BAC Information

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BAC

Clone NameB6Ng01-198G17
Chromosome18 (Build37)
Map Location 89,496,471 - 89,670,261
singlet/doubletdoublet
Overlap geneDok6
Upstream geneLOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198G17.bB6Ng01-198G17.g
ACCGA020022GA020023
length1,1781,092
definitionB6Ng01-198G17.b B6Ng01-198G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,669,078 - 89,670,261)(89,496,471 - 89,497,557)
sequence
gaattcttattttaaagtatatcacattttgaaacatttaactttaatgt
gatcatcttaagctcagatataatgaaagcagtaaagcttgaatgtattc
atttactcaaaagtcctttattaggacattccatttaaagatatttttct
ttactaaaagggatgcagtctcactggcttagatctcagtatagaggaag
ctaaataaatagatgcccagatatagataaacatattggtctacctgttt
tgttttgcccatcacatccctgcacaaagaggaaaactttctcacatcat
tcacctttctcccttgtcttgctattcctatacactgttcaattttcctt
ttgaaaatcagaaaatttcttatcttgatccatcataaaatatttaaatt
tctagtgtagagttcagagttggtccaatcacaagcttataggttaaagg
tacttaatgaaaaaagcactcatttcatgtagagaaaaatagggaaaact
ttgtgaaatagttaatgcctcttcatccacaaaggaatttatttattggc
acattctgtgtagactaagaagtttgacatgtaaaacaaatgacaaatgg
tctatagcaattccatttgtaataaaagtcagcttcattaaaaaaatgaa
atatgtatacagagaggagaaagagactgagagacagagagacagagaaa
taaagtatagcctagttttaaagtacttttctaactcatacaaggtcatg
ggttcttatgaagtagagaagtcacagaaaaattctaattaaataaatta
acaaattaaactaatatccataaaatatttcaacacaaaaacttacataa
gcacaaatttaaaaacatagcttcattattcataatgctggctagaagat
ggggcattacttttgtaatgcaaccacaaaagatgcccgtgttctaggaa
ataaccctcccattcatgtatatataggaactactttaaactgagtagat
tacactcatttgaagacttgaatgtaggaagggcacttgatggaaagaga
gggagttttgcttgagtagtacaatttgcattcacatccacacttctata
cccattgaatggttaaccagagctccaatctagaagctcaattgagaaag
aagtactaatatgtcatataactgcaac

gaattctgggaccaccacagatgcaatacaaccctgcccagggcaaagga
cactcctgtctttatgagtatcaggattcaggtggttttgaggctcttgg
aattcttggatcctgaagtcaaggaaagtcttcaatttggacattcatag
tggcaggtgacctatgtattatttttttttctgagttcccaagagttttt
ctgaatttcactgaagttttatttttgcaagttgaaggggaaagttgtga
tttcttttgagatgccattgtaggcagtgaactgactaaagaatgcttat
tttgcatctagtatgtgggatcctggtatgaagtcaactgtcaggagact
gctctggattgatttgtgcccttctcaatattttcttgtgaagttataac
ctccaaatatgactattgaggtgtatggttggtttctttttttctatgac
ctgcttgtctcctatgcaaaggtgaaggaaagtgtcacaaagcacttgtg
gcagtctgagcaaaatttgctggagtcagtcctattcttctaccatgaag
ttttcagggatagaactctggtcatcagacactgggtcaagtgcctttac
ccactgacccatctcagcaatcataaatttgaaagagaccaatgaaggga
aaatgaggcttttggaggaaggaaagggaagggggaaataaatgatataa
ttgtattataatatcaaaactccaatgataataacacagatgagggctaa
ggccactttccacatagcatttacccttgtaaatgttctatgcatgttag
ttactgaagttcatttagcacaatataaaatacatccttttctcttcaca
aagtgtctctcaccgaaaatctgtttaaagttcctggggttaatttatta
gattgagtatagaaaaccttagaagttcatcatgtgtagttcctgttatt
tagaagacagataaacccatcacccagagatattaagaatgcgatcccta
ttgtgcagaggggaaatgcagtaccattctgcctatgccttccagggttc
agagatcagaatgtttgaaattgagcctgtaagcctcaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89669078_89670261
seq2: B6Ng01-198G17.b_43_1220 (reverse)

seq1  GTTGCAG-TATATGACATATTAGTACTTCTTTTTCCTCAAAATTGAGCTT  49
      ||||||| |||||||||||||||||||||||| ||     ||||||||||
seq2  GTTGCAGTTATATGACATATTAGTACTTCTTTCTC-----AATTGAGCTT  45

seq1  CTGGTTTGGGGCTCTGGTAACCCATTCAAATGGGTATAGAGTTGT-GATG  98
      || | |||| |||||||| | |||||| ||||||||||||  ||| ||||
seq2  CTAGATTGGAGCTCTGGTTAACCATTC-AATGGGTATAGAAGTGTGGATG  94

seq1  TGAAATGCAAATTGTACTACTCAAGCCAAAACTCCCTCCTCTTTCCATCA  148
      || |||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TG-AATGCAAATTGTACTACTCAAG-CAAAACTCCCT-CTCTTTCCATCA  141

seq1  AGTGCCCTTCCTACATTCAAGTCTTCAAATGAGTGTAATCTACTCAGTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCTTCCTACATTCAAGTCTTCAAATGAGTGTAATCTACTCAGTTT  191

seq1  AAAGTAGTTCCTATATATACATGAATGGGA-GGTTATTTCCTAGAACACG  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGTAGTTCCTATATATACATGAATGGGAGGGTTATTTCCTAGAACACG  241

seq1  GGCATCTTTTGTGGTTGCATTACAAAAGTAATGCCCCTTCTTCTAGCCAG  297
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCATCTTTTGTGGTTGCATTACAAAAGTAATGCCCCATCTTCTAGCCAG  291

seq1  CATTATGAATAATGAAGCTATGTTTTTAAATTTGTGCTTATGTAAGTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAATAATGAAGCTATGTTTTTAAATTTGTGCTTATGTAAGTTTT  341

seq1  TGTGTTGAAATATTTTATGGATATTAGTTTAATTTGTTAATTTATTTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAAATATTTTATGGATATTAGTTTAATTTGTTAATTTATTTAAT  391

seq1  TAGAATTTTTCTGTGACTTCTCTACTTCATAAGAACCCATGACCTTGTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTTCTGTGACTTCTCTACTTCATAAGAACCCATGACCTTGTAT  441

seq1  GAGTTAGAAAAGTACTTTAAAACTAGGCTATACTTTATTTCTCTGTCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGAAAAGTACTTTAAAACTAGGCTATACTTTATTTCTCTGTCTCT  491

seq1  CTGTCTCTCAGTCTCTTTCTCCTCTCTGTATACATATTTCATTTTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCAGTCTCTTTCTCCTCTCTGTATACATATTTCATTTTTTTAA  541

seq1  TGAAGCTGACTTTTATTACAAATGGAATTGCTATAGACCATTTGTCATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGACTTTTATTACAAATGGAATTGCTATAGACCATTTGTCATTT  591

seq1  GTTTTACATGTCAAACTTCTTAGTCTACACAGAATGTGCCAATAAATAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACATGTCAAACTTCTTAGTCTACACAGAATGTGCCAATAAATAAA  641

seq1  TTCCTTTGTGGATGAAGAGGCATTAACTATTTCACAAAGTTTTCCCTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTGGATGAAGAGGCATTAACTATTTCACAAAGTTTTCCCTATT  691

seq1  TTTCTCTACATGAAATGAGTGCTTTTTTCATTAAGTACCTTTAACCTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTACATGAAATGAGTGCTTTTTTCATTAAGTACCTTTAACCTATA  741

seq1  AGCTTGTGATTGGACCAACTCTGAACTCTACACTAGAAATTTAAATATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGATTGGACCAACTCTGAACTCTACACTAGAAATTTAAATATTT  791

seq1  TATGATGGATCAAGATAAGAAATTTTCTGATTTTCAAAAGGAAAATTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGATCAAGATAAGAAATTTTCTGATTTTCAAAAGGAAAATTGAA  841

seq1  CAGTGTATAGGAATAGCAAGACAAGGGAGAAAGGTGAATGATGTGAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATAGGAATAGCAAGACAAGGGAGAAAGGTGAATGATGTGAGAAA  891

seq1  GTTTTCCTCTTTGTGCAGGGATGTGATGGGCAAAACAAAACAGGTAGACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCTTTGTGCAGGGATGTGATGGGCAAAACAAAACAGGTAGACC  941

seq1  AATATGTTTATCTATATCTGGGCATCTATTTATTTAGCTTCCTCTATACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTATCTATATCTGGGCATCTATTTATTTAGCTTCCTCTATACT  991

seq1  GAGATCTAAGCCAGTGAGACTGCATCCCTTTTAGTAAAGAAAAATATCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTAAGCCAGTGAGACTGCATCCCTTTTAGTAAAGAAAAATATCTT  1041

seq1  TAAATGGAATGTCCTAATAAAGGACTTTTGAGTAAATGAATACATTCAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAATGTCCTAATAAAGGACTTTTGAGTAAATGAATACATTCAAG  1091

seq1  CTTTACTGCTTTCATTATATCTGAGCTTAAGATGATCACATTAAAGTTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGCTTTCATTATATCTGAGCTTAAGATGATCACATTAAAGTTAA  1141

seq1  ATGTTTCAAAATGTGATATACTTTAAAATAAGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAAAATGTGATATACTTTAAAATAAGAATTC  1178


seq1: chr18_89496471_89497557
seq2: B6Ng01-198G17.g_66_1157

seq1  GAATTCTGGGACCACCACAGATGCAATACAACCCTGCCCAGGGCAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACCACCACAGATGCAATACAACCCTGCCCAGGGCAAAGGA  50

seq1  CACTCCTGTCTTTATGAGTATCAGGATTCAGGTGGTTTTGAGGCTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGTCTTTATGAGTATCAGGATTCAGGTGGTTTTGAGGCTCTTGG  100

seq1  AATTCTTGGATCCTGAAGTCAAGGAAAGTCTTCAATTTGGACATTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGATCCTGAAGTCAAGGAAAGTCTTCAATTTGGACATTCATAG  150

seq1  TGGCAGGTGACCTATGTATTATTTTTTTTTCTGAGTTCCCAAGAGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGACCTATGTATTATTTTTTTTTCTGAGTTCCCAAGAGTTTTT  200

seq1  CTGAATTTCACTGAAGTTTTATTTTTGCAAGTTGAAGGGGAAAGTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCACTGAAGTTTTATTTTTGCAAGTTGAAGGGGAAAGTTGTGA  250

seq1  TTTCTTTTGAGATGCCATTGTAGGCAGTGAACTGACTAAAGAATGCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAGATGCCATTGTAGGCAGTGAACTGACTAAAGAATGCTTAT  300

seq1  TTTGCATCTAGTATGTGGGATCCTGGTATGAAGTCAACTGTCAGGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCTAGTATGTGGGATCCTGGTATGAAGTCAACTGTCAGGAGACT  350

seq1  GCTCTGGATTGATTTGTGCCCTTCTCAATATTTTCTTGTGAAGTTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGATTGATTTGTGCCCTTCTCAATATTTTCTTGTGAAGTTATAAC  400

seq1  CTCCAAATATGACTATTGAGGTGTATGGTTGGTTTCTTTTTTTCTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATATGACTATTGAGGTGTATGGTTGGTTTCTTTTTTTCTATGAC  450

seq1  CTGCTTGTCTCCTATGCAAAGGTGAAGGAAAGTGTCACAAAGCACTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTCTCCTATGCAAAGGTGAAGGAAAGTGTCACAAAGCACTTGTG  500

seq1  GCAGTCTGAGCAAAATTTGCTGGAGTCAGTCCTATTCTTCTACCATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGAGCAAAATTTGCTGGAGTCAGTCCTATTCTTCTACCATGAAG  550

seq1  TTTTCAGGGATAGAACTCTGGTCATCAGACACTGGGTCAAGTGCCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGATAGAACTCTGGTCATCAGACACTGGGTCAAGTGCCTTTAC  600

seq1  CCACTGACCCATCTCAGCAATCATAAATTTGAAAGAGACCAATGAAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGACCCATCTCAGCAATCATAAATTTGAAAGAGACCAATGAAGGGA  650

seq1  AAATGAGGCTTTTGGAGGAAGGAAAGGGAAGGGGGAAATAAATGATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGCTTTTGGAGGAAGGAAAGGGAAGGGGGAAATAAATGATATAA  700

seq1  TTGTATTATAATATCAAAACTCCAATGATAATAACACAGATGAGGGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTATAATATCAAAACTCCAATGATAATAACACAGATGAGGGCTAA  750

seq1  GGCCACTTTCCACATAGCATTTACCCTTGTAAATGTTCTATGCATGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTTTCCACATAGCATTTACCCTTGTAAATGTTCTATGCATGTTAG  800

seq1  TTACTGAAGTTCA-TTAGCACAATATAAAATACATCC-TTTCTCTTCACA  848
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TTACTGAAGTTCATTTAGCACAATATAAAATACATCCTTTTCTCTTCACA  850

seq1  AAGTGTCTCTCACCGAAAATCTGTTTAAAGTTCCTGGGGTTAATTTATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTCTCACCGAAAATCTGTTTAAAGTTCCTGGGGTTAATTTATTA  900

seq1  GATTGAGTATAGAAAA-CTTAGAAGTTCATCATGTGTAGTTCCTGTTATT  947
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATTGAGTATAGAAAACCTTAGAAGTTCATCATGTGTAGTTCCTGTTATT  950

seq1  TAGAAGACAGATAAACACATCACCCAGGAGATATTAAAGAATG-GAT-CC  995
      |||||||||||||||| ||||||||| |||||||| ||||||| ||| ||
seq2  TAGAAGACAGATAAACCCATCACCCA-GAGATATT-AAGAATGCGATCCC  998

seq1  TATTG-GCAGAGGGG-AATGCAGTACCA-TCTG-CTATG-CTTCCAGGGT  1040
      ||||| ||||||||| |||||||||||| |||| ||||| ||||||||||
seq2  TATTGTGCAGAGGGGAAATGCAGTACCATTCTGCCTATGCCTTCCAGGGT  1048

seq1  TCAGAGGATCAGGATGTTTGGAAATGAGCCTGGTAAAGCCTCAGGCA  1087
      ||||| |||||| ||||||| || ||||||||   ||||||||||||
seq2  TCAGA-GATCAGAATGTTTGAAATTGAGCCTG--TAAGCCTCAGGCA  1092


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