BAC Information

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BAC

Clone NameB6Ng01-193H15
Chromosome18 (Build37)
Map Location 6,007,388 - 6,203,894
singlet/doubletdoublet
Overlap geneArhgap12, Kif5b
Upstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
Downstream geneLOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H15.bB6Ng01-193H15.g
ACCGA016437GA016438
length1,0781,110
definitionB6Ng01-193H15.b B6Ng01-193H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,007,388 - 6,008,473)(6,202,784 - 6,203,894)
sequence
gaattctttgtttagctctgagcaccatttttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatattttggatattagtcc
cctatctgatttaggataggtaagatcctttcccaatctgttggtggcct
ttttgtcttttctatttaaatactatttgcatactattccctttccctcc
cttcccctcctcttccttcccctcccctcccttcacctcctatctcccac
tacctccctcatcctctctgtcctctctggatctctactcctctcatctt
cctcctctttctttgtttacttggttttgttttcagggaaaggttgaaag
tgtagcccacagtggctcatgggcaggctcctcctaactcaccctcttca
ttgctgatgcttacaggcttgtgcaggaggctgcagggggctgactttct
agatatcactattgtcactagttcatggcaaagctacggctagaaactac
atctctcaatggccatcaggacaccaaagataatgagcagagcagacaaa
tcaatctgacaggtaatttaccattccttattgaattcaccaagcgaacc
acagtgtattacgaacacgggaggttagagatgtcaaggagaagacagca
ttagtgtttaatagttattttcctttacctcacaaaacaattattctcaa
caaaatataccattatctaagagagaaagtttaagcagtgcaataataaa
aacagtattactaaagttctaatcaggcttgatatcttagagaagtcagt
gtatgtcctggttagccattttgtcaattaaacacaagcaagttttctct
gggaagaggaagccacattgataaaatgtctccataaaattagcttgtag
gaaagctttgggacattttcttaattagtgtgatatgggggggagggacc
aaacccattgtggggtggtaccatccttgagccagtgtcctggagtttat
agaactagctgagcagtcatgagagactaaggcaagcttcctgagtagtt
tgagcagcctggtttacatagtgagttc
gaattcctcttctgtactccatgggcaccaggcaatcatgtggtatgatg
tcataccacatgtggtatgatgaacataaaatctaattaaaacatttttt
aaagaaattaaatcattcctatcttgttctttatttcaaacatgagtttt
ataagaactaaaattttctctgcttttttcctatttcaggtgttgaaaag
taattgaagtttgaagaggacataaaatcagtctttcactaactaacctc
tattccttgggattgtagaaatttaattttttaatgtgtaaattactcct
accctgtacagctgtttcctacccactcttgtaaactctgctgcttccca
acactagagtgcaatgttgatgtcctagaagggaaacgacagtttacaac
tgcggccctgtttgttacacggtgtgtccttcgtgtcttcactgtgctga
gtaactgtgttgagggactctgctccttgatttgcctttctgtgagtgtg
taatcttggtttacattacatagctgctattgcttttcattttccctttt
ctactaaaatgtcttttttttttaaaggaaatatggaacatttagattaa
atgtcttaaattttactacttataacactacttgccacaaaatatatcag
gtcagtcagtactgtattttaaaaatccctcaagcaaggtatggtggcac
gcatctctactcccaggcagaggcagatggatggctgtcagcttgagttc
agcctgctttccaggacagccagggctatatagggagaccctgtctcaaa
aataaatcaaaaaataaaaattaacttaaaaataaatttaaaaatccctt
gatatgttgctggtatagtctctgaagcttgcctctgaaaacgttgaagc
ttgagaccaggagttcgagactgaacaggctcttttcttattatatcatt
agctcatgagatgccttttgaatacaaatatctacatattcaaaaatgga
tcctcatgttagattgattggaagttactatacccctttcttttctactc
ttgcacttaaacatagctatgtgctctgcttgtctgttatatctcttgct
aaggtaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_6007388_6008473
seq2: B6Ng01-193H15.b_42_1119

seq1  GAATTCTTTGTTTAGCTCTGAGCACCATTTTTTTAATGGGGTTATTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCACCATTTTTTTAATGGGGTTATTTGAT  50

seq1  TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATTTTGGATATTAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATTTTGGATATTAGTCC  100

seq1  CCTATCTGATTTAGGATAGGTAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGATTTAGGATAGGTAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTTTCTATTTAAATACTATTTGCATACTATTCCCTTTCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTTTCTATTTAAATACTATTTGCATACTATTCCCTTTCCCTCC  200

seq1  CTTCCCCTCCTCTTCCTTCCCCTCCCCTCCCTTCACCTCCTATCTCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCCTCTTCCTTCCCCTCCCCTCCCTTCACCTCCTATCTCCCAC  250

seq1  TACCTCCCTCATCCTCTCTGTCCTCTCTGGATCTCTACTCCTCTCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCTCATCCTCTCTGTCCTCTCTGGATCTCTACTCCTCTCATCTT  300

seq1  CCTCCTCTTTCTTTGTTTACTTGGTTTTGTTTTCAGGGAAAGGTTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTTCTTTGTTTACTTGGTTTTGTTTTCAGGGAAAGGTTGAAAG  350

seq1  TGTAGCCCACAGTGGCTCATGGGCAGGCTCCTCCTAACTCACCCTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCACAGTGGCTCATGGGCAGGCTCCTCCTAACTCACCCTCTTCA  400

seq1  TTGCTGATGCTTACAGGCTTGTGCAGGAGGCTGCAGGGGGCTGACTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATGCTTACAGGCTTGTGCAGGAGGCTGCAGGGGGCTGACTTTCT  450

seq1  AGATATCACTATTGTCACTAGTTCATGGCAAAGCTACGGCTAGAAACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCACTATTGTCACTAGTTCATGGCAAAGCTACGGCTAGAAACTAC  500

seq1  ATCTCTCAATGGCCATCAGGACACCAAAGATAATGAGCAGAGCAGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCAATGGCCATCAGGACACCAAAGATAATGAGCAGAGCAGACAAA  550

seq1  TCAATCTGACAGGTAATTTACCATTCCTTATTGAATTCACCAAGCGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGACAGGTAATTTACCATTCCTTATTGAATTCACCAAGCGAACC  600

seq1  ACAGTGTATTACGAACACGGGAGGTTAGAGATGTCAAGGAGAAGACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTATTACGAACACGGGAGGTTAGAGATGTCAAGGAGAAGACAGCA  650

seq1  TTAGTGTTTAATAGTTATTTTCCTTTACCTCACAAAACAATTATTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTTAATAGTTATTTTCCTTTACCTCACAAAACAATTATTCTCAA  700

seq1  CAAAATATACCATTATCTAAGAGAGAAAGTTTAAGCAGTGCAATAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATACCATTATCTAAGAGAGAAAGTTTAAGCAGTGCAATAATAAA  750

seq1  AACAGTATTACTAAAGTTCTAATCAGGCTTGATATCTTAGAGAAGTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTACTAAAGTTCTAATCAGGCTTGATATCTTAGAGAAGTCAGT  800

seq1  GTATGTCCTGGTTAGCCATTTTGTCAATTAAACACAAGCAAGTTTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCCTGGTTAGCCATTTTGTCAATTAAACACAAGCAAGTTTTCTCT  850

seq1  GGGAAGAGGAAGCCACATTGATAAAATGTCTCCATAAAATTAGCTTGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGAAGCCACATTGATAAAATGTCTCCATAAAATTAGCTTGTAG  900

seq1  GAAAGCTTTGGGACATTTTCTTAATTAGTGGTTGATAT-GGGGGGAGGGA  949
      ||||||||||||||||||||||||||||||  |||||| |||||||||||
seq2  GAAAGCTTTGGGACATTTTCTTAATTAGTG--TGATATGGGGGGGAGGGA  948

seq1  CCAAACCCATTGT-GGGTGGTACCATCC-TGAGCCAGTGGTCCTGGAGTT  997
      ||||||||||||| |||||||||||||| ||||||||| |||||||||||
seq2  CCAAACCCATTGTGGGGTGGTACCATCCTTGAGCCAGT-GTCCTGGAGTT  997

seq1  TATAAGAAACTAGGCTGAGCAAGTCATGAGGAGACTAAGGCAAGCCTCCT  1047
      ||||   ||||| ||||||| |||||||| ||||||||||||||| ||||
seq2  TATA--GAACTA-GCTGAGC-AGTCATGA-GAGACTAAGGCAAGCTTCCT  1042

seq1  GAGTAAGTTTGAGGCCAGCCTGGTTTACATAGTGAGTTC  1086
      |||| ||||||||  ||||||||||||||||||||||||
seq2  GAGT-AGTTTGAG--CAGCCTGGTTTACATAGTGAGTTC  1078

seq1: chr18_6202784_6203894
seq2: B6Ng01-193H15.g_65_1174 (reverse)

seq1  TTCTTACTTTAGCAGGAAGATATAACAGAACAAAGCAGAGCACATTAAGC  50
      ||||||| |||||| | ||||||||||||   |||||||||||||  |||
seq2  TTCTTACCTTAGCAAG-AGATATAACAGA--CAAGCAGAGCACAT--AGC  45

seq1  TATGTTTAAGTGCAGAAGTAGAAA--GAAGGGGTATAGT-ACTTCCAAAT  97
      ||||||||||||||  ||||||||   |||||||||||| |||||| |||
seq2  TATGTTTAAGTGCAAGAGTAGAAAAGAAAGGGGTATAGTAACTTCC-AAT  94

seq1  CCATTTAACATGA-GATCCATTTTTG-ATATGTAAGATATTTGTATTCAA  145
      | || |||||||| |||||||||||| |||||| ||||||||||||||||
seq2  CAATCTAACATGAGGATCCATTTTTGAATATGT-AGATATTTGTATTCAA  143

seq1  AAGGCATCTCATGAGCTAATGATATAATA--GAAAGAGCCTGTTCAGTCT  193
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AAGGCATCTCATGAGCTAATGATATAATAAGAAAAGAGCCTGTTCAGTCT  193

seq1  CGAACTCCTGGTCTCAAAGCTCAACGTTTTCAGAGGCAAGCTTCAGAGAC  243
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  CGAACTCCTGGTCTCAAGCTTCAACGTTTTCAGAGGCAAGCTTCAGAGAC  243

seq1  TATACCAGCAACATATCAAGGGATTTTTAAATTTATTTTTAAGTTAATTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATACCAGCAACATATCAAGGGATTTTTAAATTTATTTTTAAGTTAA-TT  292

seq1  TTTATTTTTTGATTTATTTTTGAGACAGGGTCTCCCTATATAGCCCTGGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGATTTATTTTTGAGACAGGGTCTCCCTATATAGCCCTGGC  342

seq1  TGTCCTGGAAAGCAGGCTGAACTCAAGCTGACAGCCATCCATCTGCCTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAAAGCAGGCTGAACTCAAGCTGACAGCCATCCATCTGCCTCT  392

seq1  GCCTGGGAGTAGAGATGCGTGCCACCATACCTTGCTTGAGGGATTTTTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGTAGAGATGCGTGCCACCATACCTTGCTTGAGGGATTTTTAA  442

seq1  AATACAGTACTGACTGACCTGATATATTTTGTGGCAAGTAGTGTTATAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTACTGACTGACCTGATATATTTTGTGGCAAGTAGTGTTATAAG  492

seq1  TAGTAAAATTTAAGACATTTAATCTAAATGTTCCATATTTCCTTTAAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATTTAAGACATTTAATCTAAATGTTCCATATTTCCTTTAAAAA  542

seq1  AAAAAGACATTTTAGTAGAAAAGGGAAAATGAAAAGCAATAGCAGCTATG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACATTTTAGTAGAAAAGGGAAAATGAAAAGCAATAGCAGCTATG  592

seq1  TAATGTAAACCAAGATTACACACTCACAGAAAGGCAAATCAAGGAGCAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAACCAAGATTACACACTCACAGAAAGGCAAATCAAGGAGCAGA  642

seq1  GTCCCTCAACACAGTTACTCAGCACAGTGAAGACACGAAGGACACACCGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAACACAGTTACTCAGCACAGTGAAGACACGAAGGACACACCGT  692

seq1  GTAACAAACAGGGCCGCAGTTGTAAACTGTCGTTTCCCTTCTAGGACATC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAACAGGGCCGCAGTTGTAAACTGTCGTTTCCCTTCTAGGACATC  742

seq1  AACATTGCACTCTAGTGTTGGGAAGCAGCAGAGTTTACAAGAGTGGGTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCACTCTAGTGTTGGGAAGCAGCAGAGTTTACAAGAGTGGGTAG  792

seq1  GAAACAGCTGTACAGGGTAGGAGTAATTTACACATTAAAAAATTAAATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTGTACAGGGTAGGAGTAATTTACACATTAAAAAATTAAATTT  842

seq1  CTACAATCCCAAGGAATAGAGGTTAGTTAGTGAAAGACTGATTTTATGTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATCCCAAGGAATAGAGGTTAGTTAGTGAAAGACTGATTTTATGTC  892

seq1  CTCTTCAAACTTCAATTACTTTTCAACACCTGAAATAGGAAAAAAGCAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAACTTCAATTACTTTTCAACACCTGAAATAGGAAAAAAGCAGA  942

seq1  GAAAATTTTAGTTCTTATAAAACTCATGTTTGAAATAAAGAACAAGATAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTAGTTCTTATAAAACTCATGTTTGAAATAAAGAACAAGATAG  992

seq1  GAATGATTTAATTTCTTTAAAAAATGTTTTAATTAGATTTTATGTTCATC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATTTAATTTCTTTAAAAAATGTTTTAATTAGATTTTATGTTCATC  1042

seq1  ATACCACATGTGGTATGACATCATACCACATGATTGCCTGGTGCCCATGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACATGTGGTATGACATCATACCACATGATTGCCTGGTGCCCATGG  1092

seq1  AGTACAGAAGAGGAATTC  1111
      ||||||||||||||||||
seq2  AGTACAGAAGAGGAATTC  1110