTGGTAGAAGTATGAAA  1050

seq1  TATCTTTGCCTCATGTTTAAATAATAAATGAACAGACAGACAAACACACT  1100
      |||||||||||||||||  ||||||||||| |||||| ||| | ||||||
seq2  TATCTTTGCCTCATGTT--AATAATAAATG-ACAGAC-GACGACCACACT  1096

seq1  AT--CTGACTAGTATTTTAGGTGCTCCCTGGTATAACAGGT-ACATAGA  1146
      ||   ||||||||||||||||||||||   |||||||| || |||||||
seq2  ATTCTTGACTAGTATTTTAGGTGCTCC--TGTATAACAAGTAACATAGA  1143

seq1: chr18_31437380_31438526
seq2: B6Ng01-188H01.g_64_1219 (reverse)

seq1  CGTAGGCCAAGAGAAAGCCACCTTAATTTATTTTGTTTTGTTTTATTGAC  50
      ||||||||||| ||| | |||||||| |||||     |||||||| ||||
seq2  CGTAGGCCAAG-GAATG-CACCTTAACTTATT---GGTTGTTTTA-TGAC  44

seq1  AACTTTTAGGACTCACCATACAACTATTAGACTAG-AAGCCATCATAAGT  99
       ||||||||||||| |||||| |||||||| |||| ||| ||||||||| 
seq2  -ACTTTTAGGACTCCCCATACCACTATTAGCCTAGAAAGGCATCATAAGG  93

seq1  TAACTAACCATAAAA-GGTAAGAAAC--ACCCAAT-GGTGTTT-GAGAAC  144
      |||||| |||||||| ||||||||||   |||||| ||||||| ||||||
seq2  TAACTACCCATAAAAGGGTAAGAAACCACCCCAATGGGTGTTTGGAGAAC  143

seq1  TACTGATGTACCCTT-GAAAAATCTG-AAATAATTTGTGGG-CTGCCAAG  191
      ||||||||||||||| |||||||||| |||||||||||||| ||||||||
seq2  TACTGATGTACCCTTGGAAAAATCTGAAAATAATTTGTGGGCCTGCCAAG  193

seq1  -AGGCCTCATAGAAGA-GGTGGGAAA--GAAAATGAGTAGGGAGACATAA  237
       ||||||||||||||| |||||||||   ||||||||||||  |||||||
seq2  AAGGCCTCATAGAAGAGGGTGGGAAAAGAAAAATGAGTAGGAGGACATAA  243

seq1  ATGAGTATTTGACAGCCATGGAGGAGAGACGGGGAAAGCTGTCTGTCTCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATTTGACAGCCATGGAGGAGAGACGGGGAAAGCTGTCTGTCTCT  293

seq1  GCCACAGAGGG-AGGGACTTGAGG-GATAATAAATCTCGGGT-GGCTGAA  334
      ||||||||||| |||||||||||| ||||||||||||||||| |||||||
seq2  GCCACAGAGGGAAGGGACTTGAGGAGATAATAAATCTCGGGTGGGCTGAA  343

seq1  GCAAACTCTGTGTCATGGGAAGAGAATTATGGGCCTCTCGCCAAACTTCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCTGTGTCATGGGAAGAGAATTATGGGCCTCTCGCCAAACTTCA  393

seq1  GGTGGCCCATAGGCCTGTTTTTCTGGGCATTTTTAAATAAATGATTACTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCATAGGCCTGTTTTTCTGGGCATTTTTAAATAAATGATTACTA  443

seq1  AGAAGTAAATATTTCTTATCTGATCATGTCCTGTTTGGAAGTAGCAAGAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAATATTTCTTATCTGATCATGTCCTGTTTGGAAGTAGCAAGAA  493

seq1  CTAAAAAAAAAAAAAATAGATAAAAACTAAGTTCATTCGATATTTGGATG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAAAAAAAATAGATAAAAACTAAGTTCATTCGATATTTGGATG  543

seq1  AAAATGTCACATGGCTCCTTTAGCTTTTTAATGTGCATATATATTTATGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCACATGGCTCCTTTAGCTTTTTAATGTGCATATATATTTATGC  593

seq1  ATGTCATTGTCATAATTGAACACTTTTTCATAACTTATTTAATAGGTACA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTGTCATAATTGAACACTTTTTCATAACTTATTTAATAGGTACA  643

seq1  TGTATGGAACATATTTAAAGACATGCATACTGAGCTGTAATTACTTTTTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAACATATTTAAAGACATGCATACTGAGCTGTAATTACTTTTTA  693

seq1  GCTAATAGTTCCTCTATTACGACTTTAATAAAATTTTTATGTTACTTAAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGTTCCTCTATTACGACTTTAATAAAATTTTTATGTTACTTAAA  743

seq1  ATTCAGAATATATTCAGATTTCCCCCAAATACCCTTTATATTTCATTTGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAATATATTCAGATTTCCCCCAAATACCCTTTATATTTCATTTGC  793

seq1  TTAGCCAAGATGCTCCTGTATCTAATCTAACTTGCTATGTAGTTTGTTCC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAAGATGCTCCTGTATCTAATCTAACTTGCTATGTAGTTTGTTCC  843

seq1  TTGCTTTGCTTTTGTTCTTACAGCACTGGTATGTCTTGAACTATTTATCA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCTTTTGTTCTTACAGCACTGGTATGTCTTGAACTATTTATCA  893

seq1  ATCTTACTGTTGTTGCCATTGGTGGTAACTTTAAAATATATCTTACTTTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTGTTGTTGCCATTGGTGGTAACTTTAAAATATATCTTACTTTG  943

seq1  TATATACTCACTGAGTAAGAATCCTTCTATTCTCCCAATACCTTTCATTG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCACTGAGTAAGAATCCTTCTATTCTCCCAATACCTTTCATTG  993

seq1  TTAAAACAGAAGTCCTGCCTCATTCATTTCTTAATCAGCATTTACAGCCA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGAAGTCCTGCCTCATTCATTTCTTAATCAGCATTTACAGCCA  1043

seq1  TCTATAACATACTAGAAGAGTCATGGAGGATTGCTTTTCCATGCTGCTCT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACATACTAGAAGAGTCATGGAGGATTGCTTTTCCATGCTGCTCT  1093

seq1  GTGAATGGAGGTTATAGTGGAGAAAAATATGTCAATTGACTCTTTATATC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGAGGTTATAGTGGAGAAAAATATGTCAATTGACTCTTTATATC  1143

seq1  AATAAGTGAATTC  1147
      |||||||||||||
seq2  AATAAGTGAATTC  1156