BAC Information

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BAC

Clone NameB6Ng01-198K02
Chromosome18 (Build37)
Map Location 82,656,169 - 82,824,355
singlet/doubletdoublet
Overlap geneMbp, EG637748, Zfp236
Upstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1
Downstream geneLOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198K02.bB6Ng01-198K02.g
ACCGA020177GA020178
length1,1971,114
definitionB6Ng01-198K02.b B6Ng01-198K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,656,169 - 82,657,357)(82,823,277 - 82,824,355)
sequence
gaattctggcctcttactccaaggccatttcctcctgctccatcacgtac
ccttttaagtaaattctgctgcctttaaaacacacacacacacacacata
cacacatagacgacttatattttacaactgagatcaaaagagcacgtaca
gattttgtaatctggagagaggcatgatcagagtttaccaggcaagagac
aggactgatgattcggcctacagagatgtttgcattttttacatgcatag
caatttcctttgcgaggcattcctagccatcttgatttcattagcgcaat
aagatcatagaacctcagtctcctgacactctggggtcttcaaaaggacc
ctcacctttttagacccaagagcattatctaaacctcatgtggcatgcag
aaaacgcttgaagcccagtctcacgggacaagcttctcagacccctgctg
tgcccggtgagagctggactctgctttttcataacactccactccacggc
cttgctaattattcagttaaaccatttttcaataactatttgaaaactat
tgcatctgagttcatggtgcattcttagaatgtttccatatggggctaaa
aagatgactcagcagctaaaagctctggctgctcttccagaggactgggg
ttcagttctgagccccacgtggtgcctcataactccagtcctggggaatt
taacatcttttctgtattcctctggcaccaggcactcacactggacacaa
acatacaactaagcaagcactcatgcacatggaatcgattttaaaagaac
aacaacaaaaaaaaccctatttccttatctgttgacgtcttgtgatatcc
ccccaccccgtgaaggaatgcagaagattgtcggtcgtgttacaattgag
gcgtgggaccgcaggcagaagcgacttctctaacttgctgtctccctttc
cttagtctcagactggcaatccatgcagaccccttctttctgtaacacca
agccccctgctgagtctgtgcacttgaacaaaaagcttctgaagcagcct
ttctgcacagagtcaccagcaggatccaagggaggcacagacacttcttg
cccagctctgccactcagtgttcagcaatcctcaccacacaattgtcaat
gcagcacatatgtaacgtaggaaagagcctttccagaaactttcaga

gaattccttcctccatcatgtgggttccagggattgagctctgttcagtc
gtggtgcctttacccacggctctgttttgtgtacatgtgtatatttctgt
ctatggcctgtgtacacattagtgcaggtgccagcagaagctagaggtct
ccagtctccttcgaactggagatacaggtggtcatgggccacctggtgtg
ggttttaggtcgtctgtaagagcaatatgtagtcttagttgctgaactat
gtctccagctcccatatagacatttttattgtgtaagagcagtggcagtt
ttggagttctttttttgtttgcaatatgttatacctgtatagccatggct
ggtctggaactcattatgtagcccacatagctttgattctcctgctctgc
atcccaaatgctagactcgcaggcacttggctaattcatgttgttgttgt
tgttactgtttttgagattcggtctctctacatatagattggtttttcgt
gaaggtctgagtcagcctcccacgtgctggcattgtaggtgtaccccatc
atccctgactaatgttgccatttttactggactggcaatctttctcatgg
ggaatttgttgcttctttctcaggttccagggcgtgagttgactgcctca
tggccgagtcagcttcaggaaacgcttctttcgtgtgctgatggcaccaa
gtctgctaggcagtcaggctataggttcctagtgctcttcctctgcctgc
tgttctcatcaaatcggagtgtggtagattataatagttggtttattaac
ctggaacaaatcatgcttttattgtgttataatccttccttcactctctt
cctctgcagggagagagggtaggggacggatagagcccagatatgctaag
cactgaactttcttagccctcacttccacttttcatcttttttataagtg
cattgcctcaacctgaattgaactttgttaaatttaatatttacctataa
atatataatggtatgcatttaataccattatgccatatggtttggtaaga
agaaaactccccagcaattccctgatctgaattgaaagcaatggtgggag
atctatgttccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_82656169_82657357
seq2: B6Ng01-198K02.b_43_1239

seq1  GAATTCTGGCCTCTTACTCCAAGGCCATTTCCTCCTGCTCCATCACGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCTCTTACTCCAAGGCCATTTCCTCCTGCTCCATCACGTAC  50

seq1  CCTTTTAAGTAAATTCTGCTGCCTTTAAAACACACACACACACACACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAGTAAATTCTGCTGCCTTTAAAACACACACACACACACACATA  100

seq1  CACACATAGACGACTTATATTTTACAACTGAGATCAAAAGAGCACGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGACGACTTATATTTTACAACTGAGATCAAAAGAGCACGTACA  150

seq1  GATTTTGTAATCTGGAGAGAGGCATGATCAGAGTTTACCAGGCAAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTAATCTGGAGAGAGGCATGATCAGAGTTTACCAGGCAAGAGAC  200

seq1  AGGACTGATGATTCGGCCTACAGAGATGTTTGCATTTTTTACATGCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGATGATTCGGCCTACAGAGATGTTTGCATTTTTTACATGCATAG  250

seq1  CAATTTCCTTTGCGAGGCATTCCTAGCCATCTTGATTTCATTAGCGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTTTGCGAGGCATTCCTAGCCATCTTGATTTCATTAGCGCAAT  300

seq1  AAGATCATAGAACCTCAGTCTCCTGACACTCTGGGGTCTTCAAAAGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATAGAACCTCAGTCTCCTGACACTCTGGGGTCTTCAAAAGGACC  350

seq1  CTCACCTTTTTAGACCCAAGAGCATTATCTAAACCTCATGTGGCATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTTTTAGACCCAAGAGCATTATCTAAACCTCATGTGGCATGCAG  400

seq1  AAAACGCTTGAAGCCCAGTCTCACGGGACAAGCTTCTCAGACCCCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGCTTGAAGCCCAGTCTCACGGGACAAGCTTCTCAGACCCCTGCTG  450

seq1  TGCCCGGTGAGAGCTGGACTCTGCTTTTTCATAACACTCCACTCCACGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGTGAGAGCTGGACTCTGCTTTTTCATAACACTCCACTCCACGGC  500

seq1  CTTGCTAATTATTCAGTTAAACCATTTTTCAATAACTATTTGAAAACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAATTATTCAGTTAAACCATTTTTCAATAACTATTTGAAAACTAT  550

seq1  TGCATCTGAGTTCATGGTGCATTCTTAGAATGTTTCCATATGGGGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGAGTTCATGGTGCATTCTTAGAATGTTTCCATATGGGGCTAAA  600

seq1  AAGATGACTCAGCAGCTAAAAGCTCTGGCTGCTCTTCCAGAGGACTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACTCAGCAGCTAAAAGCTCTGGCTGCTCTTCCAGAGGACTGGGG  650

seq1  TTCAGTTCTGAGCCCCACGTGGTGCCTCATAACTCCAGTCCTGGGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTGAGCCCCACGTGGTGCCTCATAACTCCAGTCCTGGGGAATT  700

seq1  TAACATCTTTTCTGTATTCCTCTGGCACCAGGCACTCACACTGGACACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTTTTCTGTATTCCTCTGGCACCAGGCACTCACACTGGACACAA  750

seq1  ACATACAACTAAGCAAGCACTCATGCACATGGAATCGATTTTAAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAACTAAGCAAGCACTCATGCACATGGAATCGATTTTAAAAGAAC  800

seq1  AACAACAAAAAAAACCCTATTTCCTTATCTGTTGACGTCTTGTGATATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAAAAACCCTATTTCCTTATCTGTTGACGTCTTGTGATATCC  850

seq1  CCCCACCCCGTGAAGGAATGCAGAAGATTGTCGGTCGTGTTACAA-TGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCCACCCCGTGAAGGAATGCAGAAGATTGTCGGTCGTGTTACAATTGAG  900

seq1  GCGT-GGACCGCAGGCAGAAGCGACTTCTCTAACTTGCTGTCT-CCTTTC  947
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCGTGGGACCGCAGGCAGAAGCGACTTCTCTAACTTGCTGTCTCCCTTTC  950

seq1  CTTAGTCTCAGACTGGC-ATCCATGCAGACCCC-TCTTTCTGTAACACCA  995
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CTTAGTCTCAGACTGGCAATCCATGCAGACCCCTTCTTTCTGTAACACCA  1000

seq1  AGCCCCCTGCTGAGTCTGTGCACTTGAAC-AAAAGC-TCTGAAGGCAGCC  1043
      ||||||||||||||||||||||||||||| |||||| |||||| ||||||
seq2  AGCCCCCTGCTGAGTCTGTGCACTTGAACAAAAAGCTTCTGAA-GCAGCC  1049

seq1  -TTCTGCACAGGAGTCACCAGCAGGGCCCAAGGAGGCCACAGGACACTTC  1092
       ||||||||| ||||||||||||||  ||||||  | |||| ||||||||
seq2  TTTCTGCACA-GAGTCACCAGCAGGATCCAAGGGAGGCACA-GACACTTC  1097

seq1  -TGCCCAGCTCTGCCACTCAGTG-TCAGCAAACCTCA-CACACA--TGTC  1137
       |||||||||||||||||||||| ||||||| ||||| ||||||  ||||
seq2  TTGCCCAGCTCTGCCACTCAGTGTTCAGCAATCCTCACCACACAATTGTC  1147

seq1  CATGCCCAAAGCACATAGGTTACGTAAGAAAGAGCCTTTCCAGAA--GTT  1185
       ||||    |||||||| || ||||| ||||||||||||||||||   ||
seq2  AATGC----AGCACATATGTAACGTAGGAAAGAGCCTTTCCAGAAACTTT  1193

seq1  CAGA  1189
      ||||
seq2  CAGA  1197


seq1: chr18_82823277_82824355
seq2: B6Ng01-198K02.g_64_1177 (reverse)

seq1  CAAGGA--CTAGATCTCC--CCA-TGCTT--CATTCAGATCAGG--AATG  41
      ||||||   |||||||||  ||| |||||   ||||||||||||  | ||
seq2  CAAGGAACATAGATCTCCCACCATTGCTTTCAATTCAGATCAGGGAATTG  50

seq1  CTGGG--ATTTTC-TCTTAC--AAACATAT-GCATA--TGTA-TAAATGC  82
      |||||   ||||| ||||||  || ||||| |||||   ||| |||||||
seq2  CTGGGGAGTTTTCTTCTTACCAAACCATATGGCATAATGGTATTAAATGC  100

seq1  ATAC--ATATATA-TTATA-GTAAATAT--AAATTAAC-AAGTTCAA-TC  124
      ||||   |||||| ||||| ||||||||  || ||||| |||||||| ||
seq2  ATACCATTATATATTTATAGGTAAATATTAAATTTAACAAAGTTCAATTC  150

seq1  AAGTTGA-GCAATGCAC-TATAAAAAAGATGAAAAGT-GAAGTGAGGGCT  171
      | ||||| ||||||||| ||||||||||||||||||| ||||||||||||
seq2  AGGTTGAGGCAATGCACTTATAAAAAAGATGAAAAGTGGAAGTGAGGGCT  200

seq1  AAG-AAGTTCAGTGCTTAGCATATCT-GGCTCTATCCGT-CCCTA-CCTC  217
      ||| |||||||||||||||||||||| |||||||||||| ||||| ||||
seq2  AAGAAAGTTCAGTGCTTAGCATATCTGGGCTCTATCCGTCCCCTACCCTC  250

seq1  TCTCCCTGCAGAGGAAGAGAGTG-AGGAAGGATTATAACACAAT-AAAGC  265
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TCTCCCTGCAGAGGAAGAGAGTGAAGGAAGGATTATAACACAATAAAAGC  300

seq1  ATGATTTGTTCCAGGTTAATAAACCAACTATTATAATCTACCACACTCCG  315
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGTTCCAGGTTAATAAACCAACTATTATAATCTACCACACTCCG  350

seq1  ATTTGATGAGAACAGCAGGCAGAGGAAGAGCACTAGGAACCTATAGCCTG  365
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGAGAACAGCAGGCAGAGGAAGAGCACTAGGAACCTATAGCCTG  400

seq1  ACTGCCTAGCAGACTTGGTGCCATCAGCACACGAAAGAAGCGTTTCCTGA  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAGCAGACTTGGTGCCATCAGCACACGAAAGAAGCGTTTCCTGA  450

seq1  AGCTGACTCGGCCATGAGGCAGTCAACTCACGCCCTGGAACCTGAGAAAG  465
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTCGGCCATGAGGCAGTCAACTCACGCCCTGGAACCTGAGAAAG  500

seq1  AAGCAACAAATTCCCCATGAGAAAGATTGCCAGTCCAGTAAAAATGGCAA  515
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAAATTCCCCATGAGAAAGATTGCCAGTCCAGTAAAAATGGCAA  550

seq1  CATTAGTCAGGGATGATGGGGTACACCTACAATGCCAGCACGTGGGAGGC  565
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTCAGGGATGATGGGGTACACCTACAATGCCAGCACGTGGGAGGC  600

seq1  TGACTCAGACCTTCACGAAAAACCAATCTATATGTAGAGAGACCGAATCT  615
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGACCTTCACGAAAAACCAATCTATATGTAGAGAGACCGAATCT  650

seq1  CAAAAACAGTAACAACAACAACAACATGAATTAGCCAAGTGCCTGCGAGT  665
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGTAACAACAACAACAACATGAATTAGCCAAGTGCCTGCGAGT  700

seq1  CTAGCATTTGGGATGCAGAGCAGGAGAATCAAAGCTATGTGGGCTACATA  715
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTTGGGATGCAGAGCAGGAGAATCAAAGCTATGTGGGCTACATA  750

seq1  ATGAGTTCCAGACCAGCCATGGCTATACAGGTATAACATATTGCAAACAA  765
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCCAGACCAGCCATGGCTATACAGGTATAACATATTGCAAACAA  800

seq1  AAAAAGAACTCCAAAACTGCCACTGCTCTTACACAATAAAAATGTCTATA  815
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACTCCAAAACTGCCACTGCTCTTACACAATAAAAATGTCTATA  850

seq1  TGGGAGCTGGAGACATAGTTCAGCAACTAAGACTACATATTGCTCTTACA  865
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGGAGACATAGTTCAGCAACTAAGACTACATATTGCTCTTACA  900

seq1  GACGACCTAAAACCCACACCAGGTGGCCCATGACCACCTGTATCTCCAGT  915
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACCTAAAACCCACACCAGGTGGCCCATGACCACCTGTATCTCCAGT  950

seq1  TCGAAGGAGACTGGAGACCTCTAGCTTCTGCTGGCACCTGCACTAATGTG  965
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGGAGACTGGAGACCTCTAGCTTCTGCTGGCACCTGCACTAATGTG  1000

seq1  TACACAGGCCATAGACAGAAATATACACATGTACACAAAACAGAGCCGTG  1015
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGCCATAGACAGAAATATACACATGTACACAAAACAGAGCCGTG  1050

seq1  GGTAAAGGCACCACGACTGAACAGAGCTCAATCCCTGGAACCCACATGAT  1065
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGCACCACGACTGAACAGAGCTCAATCCCTGGAACCCACATGAT  1100

seq1  GGAGGAAGGAATTC  1079
      ||||||||||||||
seq2  GGAGGAAGGAATTC  1114


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